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The possibility of lipid-ubiquitin conjugation associated with xenophagy

Research Project

Project/Area Number 16K14724
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Cell biology
Research InstitutionGifu University (2017-2018)
Osaka University (2016)

Principal Investigator

Kubori Tomoko  岐阜大学, 大学院医学系研究科, 准教授 (20397657)

Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Fiscal Year 2017: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2016: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywordsユビキチン / エフェクター / 脂質結合 / 液胞 / 病原細菌 / ゼノファジー
Outline of Final Research Achievements

Legionella is a Gram-negative bacterial pathogen that can deliver a large array of effector proteins into host eukaryotic cells to manipulate various cellular systems including the ubiquitin modification. Ubiquitin is known to conjugate exclusively with proteins. However, our analyses of ubiquitin accumulated on the bacterial vacuole raised the possibility of lipid-ubiquitin conjugation. By transfection of HeLa cells with latex beads, which mimics bacterial infection, we found that ubiquitin accumulated on the beads were subjected to modification. In order to examine the covalent binding of ubiquitin with lipid, we established the chemical synthesis of liposomes with combination of lipids. The result of in vitro analysis using Legionella effector proteins and the liposomes suggested that a bacterial ubiquitin ligase mediates the ubiquitin-lipid conjugation. Taken together, we raised the possibility of the non-canonical form of ubiquitin conjugation.

Academic Significance and Societal Importance of the Research Achievements

ユビキチン修飾系は様々な局面で細胞内システムを文字どおり支配する重要な反応系である。従来、ユビキチン修飾の標的はタンパク質のみであると信じられてきた。一方、オートファジーに必須なユビキチン様タンパク質である LC3は脂質に結合することが広く知られている。我々は病原細菌を用いた感染実験を通じてユビキチンが脂質に共有結合する可能性を見出した。本研究課題ではリポソーム反応系などを用いてその可能性を確認するとともに、その活性を担う可能性を持つ新たな酵素を見出した。仮説の証明はユビキチン反応系の常識を塗り替える新たな概念の創出につながり、ユビキチンが介在する様々な疾患の予防や治療への基盤提供をもたらす。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (25 results)

All 2019 2018 2017 2016 Other

All Journal Article (8 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 8 results,  Open Access: 4 results,  Acknowledgement Compliant: 2 results) Presentation (13 results) (of which Int'l Joint Research: 7 results,  Invited: 6 results) Book (1 results) Remarks (3 results)

  • [Journal Article] Emerging insights into bacterial deubiquitinases2019

    • Author(s)
      Tomoko kubori, Tomoe Kitao, Hiroki Ando
    • Journal Title

      Current Opinion in Microbiology

      Volume: 47 Pages: 14-19

    • DOI

      10.1016/j.mib.2018.10.001

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Isolation of the Dot/Icm Type IV Secretion System Core Complex from Legionella pneumophila.2019

    • Author(s)
      Kubori T, Nagai H.
    • Journal Title

      Methods Mol Biol.

      Volume: 1921 Pages: 241-247

    • DOI

      10.1007/978-1-4939-9048-1_15

    • ISBN
      9781493990474, 9781493990481
    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] LotA, a Legionella deubiquitinase, has dual catalytic activity and contributes to intracellular growth.2018

    • Author(s)
      Kubori T, Kitao T, Ando H and Nagai H.
    • Journal Title

      Cell Microbiol.

      Volume: Mar 15 Issue: 7 Pages: e12840-e12840

    • DOI

      10.1111/cmi.12840

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Subversion of Host Membrane Dynamics by the Legionella Dot/Icm TypeIV Secretion System.2017

    • Author(s)
      Hilbi H, Nagai H, Kubori T, Roy CR.
    • Journal Title

      Curr Top Microbiol Immunol.

      Volume: 413 Pages: 221-242

    • DOI

      10.1007/978-3-319-75241-9_9

    • ISBN
      9783319752402, 9783319752419
    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Legionella RavZ Plays a Role in Preventing Ubiquitin Recruitment to Bacteria-Containing Vacuoles.2017

    • Author(s)
      Kubori T, Bui XT, Hubber A and Nagai H.
    • Journal Title

      Front Cell Infect Microbiol.

      Volume: 7 Pages: 384-384

    • DOI

      10.3389/fcimb.2017.00384

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Bacterial secretion system skews the fate of Legionella-containing vacuoles towards LC3-associated phagocytosis.2017

    • Author(s)
      Hubber A., Kubori T., Coban C., Matsuzawa T., Ogawa M., Kawabata T., Yoshimori T., and Nagai H.
    • Journal Title

      Sci Rep.

      Volume: 7 Issue: 1 Pages: 44795-44795

    • DOI

      10.1038/srep44795

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Isolation of the Dot/Icm Type IV Secretion System Core Complex from Legionella pneumophila for Negative Stain Electron Microscopy Studies2017

    • Author(s)
      Kubori T and Nagai H.
    • Journal Title

      bio-pritocol

      Volume: 7

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Life with bacterial secretion systems.2016

    • Author(s)
      Kubori T.
    • Journal Title

      PLoS Pathog.

      Volume: 12(8) Issue: 8 Pages: e1005562-e1005562

    • DOI

      10.1371/journal.ppat.1005562

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] Manipulation of the host ubiquitin system by Legionella2019

    • Author(s)
      Tomoko Kubori
    • Organizer
      Cold Spring Harbor Asia Conference on Bacterial Infection and Host Defense
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Manipulation of the host ubiquitin system by Legionella2018

    • Author(s)
      Tomoko Kubori
    • Organizer
      ICISE, Qui Nhon, Vietnam
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] PLOS Pathogens Writing Workshop2018

    • Author(s)
      Tomoko Kubori
    • Organizer
      ICISE, Qui Nhon, Vietnam
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Legionella manipulates host cellular systems utilizing the type IV secretion system2018

    • Author(s)
      久堀智子
    • Organizer
      第 91 回日本細菌学会総会
    • Related Report
      2017 Research-status Report
  • [Presentation] 宿主オートファジー関連システムとレジオネラ2017

    • Author(s)
      久堀智子、Andree Hubber、Xuan Thanh Bui、永井宏樹
    • Organizer
      第 90 回日本細菌学会総会
    • Place of Presentation
      仙台国際センター展示棟(宮城県、仙台市)
    • Year and Date
      2017-03-19
    • Related Report
      2016 Research-status Report
  • [Presentation] Manipulation of the host ubiquitin system by Legionella Deubiquitinases.2017

    • Author(s)
      Tomoko Kubori
    • Organizer
      OIST workshop: Bacterial Flagella, Injectisome and Type III Secretion Systems
    • Place of Presentation
      沖縄科学技術大学院大学 Main Campus (沖縄県、国頭郡恩納村)
    • Year and Date
      2017-03-01
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] 病原細菌レジオネラによる宿主ユビキチンシステムの操作2017

    • Author(s)
      久堀智子
    • Organizer
      新学術領域「運動超分子マシナリーが織りなす調和と多様性」 生体運動研究合同班会議
    • Place of Presentation
      神戸国際会議場 国際会議室(兵庫県、神戸市)
    • Year and Date
      2017-01-06
    • Related Report
      2016 Research-status Report
  • [Presentation] Manipulation of the host ubiquitin system by Legionella.2017

    • Author(s)
      Tomoko Kubori
    • Organizer
      International Union of Microbiological Societies (IUMS2017)
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 宿主オートファジー関連システムとレジオネラ2017

    • Author(s)
      久堀智子
    • Organizer
      日本顕微鏡学会 第 60 回記念シンポジウム
    • Related Report
      2017 Research-status Report
    • Invited
  • [Presentation] Manipulation of the host ubiquitin system by Legionella Deubiquitinases.2016

    • Author(s)
      Tomoko Kubori and Hiroki Nagai
    • Organizer
      T4SS2016: Type IV secretion in Gram-Nagative and Gram-Positive Bacteria
    • Place of Presentation
      Beilngries, GERMANY
    • Year and Date
      2016-12-08
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] 病原因子分泌系を介した細菌と宿主細胞の相互作用2016

    • Author(s)
      久堀智子
    • Organizer
      東京工業大学 Cell Biology Unit 第4回コロキウム
    • Place of Presentation
      東京工業大学すずかけ台キャンパス(神奈川県横浜市)
    • Year and Date
      2016-10-21
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] Manipulation of the host ubiquitin system by Legionella Deubiquitinases.2016

    • Author(s)
      Tomoko Kubori and Hiroki Nagai
    • Organizer
      第 15 回 あわじしま感染症・免疫フォーラム
    • Place of Presentation
      淡路夢舞台国際会議場(兵庫県、淡路市)
    • Year and Date
      2016-09-06
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Manipulation of the host ubiquitin system by Legionella Deubiquitinases.2016

    • Author(s)
      久堀智子
    • Organizer
      新学術領域「運動超分子マシナリーが織りなす調和と多様性」 第 4 回領域全体会議
    • Place of Presentation
      長崎大学良順会館(長崎県、長崎市)
    • Year and Date
      2016-06-08
    • Related Report
      2016 Research-status Report
  • [Book] Legionella Methods and Protocols Second Edition2019

    • Author(s)
      Tomoko Kubori, Hiroki Nagai
    • Total Pages
      476
    • Publisher
      Springer Nature
    • ISBN
      9781493990474
    • Related Report
      2018 Annual Research Report
  • [Remarks] Nagai lab

    • URL

      https://sites.google.com/view/nagai-lab

    • Related Report
      2018 Annual Research Report
  • [Remarks] Nagai Lab

    • URL

      https://sites.google.com/site/nagailabjp/

    • Related Report
      2017 Research-status Report
  • [Remarks] Nagai Lab

    • URL

      http://nagailab.biken.osaka-u.ac.jp/

    • Related Report
      2017 Research-status Report 2016 Research-status Report

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Published: 2016-04-21   Modified: 2020-03-30  

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