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Analysis of maintenance mechanism of genome structure by bacterial methylome and IS transposition assay.

Research Project

Project/Area Number 16K14892
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Applied microbiology
Research InstitutionTokyo University of Agriculture

Principal Investigator

YOSHIKAWA Hirofumi  東京農業大学, 生命科学部, 教授 (50175676)

Project Period (FY) 2016-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Fiscal Year 2017: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2016: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywordsメチローム / シトシンメチル化 / 挿入配列 / トランスポゼース / アデニンメチル化 / 親鎖識別機構 / 胞子形成 / 誤対合修復 / 実験進化 / 分子シャペロン / 遺伝子発現 / 進化
Outline of Final Research Achievements

In terms of maintenance mechanisms of genome structure, we focused on two phenomena, methylation and IS transposition. Bacterial epigenetics has been noted only recently and correlation with growth regulation is totally unknown. In this study, we demonstrated sporulation specific methylation in Bacillus subtilis. While transposition of IS derived from natto strain has been found to be strictly dependent on recA gene, its essential function on IS transposition was not homologous recombination but ATP hydrolysis activity. In addition, we explored the possible evolutionary background of the unique feature of 168 genome which harbored no IS element. Successive culture of 168 cells with our newly developed IS transposition assay system revealed that 168 cells allowed IS transposition to some extent, but later inhibitory effect of IS transposition seemed to emerge by inactivating transposase activity. Those transposition-capable cells grew slowly and would be titrate out during evolution.

Report

(3 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • Research Products

    (5 results)

All 2018 2017

All Journal Article (1 results) (of which Peer Reviewed: 1 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (4 results)

  • [Journal Article] Transposition of insertion sequence IS<i>256Bsu1</i> in <i>Bacillus subtilis</i> 168 is strictly dependent on <i>recA</i>2017

    • Author(s)
      Akashi M, Harada S, Moki S, Okouji Y, Takahashi K, Kada S, Yamagami K, Sekine Y, Watanabe S, Chibazakura T, Yoshikawa H.
    • Journal Title

      Genes & Genetic Systems

      Volume: 92 Issue: 2 Pages: 59-71

    • DOI

      10.1266/ggs.16-00071

    • NAID

      130006172746

    • ISSN
      1341-7568, 1880-5779
    • Related Report
      2017 Annual Research Report 2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] 人為的IS誘導が枯草菌168株に与える影響の解析2018

    • Author(s)
      徳山麻里、原田翔太,兼崎友、朝井計、吉川博文
    • Organizer
      日本ゲノム微生物学会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 枯草菌168 株が挿入配列を持たない理由の解明2018

    • Author(s)
      徳山麻里,吉川博文,朝井計,原田翔太,兼崎友
    • Organizer
      日本農芸化学会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 枯草菌分子シャペロンによる変異緩衝作用の検証2017

    • Author(s)
      北村 夏美、法花津 匠、大塚 まみ、武井 若紗、小菅 是子、吉川 博文
    • Organizer
      日本農芸化学会
    • Place of Presentation
      京都女子大学(京都市)
    • Year and Date
      2017-03-19
    • Related Report
      2016 Research-status Report
  • [Presentation] 枯草菌分子シャペロンGroES/Lによる変異の蓄電池機能2017

    • Author(s)
      北村夏美、法花津匠、大塚まみ、武井若紗、小菅是子、吉川博文
    • Organizer
      日本ゲノム微生物学会
    • Place of Presentation
      慶應義塾大学湘南藤沢キャンパス(藤沢市)
    • Year and Date
      2017-03-02
    • Related Report
      2016 Research-status Report

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Published: 2016-04-21   Modified: 2019-03-29  

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