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Investigation of practical calculation protocols in the reproduction of spectra of natural products.

Research Project

Project/Area Number 16K14910
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Bioorganic chemistry
Research InstitutionHirosaki University

Principal Investigator

HASHIMOTO Masaru  弘前大学, 農学生命科学部, 教授 (40212138)

Co-Investigator(Kenkyū-buntansha) 根平 達夫  広島大学, 総合科学研究科, 准教授 (60321692)
Project Period (FY) 2016-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Fiscal Year 2017: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2016: ¥2,990,000 (Direct Cost: ¥2,300,000、Indirect Cost: ¥690,000)
Keywords天然物スペクトル / NMRスペクトル / ECDスペクトル / 密度汎関数計算 / スペクトル予想 / 密度汎関数 / 基底関数 / 円二色性スペクトル / 理論的帰属 / 真空紫外領域 / 理論ECDスペクトル / シクロヘルミントールX / 6置換スピロシクロプロパン / ECD / 時間依存密度汎関数計算 / 天然物 / 絶対配置予測
Outline of Final Research Achievements

For effective NMR and ECD reproduction of the natural products based on the density funvtional theory, appropriate functions, basis sets, and the selection method of the practical conformers were investigated. These revealed that a combination of BHLYP (density function) and def2-TZVP (basis set) afford satisfactory spectra of newly isolated neomacrophorin X, cyclohelminthol X, cyclohelminthol Y to elucidate the total structures. In the case of lager sized molecules def2-SVP is also applicable. In addition, Solvent effect was effective to reproduce the NMR and ECD spectral difference of neomacrophorin X between CDCl3 and CD3OD.

Report

(3 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • Research Products

    (30 results)

All 2018 2017 2016

All Journal Article (12 results) (of which Int'l Joint Research: 5 results,  Peer Reviewed: 12 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (18 results) (of which Invited: 4 results)

  • [Journal Article] 12-Deoxyroridin J and 12-Deoxyepiisororidin E from Calcarisporium arbuscular2018

    • Author(s)
      Manami Matsumoto, Shizuya Tanaka, Akio Tonouchi, and Masaru Hashimoto
    • Journal Title

      Tetrahedron Letters

      Volume: 59 Issue: 21 Pages: 1992-1995

    • DOI

      10.1016/j.tetlet.2018.03.089

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Two new secondary metabolites from a fungus of the genus Robillarda2018

    • Author(s)
      Shimoyama Takeo、Miyoshi Mizuki、Nehira Tatsuo、Motojima Atsuko、Oikawa Tsutomu、Laurence Olivier、Igarashi Yasuhiro
    • Journal Title

      The Journal of Antibiotics

      Volume: 71 Issue: 4 Pages: 432-437

    • DOI

      10.1038/s41429-017-0015-x

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Stereochemical Correction and Total Structure of Roridin J2017

    • Author(s)
      Manami Matsumoto, Atsushi Ito, Akio Tonouchi, Masaaki Okazaki, Masaru Hashimoto
    • Journal Title

      Tetrahedron

      Volume: 73 Issue: 36 Pages: 5430-5435

    • DOI

      10.1016/j.tet.2017.07.048

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cyclohelminthol X, a Hexa-Substituted Spirocyclopropane from Helminthosporium velutinum yone96: Structural Elucidation, Electronic Circular Dichroism Analysis, and Biological Properties2017

    • Author(s)
      Tanaka Shizuya、Honmura Yuna、Uesugi Shota、Fukushi Eri、Tanaka Kazuaki、Maeda Hayato、Kimura Ken-ichi、Nehira Tatsuo、Hashimoto Masaru
    • Journal Title

      The Journal of Organic Chemistry

      Volume: 82 Issue: 11 Pages: 5574-5582

    • DOI

      10.1021/acs.joc.7b00393

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Neomacrophorin X, a [4.4.3]Propellane-Type Meroterpenoid from Trichoderma sp. 1212-032017

    • Author(s)
      Kusakabe Kazuaki、Honmura Yuna、Uesugi Shota、Tonouchi Akio、Maeda Hayato、Kimura Ken-ichi、Koshino Hiroyuki、Hashimoto Masaru
    • Journal Title

      Journal of Natural Products

      Volume: 80 Issue: 5 Pages: 1484-1492

    • DOI

      10.1021/acs.jnatprod.6b01177

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Computationally Aided Absolute Stereochemical Determination of Enantioenriched Amines2017

    • Author(s)
      Zhang Jun、Gholami Hadi、Ding Xinliang、Chun Minji、Vasileiou Chrysoula、Nehira Tatsuo、Borhan Babak
    • Journal Title

      Organic Letters

      Volume: 19 Issue: 6 Pages: 1362-1365

    • DOI

      10.1021/acs.orglett.7b00246

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Ficusnotins A-F: Rare diarylbutanoids from the leaves of Ficus nota2017

    • Author(s)
      Latayada Felmer S.、Uy Mylene M.、Akihara Yui、Ohta Emi、Nehira Tatsuo、Omura Hisashi、Ohta Shinji
    • Journal Title

      Phytochemistry

      Volume: 141 Pages: 98-104

    • DOI

      10.1016/j.phytochem.2017.05.016

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] New Prenylated ortho-Dihydroxycoumarins from the Fruits of Ficus nipponica2017

    • Author(s)
      Akihara Yui、Ohta Emi、Nehira Tatsuo、Omura Hisashi、Ohta Shinji
    • Journal Title

      Chemistry & Biodiversity

      Volume: 14 Issue: 9

    • DOI

      10.1002/cbdv.201700196

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Spontaneous emulsification and self-propulsion of oil droplets induced by the synthesis of amino acid-based surfactants2017

    • Author(s)
      Nagasaka Yuriko、Tanaka Shinpei、Nehira Tatsuo、Amimoto Tomoko
    • Journal Title

      Soft Matter

      Volume: 13 Issue: 37 Pages: 6450-6457

    • DOI

      10.1039/c7sm01117b

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Petroquinones: Trimeric and dimeric xestoquinone derivatives isolated from the marine sponge Petrosia alfiani2016

    • Author(s)
      N. Tanokashira, S. Kukita, H. Kato, T. Nehira, E. D. Angkouw, R. E. P. Mangindaan, N. J. de Voogd, S. Tsukamoto
    • Journal Title

      Tetrahedron

      Volume: 72 Issue: 35 Pages: 5530-5540

    • DOI

      10.1016/j.tet.2016.07.045

    • NAID

      120006897989

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Crataegusins A and B, new flavanocoumarins from the dried fruits of Crataegus pinnatifida var. major (Rosacea)2016

    • Author(s)
      Kohei Kazuma, Yuka Isobe, Haruka Asahina, Tatsuo Nehira, Motoyoshi Satake, Katsuhiro Konno
    • Journal Title

      Natural Product Communications

      Volume: 11 Pages: 965-969

    • Related Report
      2016 Research-status Report
    • Peer Reviewed
  • [Journal Article] Nabscessins A and B, new aminocyclitol derivatives from Nocardia abscessus IFM 10029T2016

    • Author(s)
      Shoko Hara, Naoki Ishikawa, Yasumasa Hara, Tatsuo Nehira, Kanae Sakai, Tohru Gonoi, Masami Ishibashi
    • Journal Title

      Journal of Natural Products

      Volume: 80 Issue: 2 Pages: 565-568

    • DOI

      10.1021/acs.jnatprod.6b00935

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] Cyclohelminthol Xの単離・構造2018

    • Author(s)
      橋本 勝, 田中 静也, 福士 江里
    • Organizer
      日本農芸化学会2018年度大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Cyclohelminthol Y の構造2018

    • Author(s)
      田中静也、橋本勝
    • Organizer
      日本農芸化学会2018年度大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Calcarisporium arbuscularの生産するroridin 類について2018

    • Author(s)
      松本愛美、橋本勝
    • Organizer
      日本農芸化学会2018年度大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 6置換スピロシクロプロパンを有するcyclohelminthol X2017

    • Author(s)
      田中静也, 本村優奈, 上杉祥太, 福士江里, 田中和明, 前多隼人,木村賢一, 根平達夫, 橋本勝
    • Organizer
      第12回化学生態学研究会
    • Related Report
      2017 Annual Research Report
  • [Presentation] [4.4.3]Propellane型メロテルペンneomacrophorin Xの構造2017

    • Author(s)
      橋本勝, 日下部一晃, 上杉祥太, 本村優奈, 殿内暁夫, 木村賢一, 前多隼人, 越野広雪
    • Organizer
      第12回化学生態学研究会
    • Related Report
      2017 Annual Research Report
  • [Presentation] [4.4.3]Propellane型メロテルペンneomacrophorin Xの構造2017

    • Author(s)
      橋本 勝, 日下部 一晃, 上杉 祥太, 本村 優奈, 殿内 暁夫, 木村 賢一, 前多 隼人,越野 広雪
    • Organizer
      第59回天然有機化合物討論会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Cyclohelminthol X の構造、生理活性 、生合成2017

    • Author(s)
      橋本勝
    • Organizer
      シンポジウム「天然物化学の新展開」
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Computer Assisted Structural Elucidation of Natural Products; neomacrophorin X and cyclohelmintol X2017

    • Author(s)
      Masaru Hashimoto
    • Organizer
      MSU Chemistry department seminar
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Cyclohelminthol Y の構造2017

    • Author(s)
      田中静也、橋本勝
    • Organizer
      2017年度 日本農芸化学会東北支部大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 12-deoxyroridin 類の単離2017

    • Author(s)
      松本 愛美、殿内暁夫、前多隼人、橋本勝
    • Organizer
      2017年度 日本農芸化学会東北支部大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 計算機支援による天然物の構造決定2017

    • Author(s)
      橋本勝
    • Organizer
      熊本大学薬学部講演会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 計算機支援による天然物の構造決定2017

    • Author(s)
      橋本勝
    • Organizer
      東北大学理学部化学科講演会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] マメゾウムシ蛹室由来の新規化学成分の構造と生理活性2017

    • Author(s)
      原内優衣,村中恭,紙川小百合,太田恵美,根平達夫,大村尚,太田伸二
    • Organizer
      第59回天然有機化合物討論会
    • Related Report
      2017 Annual Research Report
  • [Presentation] ネオマクロフォリン類の単離・構造決定及び生理活性2016

    • Author(s)
      橋本勝、広瀬あかね、本村優奈、日下部一晃、上杉祥太、殿内暁夫、前多隼人、根平達夫、木村賢一
    • Organizer
      第58回天然有機化合物討論会
    • Place of Presentation
      仙台国際センター(仙台市)
    • Year and Date
      2016-09-14
    • Related Report
      2016 Research-status Report
  • [Presentation] Norleptosphol Cの合成研究2016

    • Author(s)
      竹田珠実、橋本 勝
    • Organizer
      日本農芸化学会東北支部151大会
    • Place of Presentation
      山形大学(鶴岡市)
    • Related Report
      2016 Research-status Report
  • [Presentation] 新規neomacrophorin類の構造決定2016

    • Author(s)
      日下部一晃、本村優奈、殿内暁夫、橋本 勝
    • Organizer
      日本農芸化学会東北支部151大会
    • Place of Presentation
      山形大学(鶴岡市)
    • Related Report
      2016 Research-status Report
  • [Presentation] Cyclohelmintol Xの構造2016

    • Author(s)
      田中静也、本村優奈、橋本 勝、福士江里
    • Organizer
      日本農芸化学会東北支部151大会
    • Place of Presentation
      山形大学(鶴岡市)
    • Related Report
      2016 Research-status Report
  • [Presentation] Neomacrophorin Xの構造2016

    • Author(s)
      橋本 勝、日下部一晃、殿内暁夫、越野広雪
    • Organizer
      日本農芸化学会東北支部151大会
    • Place of Presentation
      山形大学(鶴岡市)
    • Related Report
      2016 Research-status Report

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Published: 2016-04-21   Modified: 2019-03-29  

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