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Development of Indel markers and the estimation of gene flow and admixture in cattle

Research Project

Project/Area Number 16K15025
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Animal production science
Research InstitutionKobe University

Principal Investigator

Mannen Hideyuki  神戸大学, 農学研究科, 教授 (20263395)

Co-Investigator(Kenkyū-buntansha) 下桐 猛  鹿児島大学, 農水産獣医学域農学系, 准教授 (40315403)
笹崎 晋史  神戸大学, 農学研究科, 准教授 (50457115)
Project Period (FY) 2016-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2017: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2016: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywordsウシ / Indel / 起源 / 遺伝的流入 / 遺伝的混在 / 遺伝的構造 / Indelマーカー / 北方系牛 / インド系牛 / 系統分化 / 分岐年代推定 / 育種
Outline of Final Research Achievements

Aims of this study are development of Indel markers and estimation of gene flow and admixture in cattle. After we carried out whole genome resequencing for zebu cattle, we developed 58 Indel markers. We performed population analysis for Bos taurus and Bos indicus populations using these markers. The results showed that Bos indicus have had gene flow and genetic admixture from Bos taurus in early domestication period.

Report

(3 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • Research Products

    (8 results)

All 2018 2017 2016

All Journal Article (3 results) (of which Peer Reviewed: 3 results) Presentation (4 results) (of which Int'l Joint Research: 3 results) Book (1 results)

  • [Journal Article] Application of DNA markers for discrimination between Japanese and Australian Wagyu beef2018

    • Author(s)
      Kawaguchi, F., Kitamura Y., Nakajima R., Takahashi M., Goto H., Washida Y., Yamamoto Y., Sasazaki S., and Mannnen H.
    • Journal Title

      Animal Science Journal

      Volume: 89 Issue: 1 Pages: 257-258

    • DOI

      10.1111/asj.12938

    • NAID

      120006601535

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The mtDNA haplogroup P of modern Asian cattle: A genetic legacy of Asian aurochs?2018

    • Author(s)
      Noda Aoi、Yonesaka Riku、Sasazaki Shinji、Mannen Hideyuki
    • Journal Title

      PLOS One

      Volume: 13 Issue: 1 Pages: e0190937-e0190937

    • DOI

      10.1371/journal.pone.0190937

    • NAID

      120006382348

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Low mitochondrial DNA diversity of Japanese Polled and Kuchinoshima feral cattle2017

    • Author(s)
      Mannen Hideyuki、Yonesaka Riku、Noda Aoi、Shimogiri Takeshi、Oshima Ichiro、Katahira Kiyomi、Kanemaki Misao、Kunieda Tetsuo、Inayoshi Yousuke、Mukai Fumio、Sasazaki Shinji
    • Journal Title

      Anim. Sci. J.

      Volume: 88 Issue: 5 Pages: 739-744

    • DOI

      10.1111/asj.12716

    • NAID

      120006601534

    • Related Report
      2017 Annual Research Report 2016 Research-status Report
    • Peer Reviewed
  • [Presentation] Genetic structure and relationships among 11 cattle populations using indel markers2017

    • Author(s)
      Yamanaka H, Sasazaki S, Lwin M, Moe H, Shimogiri T, Mannen H
    • Organizer
      36th International Society for Animal Genetics Conference. Dublin, Ireland
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Phylogenetic analysis of Kazakhstani goats using mtDNA HV1 and SRY gene sequences2017

    • Author(s)
      Tabata R, Sasazaki S, Bakhtin M, Kazymbet P, Alyan M, Suleimenov M, Nishibori M, Mannen H
    • Organizer
      International Society for Animal Genetics Conference. Dublin, Ireland
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Indelマーカーを用いた家畜ウシ11集団に対する遺伝的構造および系統解析2017

    • Author(s)
      山中颯・笹崎晋史・Hla Hla Moe・Moe Lwin・下桐猛・万年英之
    • Organizer
      第67回関西畜産学会大会, 大阪
    • Related Report
      2017 Annual Research Report
  • [Presentation] Genetic diversity and origin of mtDNA haplogroup P observed in Japanese Shorthorn2016

    • Author(s)
      Noda A, Sasazaki S, Mannen H
    • Organizer
      35th International Society for Animal Genetics Conference
    • Place of Presentation
      Salt Lake City, UT, USA
    • Year and Date
      2016-07-23
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Book] 動物遺伝育種学2017

    • Author(s)
      万年英之 他
    • Total Pages
      204
    • Publisher
      朝倉書店
    • Related Report
      2016 Research-status Report

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Published: 2016-04-21   Modified: 2019-03-29  

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