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Molecular mechanism of TREK-1 channel for

Research Project

Project/Area Number 16K15179
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field General physiology
Research InstitutionUniversity of Fukui

Principal Investigator

Oiki Shigetoshi  福井大学, 学術研究院医学系部門, 教授 (10185176)

Project Period (FY) 2016-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Fiscal Year 2017: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2016: ¥2,990,000 (Direct Cost: ¥2,300,000、Indirect Cost: ¥690,000)
Keywordsイオンチャネル / 脂質2重膜 / リン脂質 / コレステロール / in vitro転写/翻訳 / 脂質二重膜 / 膜張力 / in vitro転写・翻訳系 / 脂質平面膜 / カリウムチャネル / イオン透過 / 蛋白質 / 薬理学 / 生理学
Outline of Final Research Achievements

To study channel-lipid interplay in the lipid bilayer membrane, we developed several basic methods using the contact bubble bilayer (CBB) method. For the CBB, in vitro transcription/translation system was used, and the KcsA channel proteins were inserted, folded and assembled as functional channels detected as single channel currents. This system provides a versatile platform for channel protein expression-functional studies including the TREK-1 channel. CBB allowed formation of lipid bilayer with arbitrary lipid composition, and we developed the rapid perfusion method. The KcsA potassium channel closed its activation gate upon cholesterol perfusion, and stopping the perfusion led recovery of the channel activity because of dilution of cholesterol in the bilayer. Repeated on and off of the perfusion produced repeated activation and deactivation of the channel gating. This system allows examinations of hydrophobic drug actions to channel proteins.

Report

(3 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • Research Products

    (18 results)

All 2018 2017 2016

All Journal Article (10 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 9 results,  Open Access: 7 results,  Acknowledgement Compliant: 4 results) Presentation (4 results) (of which Int'l Joint Research: 1 results,  Invited: 2 results) Book (1 results) Patent(Industrial Property Rights) (3 results)

  • [Journal Article] Concurrent In Vitro Synthesis and Functional Detection of Nascent Activity of the KcsA Channel under a Membrane Potential2018

    • Author(s)
      Iwamoto M, Elfaramawy MA, Yamatake M, Matsuura T, Oiki S
    • Journal Title

      ACS Synthetic Biology

      Volume: 7 Issue: 4 Pages: 1004-1011

    • DOI

      10.1021/acssynbio.7b00454

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Structure and dynamics of solvent molecules inside the polytheonamide B channel in different environments: a molecular dynamics study2018

    • Author(s)
      Kalathingal Mahroof、Sumikama Takashi、Mori Toshifumi、Oiki Shigetoshi、Saito Shinji
    • Journal Title

      Physical Chemistry Chemical Physics

      Volume: 20 Issue: 5 Pages: 3334-3348

    • DOI

      10.1039/c7cp06299k

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Lipid Bilayers Manipulated through Monolayer Technologies for Studies of Channel-Membrane Interplay2018

    • Author(s)
      Oiki S, Iwamoto M
    • Journal Title

      Biological and Pharmaceutical Bulletin

      Volume: 41 Issue: 3 Pages: 303-311

    • DOI

      10.1248/bpb.b17-00708

    • NAID

      130006407489

    • ISSN
      0918-6158, 1347-5215
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Entrance of Channel Determines Ion Permeation Rate through the Kv1.2 Channel2018

    • Author(s)
      炭竈 享司、老木 成稔
    • Journal Title

      Seibutsu Butsuri

      Volume: 58 Issue: 1 Pages: 012-016

    • DOI

      10.2142/biophys.58.012

    • NAID

      130006322043

    • ISSN
      0582-4052, 1347-4219
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Channel Formation and Membrane Deformation via Sterol-Aided Polymorphism of Amphidinol 32017

    • Author(s)
      Iwamoto M, Sumino A, Shimada E, Kinoshita M, Matsumori N, Oiki S
    • Journal Title

      Scientific Reports

      Volume: 7 Issue: 1 Pages: 10782-10782

    • DOI

      10.1038/s41598-017-11135-x

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Membrane Perfusion of Hydrophobic Substances Around Channels Embedded in the Contact Bubble Bilayer2017

    • Author(s)
      Iwamoto M, Oiki S
    • Journal Title

      Scientific Reports

      Volume: 7 Issue: 1 Pages: 6857-6857

    • DOI

      10.1038/s41598-017-07048-4

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Oriented Reconstitution of the Full-Length KcsA Potassium Channel in a Lipid Bilayer for AFM Imaging2017

    • Author(s)
      Ayumi Sumino, Takayuki Uchihashi and Shigetoshi Oiki
    • Journal Title

      J. Phys. Chem. Lett.

      Volume: 8 Issue: 4 Pages: 785-793

    • DOI

      10.1021/acs.jpclett.6b03058

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] 生物物理学会における多様性2017

    • Author(s)
      豊島 有、飯野 雄一
    • Journal Title

      Seibutsu Butsuri

      Volume: 57 Issue: 1 Pages: 001-001

    • DOI

      10.2142/biophys.57.001

    • NAID

      130005296440

    • ISSN
      0582-4052, 1347-4219
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Rectified Proton Grotthuss Conduction Across a Long Water-Wire in the Test Nanotube of the Polytheonamide B Channel.2016

    • Author(s)
      Matsuki, Y., Iwamoto, M. Mita, K., Shigemi, K., Matsunaga, S., and Oiki
    • Journal Title

      J. Am. Chem. Soc.

      Volume: 138 Issue: 12 Pages: 4168-4177

    • DOI

      10.1021/jacs.5b13377

    • NAID

      120006226473

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Digitalized K+ Occupancy in the Nanocayity Holds and Relases Queues of K+ in a Channel.2016

    • Author(s)
      Sumikama,T. and Oiki,S.
    • Journal Title

      J.Am.Chem.Soc.

      Volume: 138 Issue: 32 Pages: 10284-10292

    • DOI

      10.1021/jacs.6b05270

    • Related Report
      2016 Research-status Report
    • Open Access / Acknowledgement Compliant
  • [Presentation] コレステロールがKcsAカリウムチャネル機能に及ぼす影響(Effects of cholesterol on the function of the KcsA potassium channel)2017

    • Author(s)
      岩本真幸、老木成稔
    • Organizer
      第94回日本生理学会大会(アクトシティ浜松、浜松)
    • Related Report
      2017 Annual Research Report
  • [Presentation] 脂質二重膜がカリウムチャネル開閉に及ぼす多様な影響(Specific and non-specific actions of membrane lipids on the gating of the potassium channel)2017

    • Author(s)
      岩本真幸、老木成稔
    • Organizer
      日本生物物理学会第55回年会(熊本大学、熊本)シンポジウム「いろんなスケールで働く膜タンパク質の作動原理:実験と理論の新展開(Operating principles of membrane proteins at multiscale resolutions)」
    • Related Report
      2017 Annual Research Report
  • [Presentation] KcsAカリウムチャネル膜相と作用のための一分子実験法2017

    • Author(s)
      老木成稔
    • Organizer
      蛋白研セミナー(招待講演)
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Ion Permeation and Gating of the KcsA Potassium Channel Reconstituted in the Manipulated Membrane.2017

    • Author(s)
      Oiki,S.
    • Organizer
      Ion Channel Modulation Symposium,Cambridge,UK (招待講演) (国際学会)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Book] Reference Module in Life Sciences.2016

    • Author(s)
      Oiki,S.
    • Publisher
      Dynanids of the Potassium Channel Pore.
    • Related Report
      2016 Research-status Report
  • [Patent(Industrial Property Rights)] 接触液胞2重膜法による膜物性変化の実時間測定法2017

    • Inventor(s)
      老木 成稔・岩本真幸
    • Industrial Property Rights Holder
      老木 成稔・岩本真幸
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2017-246976
    • Filing Date
      2017
    • Related Report
      2017 Annual Research Report
  • [Patent(Industrial Property Rights)] 脂質二重膜形成装置、脂質二重膜形成方法、および評価システム2017

    • Inventor(s)
      老木 成稔・岩本真幸
    • Industrial Property Rights Holder
      老木 成稔・岩本真幸
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2017-063796
    • Filing Date
      2017
    • Related Report
      2017 Annual Research Report
  • [Patent(Industrial Property Rights)] 脂質二重膜形成器2017

    • Inventor(s)
      老木 成稔・岩本真幸
    • Industrial Property Rights Holder
      老木 成稔・岩本真幸
    • Industrial Property Rights Type
      意匠
    • Filing Date
      2017
    • Acquisition Date
      2017
    • Related Report
      2017 Annual Research Report

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Published: 2016-04-21   Modified: 2019-03-29  

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