• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Compression stress induced deformation of microtubule on an elastic medium

Research Project

Project/Area Number 16K16383
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Biomedical engineering/Biomaterial science and engineering
Research InstitutionHokkaido University

Principal Investigator

KABIR ARIF MD RASHEDUL  北海道大学, 理学研究院, 特任助教 (10724867)

Project Period (FY) 2016-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2017: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2016: ¥3,250,000 (Direct Cost: ¥2,500,000、Indirect Cost: ¥750,000)
KeywordsMicrotubule / Mechanical deformation / Buckling / Compression stress / Elastic medium / 人間医工学 / バイオメカニクス
Outline of Final Research Achievements

Using a custom made compression chamber deformation of microtubules under compression stress has been explored and their buckling mechanism has been unveiled. Buckling of microtubules is found to be a continuous process. Presence of an elastic medium surrounding the microtubules has a great influence on the extent of buckling. Strong interaction with the elastic medium causes short-wavelength multiwave buckling of microtubules, whereas long-wavelength Euler type buckling occurs when the interaction of microtubules with their surrounding elastic medium is weak. Moreover, it was also understood that, while accounting the buckling deformation mechanism of microtubules, any effect of associated proteins on the mechanical property of microtubules must be taken into consideration. From simulation based studies, we revealed that mode of interaction of microtubules with the surrounding elastic medium is another factor that regulates the buckling deformation mechanism of microtubules.

Report

(3 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • Research Products

    (21 results)

All 2017 2016

All Journal Article (2 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 2 results,  Acknowledgement Compliant: 2 results,  Open Access: 1 results) Presentation (19 results) (of which Int'l Joint Research: 5 results,  Invited: 2 results)

  • [Journal Article] Buckling of microtubules on elastic media via breakable bonds2016

    • Author(s)
      Tanjina Afrin, Arif Md. Rashedul Kabir, Kazuki Sada, Akira Kakugo, Takahiro Nitta
    • Journal Title

      Biochemical and Biophysical Research Communications (BBRC)

      Volume: 480 Issue: 1 Pages: 132-138

    • DOI

      10.1016/j.bbrc.2016.09.133

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Sensing Surface Mechanical Deformation Using Active Probes Driven by Motor Proteins2016

    • Author(s)
      Daisuke Inoue, Takahiro Nitta, Arif Md. Rashedul Kabir, Kazuki Sada, Jian Ping Gong, Akihiko Konagaya, and *Akira Kakugo
    • Journal Title

      Nature communications

      Volume: 7 Issue: 1 Pages: 1-10

    • DOI

      10.1038/ncomms12557

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Presentation] Biomolecular motor powered molecular robots2017

    • Author(s)
      Arif Md. Rashedul Kabir, Akira Kakugo
    • Organizer
      Workshop on molecular robotics
    • Place of Presentation
      Koshiba Hall, Hongo Campus, University of Tokyo, Bunkyo-ku, Tokyo
    • Year and Date
      2017-03-11
    • Related Report
      2016 Research-status Report
  • [Presentation] Behavior of microtubule collective motion induced by depletion force2017

    • Author(s)
      Ai Saito, Ryuhei Suzuki, Tamanna Ishrat Farhana, Arif Md. Rashedul Kabir, Kazuki Sada, Akira Kakugo
    • Organizer
      Winter meeting, Hokkaido Branch, SPSJ
    • Place of Presentation
      Hokkaido University, Sapporo, Hokkaido
    • Year and Date
      2017-01-19
    • Related Report
      2016 Research-status Report
  • [Presentation] Buckling of Microtubules on an Elastic Medium2016

    • Author(s)
      Arif Md. Rashedul Kabir, Tanjina Afrin, Kazuki Sada, Akira Kakugo
    • Organizer
      The 17th RIES-HOKUDAI INTERNATIONAL SYMPOSIUM
    • Place of Presentation
      Chateraise Gateaux Kingdom, Sapporo, Hokkaido
    • Year and Date
      2016-12-13
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Dynamic Behavior of Swarm Microtubules Driven by Kinesins2016

    • Author(s)
      Arif Md. Rashedul Kabir
    • Organizer
      The 6th Soft Matter Symposium
    • Place of Presentation
      Hokkaido University, Sapporo, Hokkaido
    • Year and Date
      2016-10-24
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] Mechanical Deformation Induced Modulation of Biochemical Functions of Microtubules2016

    • Author(s)
      Tanjina Afrin, Arif Md. Rashedul Kabir, Kazuki Sada, Akira Kakugo
    • Organizer
      The 6th Soft Matter Symposium
    • Place of Presentation
      Hokkaido University, Sapporo, Hokkaido
    • Year and Date
      2016-10-24
    • Related Report
      2016 Research-status Report
  • [Presentation] Collective Motion of Microtubules with Different Lengths and Rigidity2016

    • Author(s)
      Tamanna Ishrat Farhana, Arif Md. Rashedul Kabir, Daisuke Inoue, Kazuki Sada, Akira Kakugo
    • Organizer
      The 6th Soft Matter Symposium
    • Place of Presentation
      Hokkaido University, Sapporo, Hokkaido
    • Year and Date
      2016-10-24
    • Related Report
      2016 Research-status Report
  • [Presentation] Response behavior of microtubules to external mechanical stimuli2016

    • Author(s)
      Seiji Nishikawa, Tanjina Afrin, Arif Md. Rashedul Kabir, Kazuki Sada, Akira Kakugo
    • Organizer
      The 6th Soft Matter Symposium
    • Place of Presentation
      Hokkaido University, Sapporo, Hokkaido
    • Year and Date
      2016-10-24
    • Related Report
      2016 Research-status Report
  • [Presentation] Controlling the direction of microtubule assembly using photoresponsive DNA2016

    • Author(s)
      Ryuhei Suzuki, Daisuke Inoue, Arif Md. Rashedul Kabir, Kazuki Sada, Akinori Kuzuya, Hiroyuki Asanuma, Akira Kakugo
    • Organizer
      The 6th Soft Matter Symposium
    • Place of Presentation
      Hokkaido University, Sapporo, Hokkaido
    • Year and Date
      2016-10-24
    • Related Report
      2016 Research-status Report
  • [Presentation] DNA assisted control of swarming of a biomolecular motor system2016

    • Author(s)
      Jakia Jannat Keya, Arif Md. Rashedul Kabir, Daisuke Inoue, Kazuki Sada, Akinori Kuzuya, Akira Kakugo
    • Organizer
      The 6th Soft Matter Symposium
    • Place of Presentation
      Hokkaido University, Sapporo, Hokkaido
    • Year and Date
      2016-10-24
    • Related Report
      2016 Research-status Report
  • [Presentation] Reproduction and motility control of cilia structure in vitro2016

    • Author(s)
      Ren Sasaki, Shoki Wada, Daisuke Inoue, Arif Md. Rashedul Kabir, Kazuki Sada, Akira Kakugo
    • Organizer
      The 6th Soft Matter Symposium
    • Place of Presentation
      Hokkaido University, Sapporo, Hokkaido
    • Year and Date
      2016-10-24
    • Related Report
      2016 Research-status Report
  • [Presentation] Mechanical Oscillation of Dynamic Microtubule Rings2016

    • Author(s)
      Masaki Ito, Arif Md. Rashedul Kabir, Md. Sirajul Islam, Daisuke Inoue, Shoki Wada, Kazuki Sada, Akihiko Konagaya, Akira Kakugo
    • Organizer
      The 6th Soft Matter Symposium
    • Place of Presentation
      Hokkaido University, Sapporo, Hokkaido
    • Year and Date
      2016-10-24
    • Related Report
      2016 Research-status Report
  • [Presentation] Regulatory Effects of ROS on the Dynamic Instability of Microtubules2016

    • Author(s)
      Md. Sirajul Islam, Arif Md. Rashedul Kabir, Daisuke Inoue, Kazuki Sada, Akira Kakugo
    • Organizer
      The 6th Soft Matter Symposium
    • Place of Presentation
      Hokkaido University, Sapporo, Hokkaido
    • Year and Date
      2016-10-24
    • Related Report
      2016 Research-status Report
  • [Presentation] Effect of microtubule concentration and depletion force on the emergence of collective motion of microtubules2016

    • Author(s)
      Ai Saito, Ryuhei Suzuki, Tamanna Ishrat Farhana, Arif Md. Rashedul Kabir, Kazuki Sada, Akira Kakugo
    • Organizer
      The 6th Soft Matter Symposium
    • Place of Presentation
      Hokkaido University, Sapporo, Hokkaido
    • Year and Date
      2016-10-24
    • Related Report
      2016 Research-status Report
  • [Presentation] Effect of Mechanical Deformation of Microtubules on Motor Protein Based Cargo Transportation2016

    • Author(s)
      Tanjina Afrin, Daisuke Inoue, Arif Md. Rashedul Kabir, Kazuki Sada, Akira Kakugo
    • Organizer
      The 6th Soft Matter Symposium
    • Place of Presentation
      Hokkaido University, Sapporo, Hokkaido
    • Year and Date
      2016-10-24
    • Related Report
      2016 Research-status Report
  • [Presentation] Buckling of microtubules on a 2D elastic medium2016

    • Author(s)
      Arif Md. Rashedul Kabir, Daisuke Inoue, Kazuki Sada, Akira Kakugo
    • Organizer
      The 67th Divisional Meeting on Colloid and Interface Chemistry
    • Place of Presentation
      Hokkaido University of Education, Asahikawa, Hokkaido
    • Year and Date
      2016-09-22
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Controlling the direction of motion of nanoshuttles through photoregulation of their self-organization2016

    • Author(s)
      Ryuhei Suzuki, Kyohei Uenishi, Jakia Jannat Keya, Arif Md. Rashedul Kabir, Daisuke Inoue, Kazuki Sada, Akinori Kuzuya, Hiroyuki Asanuma, Akira Kakugo
    • Organizer
      The 67th Divisional Meeting on Colloid and Interface Chemistry
    • Place of Presentation
      Hokkaido University of Education, Asahikawa, Hokkaido
    • Year and Date
      2016-09-22
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Development of a Self-Propelled Motor by Utilizing Oscillatory Beating of Artificial Cilia2016

    • Author(s)
      R. Sasaki, S. Wada, D. Inoue, A. M. R. Kabir, K. Sada, A. Kakugo
    • Organizer
      The 67th Divisional Meeting on Colloid and Interface Chemistry
    • Place of Presentation
      Hokkaido University of Education, Asahikawa, Hokkaido
    • Year and Date
      2016-09-22
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Mechanical response of microtubules and modulation of its biochemical functionality2016

    • Author(s)
      Akira Kakugo, Tanjina Afrin, Arif Md. Rashedul Kabir, Kazuki Sada
    • Organizer
      65th Annual meeting of The Japan Society for Analytical Chemistry
    • Place of Presentation
      Hokkaido University, Sapporo, Hokkaido
    • Year and Date
      2016-09-15
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] Compression Stress Induced Buckling of Microtubule and It’s Effect on Kinesin-based Cargo Transportation in vitro2016

    • Author(s)
      Akira Kakugo, Arif Md. Rashedul Kabir, Tanjina Afrin, Daisuke Inoue, Kazuki Sada
    • Organizer
      Biophysical Society Thematic Meeting-Engineering Approaches to Biomolecular Motors: From in vitro to in vivo
    • Place of Presentation
      Vancouver, CANADA
    • Year and Date
      2016-06-14
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research

URL: 

Published: 2016-04-21   Modified: 2019-03-29  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi