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Study for screening and selection of unexplored peptide sequence space based on a quantitative evaluation using a high-density peptide array

Research Project

Project/Area Number 16K16644
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Chemical biology
Research InstitutionKawasaki Institute of Industrial Promotion Innovation Center of NanoMedicine

Principal Investigator

Ueno Shingo  公益財団法人川崎市産業振興財団(ナノ医療イノベーションセンター), ナノ医療イノベーションセンター, 副主幹研究員 (30594650)

Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2018: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2017: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2016: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Keywordsペプチドアレイ / スクリーニング / ペプチド医薬 / 活性測定 / ペプチドライブラリー / 無細胞合成 / マイクロアレイ / Sortase / ペプチドリガンド / 進化分子工学 / ペプチド / GPCR
Outline of Final Research Achievements

The technique for co-immobilization of the cell-free synthesized peptide and its DNA on a solid-phase have been developed for the screening of functional peptide using high-density peptide array, which is fabricated by on-chip cell-free translation reaction. The cell-free synthesized kinase, which was used instead of peptide for verification, have been successfully immobilized on the solid-phase via a solid-phase-immobilized DNA during the cell-free synthesis reaction by using transpeptidase sortase.
Additionally, the technique for spatiotemporal synchronization of initiation of enzyme reaction with initiation of measurement of the reaction have been investigated. We succeed the control of initiation and progression of enzyme reaction using caged-substrate and photo-irradiation. This technique enables precise measurement of on-chip enzyme reaction for the screening of enzyme-related peptide without injection of a reagent.

Academic Significance and Societal Importance of the Research Achievements

従来、ペプチド医薬品等で使われる機能性ペプチドの初期スクリーニングは、ペプチドと標的分子の結合能を指標として行われている。本研究では、ライブラリー中の個々のペプチドの活性・機能を直接測定し、その測定結果を元にペプチドをスクリーニングするための技術を開発した。本研究で開発した技術を発展させることで、ペプチド医薬品等に使われる機能性ペプチドの開発効率の向上に繋がるものと期待される。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (31 results)

All 2019 2018 2017 2016

All Journal Article (2 results) (of which Peer Reviewed: 2 results,  Open Access: 2 results) Presentation (28 results) (of which Int'l Joint Research: 10 results,  Invited: 2 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Fluorometric Measurement of Adenosine 5'-Triphosphate Using Exonuclease V Activity2018

    • Author(s)
      Shingo Ueno, Mika Shioya, Takanori Ichiki
    • Journal Title

      Journal of Photopolymer Science and Technology

      Volume: 31 Issue: 6 Pages: 699-704

    • DOI

      10.2494/photopolymer.31.699

    • NAID

      130007603708

    • ISSN
      0914-9244, 1349-6336
    • Year and Date
      2018-12-15
    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Phototriggered Control of Enzyme Reactions toward High-throughput Screening on a Microwell Array Chip2017

    • Author(s)
      Shingo Ueno, Takanori Ichiki
    • Journal Title

      Journal of Photopolymer Science and Technology

      Volume: 30 Issue: 6 Pages: 657-660

    • DOI

      10.2494/photopolymer.30.657

    • NAID

      130006309155

    • ISSN
      0914-9244, 1349-6336
    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] Development of the high-density microwell array-based protein screening system2019

    • Author(s)
      Shingo Ueno, Shusuke Sato, Mika Shioya, Yui Shirakata, Shoichi Tsuchiya, Takanori Ichiki
    • Organizer
      12th Annual Symposium on Nanobiotechnology
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Fabrication of a transpeptinase-mediated protein microarray by microintaglio printing2018

    • Author(s)
      Yui Shirakata, Ryo Wakai, Shingo Ueno, Takanori Ichiki
    • Organizer
      31st International Microprocesses and Nanotechnology Conference
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Development of high-density microarray-based aptamer screening system2018

    • Author(s)
      Ankita Jain, Shingo Ueno, Shusuke Sato, Takanori Ichiki
    • Organizer
      31st International Microprocesses and Nanotechnology Conference
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Fluorescence-based ATP detection method for measurement on a microwell array chip2018

    • Author(s)
      Shingo Ueno, Shusuke Sato, Mika Shioya, Takanori Ichiki
    • Organizer
      35rd International Conference of Photopolymer Science and Technology
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Development of DNA aptamer screening system based on high-density microarray platform2018

    • Author(s)
      Ankita Jain, Shingo Ueno, Shusuke Sato, Takanori Ichiki
    • Organizer
      35rd International Conference of Photopolymer Science and Technology
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Sortaseを用いたロバストなタンパク質マイクロアレイの作製2018

    • Author(s)
      白形優依, 若井涼, 上野真吾, 一木隆範
    • Organizer
      第66回応用物理学会 春季学術講演会
    • Related Report
      2018 Annual Research Report
  • [Presentation] ペプチド連結酵素を用いたタンパク質マイクロアレイの作製2018

    • Author(s)
      白形優依, 若井涼, 上野真吾, 一木隆範
    • Organizer
      第79回応用物理学会 秋季学術講演会
    • Related Report
      2018 Annual Research Report
  • [Presentation] マイクロリアクターアレイチップの表面改質2018

    • Author(s)
      佐藤秀介, 上野真吾, 一木隆範
    • Organizer
      第79回応用物理学会秋季学術講演会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 高集積マイクロウェルアレイシステムによるネオバイオ分子創出2018

    • Author(s)
      上野真吾、一木隆範
    • Organizer
      日本農芸化学会2018年度大会
    • Related Report
      2017 Research-status Report
    • Invited
  • [Presentation] ペプチド連結酵素による共有結合を利用したタンパク質その場固定化技術の開発2018

    • Author(s)
      若井涼、上野真吾、白形優依、一木隆範
    • Organizer
      第65回応用物理学会春季学術講演会
    • Related Report
      2017 Research-status Report
  • [Presentation] 集積回路上へのエラストマー製マイクロウェルアレイ形成に関する基礎検討2017

    • Author(s)
      白形優衣、竹原宏明、上野真吾、一木隆範
    • Organizer
      第64回 応用物理学会春季学術講演会
    • Place of Presentation
      神奈川県横浜市、パシフィコ横浜
    • Year and Date
      2017-03-14
    • Related Report
      2016 Research-status Report
  • [Presentation] ペプチド連結酵素を用いたタンパク質のその場合成・固定化技術2017

    • Author(s)
      若井涼、上野真吾、一木隆範
    • Organizer
      第 64 回応用物理学会春季学術講演会
    • Place of Presentation
      神奈川県横浜市、パシフィコ横浜
    • Year and Date
      2017-03-14
    • Related Report
      2016 Research-status Report
  • [Presentation] ネオバイオ分子のin vitroセレクションからon chip セレクションへ2017

    • Author(s)
      上野真吾
    • Organizer
      2017年度 生命科学系学会合同年次大会
    • Related Report
      2017 Research-status Report
    • Invited
  • [Presentation] Spatiotemporal phototriggered control of biochemical reactions for on-chip ultrahigh-throughput screening of enzyme activities2017

    • Author(s)
      Shingo Ueno, Takanori Ichiki
    • Organizer
      The 21th International Conference on Miniaturized Systems for Chemistry and Life Sciences
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] In situ covalent immobilization of protein on a chip by sortase-mediated peptide ligation2017

    • Author(s)
      Ryo Wakai, Shingo Ueno, Takanori Ichiki
    • Organizer
      The 21th International Conference on Miniaturized Systems for Chemistry and Life Sciences
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] Photo-assisted control of the initiation of enzyme reaction2017

    • Author(s)
      Shingo Ueno, Shusuke Sato, Takanori Ichiki
    • Organizer
      34rd International Conference of Photopolymer Science and Technology
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] 人工生体分子創製を目的とした高集積マイクロウェルアレイシステム2017

    • Author(s)
      上野真吾、佐藤秀介、塩谷美夏、飯塚怜、ジェーンアンキタ、若井涼、白形優依、船津高志、一木隆範
    • Organizer
      理研/iCONM/物材機構 医工学ネットワーク
    • Related Report
      2017 Research-status Report
  • [Presentation] マイクロアレイでの分子セレクション技術の開発2017

    • Author(s)
      上野真吾、佐藤秀介、若井涼、塩谷美夏、一木隆範
    • Organizer
      2017年度 生命科学系学会合同年次大会
    • Related Report
      2017 Research-status Report
  • [Presentation] Fundamental study for quantitative screening of mutant proteins on a glass-made microwell array chip2017

    • Author(s)
      Shusuke Sato, Ankita Jain, Hiromi Kuramochi, Shingo Ueno, Takanori Akagi, Takanori Ichiki
    • Organizer
      第27回日本MRS年次大会
    • Related Report
      2017 Research-status Report
  • [Presentation] Development of quantitative aptamer screening using a microarray chip2017

    • Author(s)
      Ankita Jain, Shingo Ueno, Shusuke Sato, Takanori Ichiki
    • Organizer
      第27回日本MRS年次大会
    • Related Report
      2017 Research-status Report
  • [Presentation] In situ covalent immobilization of peptide on glass substrate using transpeptidase sortase2017

    • Author(s)
      Ryo Wakai, Shingo Ueno, Takanori Ichiki
    • Organizer
      第27回日本MRS年次大会
    • Related Report
      2017 Research-status Report
  • [Presentation] Effects of surface modification of reactor materials on cell-free synthesis2017

    • Author(s)
      Yui Shirakata, Shingo Ueno, Takanori Ichiki
    • Organizer
      第27回日本MRS年次大会
    • Related Report
      2017 Research-status Report
  • [Presentation] Development of high-density microarray technology for DNA aptamer screening using self-assembled beads2016

    • Author(s)
      Ankita Jain, Shingo Ueno, Shusuke Sato, Takanori Ichiki
    • Organizer
      33rd International Conference of Photopolymer Science and Technology
    • Place of Presentation
      千葉県千葉市 幕張メッセ国際展示場
    • Year and Date
      2016-06-22
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Large-scale high-density microarray technology for screening of highly diverse protein mutant library2016

    • Author(s)
      Shusuke Sato, Manish Biyani, Shingo Ueno, Ankita Jain, Subhashini Raj Kumal, Hiromi Kuramochi, Takanori Akagi, Takanori Ichiki
    • Organizer
      The 11th Annual IEEE International Conference on Nano/Micro Engineered and Molecular Systems
    • Place of Presentation
      宮城県仙台市、エルパーク仙台 / 宮城県松島市、ホテル大観荘
    • Year and Date
      2016-04-17
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] 酵素活性のハイスループットスクリーニングのため のマイクロウェルアレイテクノロジー2016

    • Author(s)
      上野真吾、佐藤秀介、一木隆範
    • Organizer
      第26回日本MRS年次大会
    • Place of Presentation
      神奈川県横浜市、横浜産業貿易センタービル
    • Related Report
      2016 Research-status Report
  • [Presentation] PDMSチップ上で変異体タンパク質の熱安定性を評価する基礎研究2016

    • Author(s)
      佐藤秀介、ジェーンアンキタ、倉持宏美、上野真吾、赤木貴則、一木隆範
    • Organizer
      第26回日本MRS年次大会
    • Place of Presentation
      神奈川県横浜市、横浜産業貿易センタービル
    • Related Report
      2016 Research-status Report
  • [Presentation] 共有結合によるタンパク質のその場合成・固定化法の開発2016

    • Author(s)
      若井涼、上野真吾、一木隆範
    • Organizer
      第26回日本MRS年次大会
    • Place of Presentation
      神奈川県横浜市、横浜産業貿易センタービル
    • Related Report
      2016 Research-status Report
  • [Presentation] 人工分子進化を目的としたマクロアレイシステムの開発2016

    • Author(s)
      上野真吾、佐藤秀介、倉持宏美、ジェーンアンキタ、若井涼、白形優依、赤木貴則、一木隆範
    • Organizer
      電気学会ケミカルセンサ/バイオ・マイクロシステム合同研究会
    • Place of Presentation
      東京都文京区、東京大学工学部
    • Related Report
      2016 Research-status Report
  • [Patent(Industrial Property Rights)] ペプチド-核酸複合体2018

    • Inventor(s)
      上野真吾, 一木隆範
    • Industrial Property Rights Holder
      川崎市産業振興財団
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2018-209874
    • Filing Date
      2018
    • Related Report
      2018 Annual Research Report

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Published: 2016-04-21   Modified: 2020-03-30  

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