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Mode analysis of morphological fluctuation during Hydra regeneration

Research Project

Project/Area Number 16K17781
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Biological physics/Chemical physics/Soft matter physics
Research InstitutionKyoto University

Principal Investigator

Suzuki Ryo  京都大学, 高等研究院, 特定助教 (10768071)

Project Period (FY) 2016-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2018: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2017: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2016: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Keywords再生組織の物理 / 非平衡形状揺らぎ / 対称性の破れ / 自己駆動型粒子
Outline of Final Research Achievements

Body axis formation of an embryo from its initial spherical shape is an important process during the early phases of development. Using a model experimental system Hydra that is frequently used for understanding developmental processes, we studied the "symmetry breaking" phenomenon of body axis formation via mode analysis of morphological fluctuations.
The main results obtained were; (1) we performed mode analysis for regeneration processes of two completely different initial conditions - cut tissue piece and cluster formed by reaggregation of dissociated single cells - and found that there was a common feature for both conditions where mode 0 (mean size) and 2 (axial deformation) became anti-phasic. We defined this attribute as the point of "symmetry breaking". (2) Activation/inhibition of Wnt signalling pathway, a pathway vital for axis formation in Hydra, significantly influenced not only the point of symmetry breaking but also the speed of regeneration and early mouth formation.

Academic Significance and Societal Importance of the Research Achievements

発生生物学の分野では再生過程によって初期の等方的な胚が成体になる要因に注目した研究は数多く報告されてきたが、それらの多くは分子レベルでの操作による要素還元的な手法を用いた記述にとどまり、組織をシステムとして統合的に捉え、対称性の破れの本質を定量的な物理的リードアウトを用いて定量解析する試みはこれまでになかった。そのため、本研究で得られた成果は学術的に非常に重要である。
また社会的意義として、本研究で扱った対称性の破れは再生に限らず原腸胚形成やがん転移などといった細胞極性が大きく変化する過程の理解にも展開可能であり、特に疾患における対称性の破れの本質を理解する上で重要である。

Report

(5 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Research-status Report
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (13 results)

All 2019 2017 2016 Other

All Int'l Joint Research (4 results) Journal Article (1 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 1 results,  Acknowledgement Compliant: 1 results) Presentation (8 results) (of which Int'l Joint Research: 4 results,  Invited: 4 results)

  • [Int'l Joint Research] ハイデルベルク大学(ドイツ)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] ハイデルベルク大学(ドイツ)

    • Related Report
      2018 Research-status Report
  • [Int'l Joint Research] ハイデルベルグ大学(ドイツ)

    • Related Report
      2017 Research-status Report
  • [Int'l Joint Research] ハイデルベルグ大学(ドイツ)

    • Related Report
      2016 Research-status Report
  • [Journal Article] Tracking mechanical and morphological dynamics of regenerating Hydra tissue fragments using a two fingered micro-robotic hand2016

    • Author(s)
      M. Veschgini, F. Gebert, N. Khangai, H. Ito, R. Suzuki, T. W. Holstein, Y. Mae, T. Arai, and M. Tanaka
    • Journal Title

      Applied Physics Letters

      Volume: 108 Issue: 10 Pages: 1037021-4

    • DOI

      10.1063/1.4943402

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Presentation] 細胞集団の自発変形から生命現象を理解する2019

    • Author(s)
      鈴木 量
    • Organizer
      KUIAS-Heidelberg-iTHEMS ワークショップ "数理と医学"
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Deformation as a Quantitative Tool to Understanding Self-Organisation in Multi-cellular Organisms2019

    • Author(s)
      Ryo Suzuki
    • Organizer
      Kyoto Winter School 2019 "Quantifying Dynamics of Life"
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Symmetry Breaking of Regenerating Hydra Tissues2017

    • Author(s)
      Ryo Suzuki, Mariam Veschgini, Thomas W. Holstein and Motomu Tanaka
    • Organizer
      The 4th Research Area Meeting (MEXT Project: Fluctuation and Structure)
    • Related Report
      2017 Research-status Report
  • [Presentation] Symmetry Breaking of Regenerating Hydra Tissues2017

    • Author(s)
      Ryo Suzuki, Mariam Veschgini, Thomas W. Holstein and Motomu Tanaka
    • Organizer
      International Workshop “The diversification of early emerging metazoans: A window into animal evolution”
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] Active deformation and symmetry breaking in regenerating Hydra tissues2017

    • Author(s)
      Ryo Suzuki, Mariam Veschgini, Thomas W. Holstein and Motomu Tanaka
    • Organizer
      MIMS workshop “Modeling and Numerical Analysis of Nonlinear Phenomena: Fluid Dynamics, Motion of Interfaces, and Cell Biology”
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Quantification of Morphological Dynamics and Symmetry Break in Regenerating Hydra Tissues2016

    • Author(s)
      R. Suzuki
    • Organizer
      The 54th Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      Tsukuba, Japan
    • Year and Date
      2016-11-25
    • Related Report
      2016 Research-status Report
  • [Presentation] Experimental investigation of polar pattern formation in driven filament systems through collisions2016

    • Author(s)
      R. Suzuki
    • Organizer
      International Symposium: Current and Future Perspectives in Active Matter
    • Place of Presentation
      Tokyo, Japan
    • Year and Date
      2016-10-28
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Morphological Dynamics and Mechanics of Regenerating Hydra Tissues2016

    • Author(s)
      R. Suzuki
    • Organizer
      The 3rd Research Area Meeting (MEXT Project: Fluctuation and Structure)
    • Place of Presentation
      Fukuoka, Japan
    • Year and Date
      2016-06-17
    • Related Report
      2016 Research-status Report

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Published: 2016-04-21   Modified: 2021-02-19  

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