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Understanding hydraiton-water dynamics related to amyloid fibril formation

Research Project

Project/Area Number 16K17783
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Biological physics/Chemical physics/Soft matter physics
Research InstitutionKobe University

Principal Investigator

Yamamoto Naoki  神戸大学, 理学研究科, 特命助教 (90580671)

Research Collaborator TOMINAGA Keisuke  神戸大学, 分子フォトサイエンス研究センター, 教授 (30202203)
CHATANI Eri  神戸大学, 大学院理学研究科, 准教授 (00432493)
NAKANISHI Masahiko  福岡工業大学, 電気工学科, 助教 (00707763)
Project Period (FY) 2016-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2017: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2016: ¥3,120,000 (Direct Cost: ¥2,400,000、Indirect Cost: ¥720,000)
Keywords広帯域誘電分光 / タンパク質の水和水 / アミロイド線維 / 線維前駆中間体 / 回転緩和 / 誘電緩和 / テラヘルツ時間領域分光 / 水和タンパク質のダイナミクス / 動力学転移 / 生物物理 / タンパク質 / 水和ダイナミクス
Outline of Final Research Achievements

Protein misfolding sometimes results in formation of abnormal aggregation, or amyloid fibril, which are thought to be causes of specified diseases such as generalized amyloidoses. In order to understand the underlying mechanism of the amyloid fibril formation, we scrutinized the dynamics of water around proteins or amyloid fibrils, i.e. hydration water, at gigahertz and terahertz regions. We performed temperature-dependent broadband dielectric spectroscopy in the frequency region by obtaining the complex dielectric spectra. We found that the rotational relaxational mode of hydration water became faster in the fibril state compared to the monomeric normal state while the relaxation time was similar between a prefibrillar intermedaite state and the fibril state.

Report

(3 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • Research Products

    (19 results)

All 2018 2017 2016

All Journal Article (4 results) (of which Peer Reviewed: 4 results,  Open Access: 1 results) Presentation (15 results) (of which Int'l Joint Research: 6 results,  Invited: 6 results)

  • [Journal Article] Effect of temperature and hydration level on purple membrane dynamics studied using broadband dielectric spectroscopy from sub-GHz to THz regions2018

    • Author(s)
      Naoki Yamamoto, Shota Ito, Masahiro Nakanishi, Eri Chatani, Keiichi Inoue, Hideki Kandori, Keisuke Tominaga
    • Journal Title

      J. Phys. Chem. B

      Volume: 122 Issue: 4 Pages: 1367-1377

    • DOI

      10.1021/acs.jpcb.7b10077

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A specific form of prefibrillar aggregates that functions as a precursor of amyloid nucleation2018

    • Author(s)
      Naoki Yamamoto, Shoko Tsuhara, Atsuo Tamura, Eri Chatani
    • Journal Title

      Sci. Rep.

      Volume: 8 Issue: 1 Pages: 62-62

    • DOI

      10.1038/s41598-017-18390-y

    • NAID

      120006394632

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Recent progress on understanding the mechanisms of amyloid nucleation2018

    • Author(s)
      Eri Chatani, Naoki Yamamoto
    • Journal Title

      Biophys. Rev.

      Volume: 10 Issue: 2 Pages: 527-534

    • DOI

      10.1007/s12551-017-0353-8

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Broadband Dielectric Spectroscopy on Lysozyme in the sub-Gigahertz to Terahertz Frequency Regions: Effects of Hydration and Thermal Excitation2016

    • Author(s)
      Naoki Yamamoto, Kaoru Ohta, Atsuo Tamura,  Keisuke Tominaga
    • Journal Title

      J. Phys. Chem. B

      Volume: 120 Issue: 21 Pages: 4743-4755

    • DOI

      10.1021/acs.jpcb.6b01491

    • Related Report
      2016 Research-status Report
    • Peer Reviewed
  • [Presentation] Characterization and Stabilization of Prefibrillar Aggregate of Insulin B Chain for Inhibition of Amyloid Fibril Formation2018

    • Author(s)
      Naoki Yamamoto, Taiki Akai, Shoko Tsuhara, Atsuo Tamura, Rintaro Inoue, Masaaki Sugiyama, Eri Chatani
    • Organizer
      新学術領域研究「動的秩序と機能」第6回国際シンポジウム
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Temperature and Hydration Dependence of Protein Dynamics Studied by Broadband Dielectric Spectroscopy2018

    • Author(s)
      Naoki Yamamoto
    • Organizer
      FIR center seminar, Fukui University
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] タンパク質の広帯域誘電分光;水和水ダイナミクスおよびその熱活性の検証2018

    • Author(s)
      山本直樹
    • Organizer
      第18回日本蛋白質科学会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Protein hydration and its thermal excitation studied by broadband dielectric spectroscopy2017

    • Author(s)
      Naoki Yamamoto, Shota Ito, Eri Chatani, Hideki Kandori, Keisuke Tominaga
    • Organizer
      The 1st Philippine-Japan Terahertz Research Workshop
    • Place of Presentation
      De La sale University Science and Technology Complex, the Philippines
    • Year and Date
      2017-02-20
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Induction of the amyloid fibril formation by an ultrasonic wave on the prefibrillar intermediate of insulin B chain2017

    • Author(s)
      Naoki Yamamoto, Shoko Tsuhara, Atsuo Tamura, Eri Chatani
    • Organizer
      The 17th Annual Meeting of the Protein Science Society of Japan
    • Related Report
      2017 Annual Research Report
  • [Presentation] Characterization of prefibillar intermediates that function as a precursorof the amyloid fibrils2017

    • Author(s)
      Naoki Yamamoto, Shoko Tsuhara, Atsuo Tamura, Eri Chatani
    • Organizer
      The 14th Horizons in Molecular Biology Symposium 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Characterization of Prefibrillar Aggregates that Function as a Precursor of Amyloid Nucleation2017

    • Author(s)
      Naoki Yamamoto, Shoko Tsuhara, Atsuo Tamura, Eri Chatani
    • Organizer
      The 55th Annual Meeting of the Biophysical Society of Japan
    • Related Report
      2017 Annual Research Report
  • [Presentation] Protein hydration dynamics studied by broadband dielectric spectroscopy2016

    • Author(s)
      Naoki Yamamoto, Shota Ito, Kaoru Ohta, Atsuo Tamura, Eri Chatani, Hideki Kandori, Keisuke Tominaga
    • Organizer
      Japan-Taiwan Medical Spectroscopy International Symposium
    • Place of Presentation
      Awaji Yumebutai International Conference Center
    • Year and Date
      2016-12-04
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Effects of hydration on protein dynamics and its thermal excitation studied by broadband dielectric spectroscopy2016

    • Author(s)
      Naoki Yamamoto, Shota Ito, Eri Chatani, Hideki Kandori, Keisuke Tominaga
    • Organizer
      2nd International Aquaphotomics Symposium
    • Place of Presentation
      Kobe University
    • Year and Date
      2016-11-26
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Effects of hydration and thermal excitation of globular and membrane proteins studied by broadband dielectric spectroscopy2016

    • Author(s)
      山本直樹、伊藤奨太、茶谷絵理、神取秀樹、富永圭介
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      筑波国際会議場
    • Year and Date
      2016-11-25
    • Related Report
      2016 Research-status Report
  • [Presentation] Hydration and thermal-excitation effects of purple membrane dynamics probed by broadband dielectric spectroscopy2016

    • Author(s)
      Naoki Yamamoto, Shota Ito, Eri Chatani, Hideki Kandori, Keisuke Tominaga
    • Organizer
      Indo-Japan Discussion Meeting on Frontiers in Molecular Spectroscopy: From Fundamental to Applications on material science and biology
    • Place of Presentation
      Indian Institute of Technology Kanpur, India
    • Year and Date
      2016-11-13
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 広帯域誘電分光で観るタンパク質ダイナミクスの水和および熱励起効果2016

    • Author(s)
      山本直樹
    • Organizer
      テラヘルツテクノロジーフォーラム 平成28年度 第1回技術セミナー
    • Place of Presentation
      ホテル北野プラザ六甲荘
    • Year and Date
      2016-10-26
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] 広帯域誘電武功を用いた紫膜ダイナミクスの観測;サブGHz-THz領域における水和および温度依存性の評価2016

    • Author(s)
      山本直樹、伊藤奨太、茶谷絵理、神取秀樹、富永圭介
    • Organizer
      第10回分子科学討論会
    • Place of Presentation
      神戸ファッションマート
    • Year and Date
      2016-09-13
    • Related Report
      2016 Research-status Report
  • [Presentation] THz分光および広帯域誘電分光による水和タンパク質ダイナミクスの観測2016

    • Author(s)
      山本直樹
    • Organizer
      Spring-8シンポジウム 放射光赤外研究会サテライトミーティング 「振動分光でわかること:赤外分光の今後と方向性」
    • Place of Presentation
      関西学院大学神戸三田キャンパス
    • Year and Date
      2016-08-20
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] 広帯域誘電分光を用いた紫膜のダイナミクスにおける温度および水和依存性の観測2016

    • Author(s)
      山本直樹、伊藤奨太、茶谷絵理、神取秀樹、富永圭介
    • Organizer
      第43回生体分子科学討論会
    • Place of Presentation
      名古屋大学
    • Year and Date
      2016-06-24
    • Related Report
      2016 Research-status Report

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Published: 2016-04-21   Modified: 2019-03-29  

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