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Photodissociation mechanism of heme protein studied by ultrafast spectroscopy

Research Project

Project/Area Number 16K17784
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Biological physics/Chemical physics/Soft matter physics
Research InstitutionKanagawa University

Principal Investigator

Yabushita Atsushi  神奈川大学, 付置研究所, 客員教授 (20376536)

Research Collaborator Iwakura Izumi  神奈川大学
Chen Pei-Feng  Academia Sinica
Lo Hsin-Pin  National Chiao-Tung University
Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2018: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2017: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2016: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords超高速分光 / フェムト秒レーザー / ヘム蛋白 / 光反応 / 光物性
Outline of Final Research Achievements

Heme protein plays important roles in vivo; hemoglobin transports oxygen obtained by respiration to produce energy at each part inside of the body, and nitric oxide (NO) generated by NO synthase (NOS) controls blood flow, neurotransmission, and immunity. The primary processes of these functions are triggered by ultrafast dissociation of diatomic molecules from those heme proteins. Despite the importance of the primary process, its detail mechanism is still not been elucidated.
In this project, I have developed my own ultrashort pulse laser system to study the ultrafast primary process, and applying the ultrashort pulse laser, I have elucidated the initial reaction mechanism of NOS.

Academic Significance and Societal Importance of the Research Achievements

ヘムたんぱく質は生体内で重要な機能を持っており、ヘモグロビンは呼吸で得た酸素を体内に輸送しエネルギーを与え、一酸化窒素合成酵素(NOS)から発生する一酸化窒素(NO)は血流、神経伝達、免疫をコントロールする。これらの機能のトリガーとなる初期過程は分子のヘムたんぱく質からの超高速乖離であり、本研究課題では超短パルスレーザー光源を開発することにより、NOSをはじめ様々な物質の超高速反応メカニズムを明らかにした。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (36 results)

All 2019 2018 2017 2016 Other

All Int'l Joint Research (5 results) Journal Article (10 results) (of which Int'l Joint Research: 10 results,  Peer Reviewed: 10 results,  Acknowledgement Compliant: 1 results) Presentation (21 results) (of which Int'l Joint Research: 7 results,  Invited: 6 results)

  • [Int'l Joint Research] National Taiwan University/Academia Sinica, Taiwan/National Chiao-Tung University, Taiwan(その他の国・地域(台湾))

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] Bulgarian Academy of Sciences(ブルガリア)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] Can Tho Univ. of Medicine and Pharmacy(ベトナム)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] Academia Sinica/National Taiwan University/National Cheng Kung University(Taiwan)

    • Related Report
      2017 Research-status Report
  • [Int'l Joint Research] National Taiwan University/Academia Sinica/National Chiao-Tung University(Taiwan)

    • Related Report
      2016 Research-status Report
  • [Journal Article] Ultrafast dynamics of coherent optical phonon in a thin film of Bi3Se2Te2018

    • Author(s)
      Ying-Kuan Ko, Yan-Hao Huang, Phuoc Huu Le, Chih-Wei Luo, Marin Mirtchev Gospodinov, Takayoshi Kobayashi, Atsushi Yabushita
    • Journal Title

      Chemical Physics

      Volume: 512 Pages: 62-67

    • DOI

      10.1016/j.chemphys.2018.03.034

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Direct observation of the change in transient molecular structure of 9,9'-bianthryl using a 10 fs pulse UV laser2018

    • Author(s)
      Sena Hashimoto, Atsushi Yabushita, Takayoshi Kobayashi, Kotaro Okamura, Izumi Iwakura
    • Journal Title

      Chemical Physics

      Volume: 512 Pages: 128-134

    • DOI

      10.1016/j.chemphys.2017.12.016

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Experimental verification of multidimensional quantum steering2018

    • Author(s)
      Li Che-Ming、Lo Hsin-Pin、Chen Liang-Yu、Yabushita Atsushi
    • Journal Title

      Optics Communications

      Volume: 410 Pages: 956-960

    • DOI

      10.1016/j.optcom.2017.11.070

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Transient process spectroscopy for the direct observation of inter-molecular photo-dissociation2017

    • Author(s)
      Hashimoto Sena、Yabushita Atsushi、Iwakura Izumi
    • Journal Title

      Structural Dynamics

      Volume: 4 Issue: 5 Pages: 054901-054901

    • DOI

      10.1063/1.4983639

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Ultrafast relaxation dynamics of nitric oxide synthase studied by visible broadband transient absorption spectroscopy2017

    • Author(s)
      Hung Chih-Chang、Yabushita Atsushi、Kobayashi Takayoshi、Chen Pei-Feng、Liang Keng S.
    • Journal Title

      Chemical Physics Letters

      Volume: 683 Pages: 619-624

    • DOI

      10.1016/j.cplett.2017.04.081

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Real-time observation of interfragment vibration and charge transfer within the TCNQF 4 dimer2017

    • Author(s)
      Hashimoto Sena、Yabushita Atsushi、Iwakura Izumi
    • Journal Title

      Chemical Physics

      Volume: 493 Pages: 56-60

    • DOI

      10.1016/j.chemphys.2017.06.003

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Schiff Base Proton Acceptor Assists Photoisomerization of Retinal Chromophores in Bacteriorhodopsin2017

    • Author(s)
      Hung Chih-Chang、Chen Xiao-Ru、Ko Ying-Kuan、Kobayashi Takayoshi、Yang Chii-Shen、Yabushita Atsushi
    • Journal Title

      Biophysical Journal

      Volume: 112 Issue: 12 Pages: 2503-2519

    • DOI

      10.1016/j.bpj.2017.05.015

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Ultrafast dynamics of ligand and substrate interaction in endothelial nitric oxide synthase under Soret excitation2016

    • Author(s)
      Chih-Chang Hung, Atsushi Yabushita, Takayoshi Kobayashi, Pei-Feng Chen, Keng S. Liang
    • Journal Title

      Biophysical Chemistry

      Volume: 214 Pages: 11-16

    • DOI

      10.1016/j.bpc.2016.05.001

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Real-time measurements of ultrafast electronic dynamics in the disproportionation of [TCNQ](2-)(2) using a visible sub-10 fs pulse laser2016

    • Author(s)
      Sena Hashimoto, Atsushi Yabushita, Takayoshi Kobayashi, Izumi Iwakura
    • Journal Title

      Chemical Physics Letters

      Volume: 650 Pages: 47-51

    • DOI

      10.1016/j.cplett.2016.02.053

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Ultrafast dynamics of uracil and thymine studied using a sub-10 fs deep ultraviolet laser2016

    • Author(s)
      Ultrafast dynamics of uracil and thymine studied using a sub-10 fs deep ultraviolet laser
    • Journal Title

      Physical Chemistry Chemical Physics

      Volume: 18 Issue: 25 Pages: 17044-17053

    • DOI

      10.1039/c5cp07861j

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] Ultrafast dynamics of oxy-hemeglobin measured by UV short pulse laser2019

    • Author(s)
      Ying Kuan Ko, Takayoshi Kobayashi, Atsushi Yabushita
    • Organizer
      10th Asian Photochemistry Conference
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Primary reaction in proteins observed by ultrashort pulse lasers2019

    • Author(s)
      Atsushi Yabushita
    • Organizer
      Winter School on Free Electron Lasers 2019
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Ultrafast pump-probe on protein dynamics2018

    • Author(s)
      Atsushi Yabushita
    • Organizer
      Introduction of Synchrotron and Laser Techniques in Biomedical Research
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Ultrafast spectroscopy of bacteriorhodopsin studied by ultrashort visible pulse laser2018

    • Author(s)
      Atsushi Yabushita, Ying-Kuan. Ko, Nai-Hong Yo, Takayoshi Kobayashi, ChihShen Yang
    • Organizer
      73rd Annual Meeting (2018), The Physical Society of Japan
    • Related Report
      2017 Research-status Report
  • [Presentation] Primary reaction in proteins observed by ultrashort pulse lasers2018

    • Author(s)
      Atsushi Yabushita
    • Organizer
      Winter School on Free Electron Laser 2018
    • Related Report
      2017 Research-status Report
    • Invited
  • [Presentation] Ultrafast spectroscopy of nitric oxide synthase probed by broad-band visible femtosecond laser pulse2017

    • Author(s)
      Atsushi Yabushita, Chih-Chang Hung, Takayoshi Kobayashi, Pei-Feng Chen, Kent S. Liang
    • Organizer
      72nd Annual Meeting of Physical Society of Japan
    • Place of Presentation
      Osaka University, Osaka, Japan
    • Year and Date
      2017-03-17
    • Related Report
      2016 Research-status Report
  • [Presentation] Rapid-Scanning Pump-probe Spectroscopy system synchronized with 10-kHz repetition rate of Femtosecond Laser2017

    • Author(s)
      S. Kato, A. Yabushita, K. Misawa
    • Organizer
      レーザー学会 第37回年次大会
    • Place of Presentation
      Tokushima University, Tokushima, Japan
    • Year and Date
      2017-01-07
    • Related Report
      2016 Research-status Report
  • [Presentation] Photo-reaction in bimolecule aggregate visualized by real-time transition state spectroscopy2017

    • Author(s)
      S. Hashimoto, A. Yabushita, T. Kobayashi, I. Iwakura
    • Organizer
      Femtochemistry 13
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] Entangle polarization of whole photon pairs generated in beam shape and in doughnuts shape2017

    • Author(s)
      Atsushi Yabushita
    • Organizer
      Workshop on Quantum Science and Technology (QST)
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Expression of pharaonis phoborhodopsin in Eschericha coli and mesurements of fluorescence excitation and nanosecond time-resolved difference absorption spectra2016

    • Author(s)
      H. Mukawa, Y. Obara, Y. Hukutani , S. Hashimoto, I. Iwakura, A. Yabushita, M. Yohda and K. Misawa
    • Organizer
      第27回光物性研究会
    • Place of Presentation
      Kobe Univeristy, Japan
    • Year and Date
      2016-12-02
    • Related Report
      2016 Research-status Report
  • [Presentation] ジアニオン生成過程に対する電子吸引基の効果2016

    • Author(s)
      Sena Hashimoto, Atsushi Yabushita, Izumi Iwakura
    • Organizer
      第72回有機合成化学協会関東支部シンポジウム(新潟シンポジウム)
    • Place of Presentation
      Niigata University of Pharmacy and Applied Life Science, Niigata, Japan
    • Year and Date
      2016-11-26
    • Related Report
      2016 Research-status Report
  • [Presentation] 超高速二次元相関分光法によるバクテリオロドプシンのプロトンポンプ機構解明2016

    • Author(s)
      Atsushi Yabushita, Chii-Shen Yang, Takayoshi Kobayashi
    • Organizer
      第72回有機合成化学協会関東支部シンポジウム(新潟シンポジウム)
    • Place of Presentation
      Niigata University of Pharmacy and Applied Life Science, Niigata, Japan
    • Year and Date
      2016-11-26
    • Related Report
      2016 Research-status Report
  • [Presentation] Ultrafast dynamics of nitric oxide synthase studied by two dimensional correlation spectroscopy2016

    • Author(s)
      Atsushi Yabushita, Chih-Chang Hung, Takayoshi Kobayashi, Pei-Feng Chen, and Keng S. Liang
    • Organizer
      Stereodynamics 2016
    • Place of Presentation
      Academia Sinica, Taipei, Taiwan
    • Year and Date
      2016-11-06
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Intermolecular Disproportionation between Two Radical Anions Visualized by Real-Time Transition State Spectroscopy2016

    • Author(s)
      Sena Hashimoto, Atsushi Yabushita, Izumi Iwakura
    • Organizer
      Stereodynamics 2016
    • Place of Presentation
      Academia Sinica, Taipei, Taiwan
    • Year and Date
      2016-11-06
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Ultrafast dynamics of proton pump sub-channels in bacteriorhodopsin2016

    • Author(s)
      Atsushi Yabushita, Chih-Chang Hung, Ying-Kuan Ko, Chii-Shen Yang, Takayoshi Kobayashi
    • Organizer
      Annual Meeting on Photochemistry 2016
    • Place of Presentation
      The University of Tokyo, Tokyo, Japan
    • Year and Date
      2016-09-06
    • Related Report
      2016 Research-status Report
  • [Presentation] Femtosecond time-resolved spectroscopy of bacteriorhodopsin from haloquadratum walsbyi2016

    • Author(s)
      Chih-Chang Hung, Takayoshi Kobayashi, Chii-Shen Yang, Atsushi Yabushita
    • Organizer
      The 21st Biophysics Conference
    • Place of Presentation
      National Tsing-Hua University, Taiwan
    • Year and Date
      2016-05-18
    • Related Report
      2016 Research-status Report
  • [Presentation] Ultrafast dynamics of oxygenase domain of endothelial nitric oxide synthase2016

    • Author(s)
      Atsushi Yabushita, Chih-Chang Hung, Takayoshi Kobayashi, Pei-Feng Chen, Keng S. Liang
    • Organizer
      The 21st Biophysics Conference
    • Place of Presentation
      National Tsing-Hua University, Taiwan
    • Year and Date
      2016-05-18
    • Related Report
      2016 Research-status Report
  • [Presentation] Ultrafast spectroscopy of oxygenase domain of endothelial nitric oxide synthase2016

    • Author(s)
      Atsushi Yabushita
    • Organizer
      XXVI-th IUPAC Symposium on Photochemistry (2016 IUPAC Photochem)
    • Place of Presentation
      Osaka City Central Public Hall, Osaka, Japan
    • Year and Date
      2016-04-03
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Two-dimensional correlation spectroscopy for observation of ultrafast dynamics of bacteriorhodopsin from haloquadratum walsybi2016

    • Author(s)
      Takayoshi Kobayashi, Chii-Shen Yang, Atsushi Yabushita
    • Organizer
      XXVI-th IUPAC Symposium on Photochemistry (2016 IUPAC Photochem)
    • Place of Presentation
      Osaka City Central Public Hall, Osaka, Japan
    • Year and Date
      2016-04-03
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Generation of polarization entangled photon pairs in shape of beam and doughnuts2016

    • Author(s)
      Atsushi Yabushita
    • Organizer
      AMO (atomic, molecular, and optical physics) seminar
    • Place of Presentation
      National Tsing-Hua University, Taiwan
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] Femtosecond Laser Pulse for Ultrafast Spectral Snapshots of Chemical Reactions2016

    • Author(s)
      Atsushi Yabushita
    • Organizer
      Institute of Global Innovation Research (GIR) Open Seminar
    • Place of Presentation
      Tokyo University of Agriculture and Technology, Tokyo, Japan
    • Related Report
      2016 Research-status Report
    • Invited

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Published: 2016-04-21   Modified: 2022-08-19  

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