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Activity inhibition mechanism of [NiFe] hydrogenase by oxidative modification of active site cysteine ligand

Research Project

Project/Area Number 16K17936
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Bio-related chemistry
Research InstitutionNara Institute of Science and Technology

Principal Investigator

Tai Hulin  奈良先端科学技術大学院大学, 物質創成科学研究科, 特任助教 (40512554)

Research Collaborator HIROTA Shun  奈良先端科学技術大学院大学, 物質創成科学研究科, 教授
HIGUCHI Yoshiki  兵庫県立大学, 生命理学研究科, 教授 (90183574)
XU Liyang  
Project Period (FY) 2016-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2017: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2016: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywords金属蛋白質 / Ni酵素 / ヒドロゲナーゼ / 酸塩基平衡 / 光活性化 / 水素 / FT-IR / 生体関連化学 / タンパク質・酵素化学
Outline of Final Research Achievements

[NiFe] hydrogenase catalyzes the interconversion of dihydrogen to two protons and two electrons. The acid-base equilibrium between the ready Ni-SIr and active Ni-SIa states is a common feature among [NiFe] hydrogenases, but its mechanism remains unrevealed. We have shown that the Ni-SIr state was photo-activated to its Ni-SIa state by Ar+ laser irradiation at 514.5 nm, whereas the Ni-SL state was light induced from a newly identified state, which was less active than any other identified state and existed in the “as-isolated” enzyme. Large activation energy and kinetic isotope effect were obtained for the reconversion of the Ni-SIa state to Ni-SIr state after the Ni-SIr-to-Ni-SIa photoactivation, suggesting that the Ni-SIa state reacts with H2O and leaves a bridging hydroxo ligand for the Ni-SIr state. These results provide new insights into the acid-base equilibrium of [NiFe] hydrogenase.

Report

(3 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • Research Products

    (19 results)

All 2018 2017 2016 Other

All Journal Article (4 results) (of which Peer Reviewed: 4 results,  Acknowledgement Compliant: 1 results) Presentation (14 results) (of which Int'l Joint Research: 3 results,  Invited: 1 results) Remarks (1 results)

  • [Journal Article] Comprehensive Reaction Mechanisms at and nearby the Ni-Fe Active Sites of [NiFe] Hydrogenases2018

    • Author(s)
      Hulin Tai, Yoshiki Higuchi, and Shun Hirota
    • Journal Title

      Dalton Transactions

      Volume: 47 Issue: 13 Pages: 4408-4423

    • DOI

      10.1039/c7dt04910b

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Equilibrium between Inactive Ready Ni-SIr and Active Ni-SIa States of [NiFe] Hydrogenase Studied by Utilizing Ni-SIr-to-Ni-SIa Photoactivation2017

    • Author(s)
      Hulin Tai, Liang Xu, Koji Nishikawa, Yoshiki Higuchi, and Shun Hirota
    • Journal Title

      Chemical Communications

      Volume: 53 Issue: 75 Pages: 10444-10447

    • DOI

      10.1039/c7cc06061k

    • NAID

      120006726653

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural basis of the redox switches in the NAD+-reducing soluble [NiFe]-hydrogenase2017

    • Author(s)
      Y. Shomura, M, Taketa, H. Nakashima, H. Tai, H. Nakagawa, Y. Ikeda, Y, M. Ishii, Y. Igarashi, H. Nishihara, K.-S. Yoon, S. Ogo, Y. Higuchi
    • Journal Title

      Science

      Volume: 537 Issue: 6354 Pages: 928-932

    • DOI

      10.1126/science.aan4497

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Photoactivation of the Ni-SIr State to Ni-SIa State in [NiFe] Hydrogenase: FT-IR Study on the Light Reactivity of the Ready Ni-SIr State and As-isolated Enzyme Revisited2016

    • Author(s)
      H. Tai, L. Xu, S. Inoue, K. Nishikawa, Y. Higuchi, and S. Hirota
    • Journal Title

      Physical Chemistry Chemical Physics

      Volume: 18 Issue: 32 Pages: 22025-22030

    • DOI

      10.1039/c6cp04628b

    • NAID

      120006334943

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] [NiFe]ヒドロゲナーゼの不活性状態Ni-SIrと活性状態Ni-SIa間の活性化・不活性化機構の解明2018

    • Author(s)
      太 虎林,許 力揚,西川幸志,樋口芳樹,廣田俊
    • Organizer
      日本化学会第98春季年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 光照射を利用した[NiFe]ヒドロゲナーゼの活性化機構のFT-IR研究2017

    • Author(s)
      太虎林,許力揚,西川幸志,樋口芳樹,廣田俊
    • Organizer
      日本化学会第97春季年会(2017)
    • Place of Presentation
      慶應義塾大学日吉キャンパス(神奈川県横浜市)
    • Year and Date
      2017-03-16
    • Related Report
      2016 Research-status Report
  • [Presentation] 放線菌由来チロシナーゼの活性化機構2017

    • Author(s)
      村木美水,木原章吾,坂東尚彦,吉津裕成,黒田照夫,坂口美幸,萱間紅絵,太 虎林,廣田俊,小倉尚志,杉山政則,的場康幸
    • Organizer
      第27回金属の関与する生体関連反応シンポジウム
    • Related Report
      2017 Annual Research Report
  • [Presentation] [NiFe]ヒドロゲナーゼの活性準備状態Ni-SIrと活性状態Ni-SIa間の酸塩基平衡機構の光照射を利用した研究2017

    • Author(s)
      太 虎林,許力揚,西川幸志,樋口芳樹,廣田 俊
    • Organizer
      第17回日本蛋白質科学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 硫酸還元菌由来[NiFe]ヒドロゲナーゼの活性準備状態Ni-SIrと活性状態Ni-SIa間の酸塩基平衡機構のFT-IR研究2017

    • Author(s)
      太 虎林,許 力揚,西川幸志,樋口芳樹,廣田 俊
    • Organizer
      第44回生体分子科学討論会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 放線菌由来チロシナーゼの成熟化機構2017

    • Author(s)
      的場康幸,木原章吾,村木美水,坂東尚彦,黒田照夫,太 虎林,廣田俊,坂口美幸,小倉尚志,杉山政則
    • Organizer
      第11回バイオ関連化学シンポジウム
    • Related Report
      2017 Annual Research Report
  • [Presentation] Elucidation of the acid-base equilibrium mechanism between the ready Ni-SIr and active Ni-SIa states of [NiFe] hydrogenase utilizing light irradiation2017

    • Author(s)
      Hulin Tai, Liyang Xu, Koji Nishikawa, Yoshiki Higuchi, and Shun Hirota
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Elucidation of the activation/inactivation mechanism between the Ni-SIr and Ni-SIa states of [NiFe] hydrogenase utilizing Ni-SIr-to-Ni-SIa photoactivation2017

    • Author(s)
      Hulin Tai, Liyang Xu, Koji Nishikawa, Yoshiki Higuchi, and Shun Hirota
    • Organizer
      2nd International Symposium on Biofunctional Chemistry (ISBC2017)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] S-77ヒドロゲナーゼ酸素耐性機構の構造化学2017

    • Author(s)
      松浦滉明,西川幸志,太 虎林,Noor Dina Muhd Noor,金在炫,姜志玲,尹基石,小江誠司,舘野賢,廣田俊,樋口芳樹
    • Organizer
      平成29年度日本結晶学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 光照射を利用した硫酸還元菌由来[NiFe]ヒドロゲナーゼの活性化機構のFT-IR研究2016

    • Author(s)
      太虎林、許力揚、井上誠也、西川幸志、樋口芳樹、廣田俊
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場(茨城県つくば市)
    • Year and Date
      2016-11-25
    • Related Report
      2016 Research-status Report
  • [Presentation] [NiFe]ヒドロゲナーゼにおけるNi-SIr状態からNi-SIa状態への光活性化2016

    • Author(s)
      許力揚、太虎林、井上誠也、西川幸志、樋口芳樹、廣田俊
    • Organizer
      第10回バイオ関連化学シンポジウム
    • Place of Presentation
      石川県立音楽堂(石川県金沢市)
    • Year and Date
      2016-09-07
    • Related Report
      2016 Research-status Report
  • [Presentation] Structural and biochemical studies of Hyd-2 type [NiFe]-hydrogenase from Citrobacter sp. S-77 - proposal of the general mechanism of O2-tolerance of [NiFe]-hydrogenases2016

    • Author(s)
      Y. Higuchi, N. D. M. Noor, H. Matsuura, K. Nishikawa, H. Nishihara, K-S.Yoon, S. Ogo, H. Tai, S. Hirota, and Y. Shomura
    • Organizer
      11th International Hydrogenase Conference (Hydrogenase 2016)
    • Place of Presentation
      Marseille, France
    • Year and Date
      2016-07-13
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Characterization of the light-induced Ni-L states of [NiFe] Hydrogenase from Desulfovibrio vulgaris Miyazaki F2016

    • Author(s)
      S. Hirota, H. Tai, K. Nishikawa, S. Inoue, and Y. Higuchi
    • Organizer
      11th International Hydrogenase Conference (Hydrogenase 2016)
    • Place of Presentation
      Marseille, France
    • Year and Date
      2016-07-11
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] FT-IRとEPRを用いた[NiFe]ヒドロゲナーゼの新規中間体の特定と鉄硫黄クラスターによる反応制御機構の解明2016

    • Author(s)
      太虎林、西川幸志、井上誠也、樋口芳樹、廣田俊
    • Organizer
      第16回日本蛋白質科学会年会
    • Place of Presentation
      福岡国際会議場(福岡県福岡市)
    • Year and Date
      2016-06-07
    • Related Report
      2016 Research-status Report
  • [Remarks] 超分子集合体科学研究室

    • URL

      http://mswebs.naist.jp/LABs/hirota/index.html

    • Related Report
      2016 Research-status Report

URL: 

Published: 2016-04-21   Modified: 2019-03-29  

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