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Comparative genomic and population genomic analyses of disease regions

Research Project

Project/Area Number 16K18470
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Genome biology
Research InstitutionInstitute of Physical and Chemical Research (2018)
Kazusa DNA Research Institute (2017)
The Graduate University for Advanced Studies (2016)

Principal Investigator

FAWCETT JEFFREY  国立研究開発法人理化学研究所, 数理創造プログラム, 上級研究員 (50727394)

Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2018: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2017: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2016: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Keywords集団ゲノム解析 / 遺伝的多様性 / ゲノム / 進化
Outline of Final Research Achievements

Understanding how the variation at the genetic level is related to the variation at the phenotypic level is one of the most fundamental goals in biology. Here, we obtained the genome-wide SNP (single-nucleotide polymorphism) data of several hundred horses and performed various population genomic analyses. We identified several regions likely to have been targeted by artificial selection during the domestication process of horses. We also found that the genome of modern Thoroughbred horses has a much higher level of homozygosity due to inbreeding due to the past selective breeding processes of horses. In addition, we proposed an evolutionary model to explain how repetitive sequences contribute to the rewiring of complex regulatory networks during evolution

Academic Significance and Societal Importance of the Research Achievements

生物の遺伝的多様性がどんなプロセスで形成されているかを知ることは生物学における重要な問いである。本研究では選抜交配と近親交配が継続的に行われている中で遺伝的多様性やゲノムの組成がどう変化していくか、さらにそういった条件下の生物種においてどのようにして有用な形質と関連しているゲノム領域を同定すればいいのかについて、重要な知見を得ることができた。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (5 results)

All 2018 2017 2016

All Journal Article (1 results) (of which Peer Reviewed: 1 results) Presentation (4 results)

  • [Journal Article] Evaluating the potential roles of the <i>Gray</i> and <i>Extension</i> loci in the coat coloration of Thoroughbred racing horses2017

    • Author(s)
      Takahiro Sakamoto, Jeffrey A Fawcett, Hideki Innan
    • Journal Title

      Journal of Equine Science

      Volume: 28 Issue: 2 Pages: 61-65

    • DOI

      10.1294/jes.28.61

    • NAID

      130006792862

    • ISSN
      1340-3516, 1347-7501
    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Presentation] 日本のサラブレッド集団を含むウマ20品種のゲノム比較解析2018

    • Author(s)
      Jeffrey Fawcett, 坂本貴洋、岩嵜航、戸崎晃明、佐藤文夫、印南秀樹
    • Organizer
      日本ウマ科学会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 日本のサラブレッド集団形成に関わった遺伝子の探索とその進化2018

    • Author(s)
      坂本貴洋、Jeffrey Fawcett, 岩嵜航、戸崎晃明、佐藤文夫、印南秀樹
    • Organizer
      日本ウマ科学会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 全ゲノムSNP解析によるサラブレッドのゲノム比較2017

    • Author(s)
      Jeffrey Fawcett, 佐藤文夫、岩嵜航、戸崎晃明、印南秀樹
    • Organizer
      日本ウマ科学界
    • Related Report
      2017 Research-status Report
  • [Presentation] サラブレッドの全ゲノムSNP解析:応用と今後2016

    • Author(s)
      Jeffrey Fawcett, 戸崎晃明、佐藤文夫、印南秀樹
    • Organizer
      日本ウマ科学会
    • Place of Presentation
      東京
    • Year and Date
      2016-11-28
    • Related Report
      2016 Research-status Report

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Published: 2016-04-21   Modified: 2020-03-30  

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