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Uncovering a dynamic life of microRNA in the unicellular green alga Chlamydomonas reinhardtii

Research Project

Project/Area Number 16K18480
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field System genome science
Research InstitutionKochi University (2017-2018)
National Institute for Basic Biology (2016)

Principal Investigator

Yamasaki Tomohito  高知大学, 教育研究部自然科学系理工学部門, 助教 (70512060)

Research Collaborator Cerutti Heriberto  
Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2018: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2017: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2016: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
KeywordsマイクロRNA / クラミドモナス / mRNA-seq / sRNA-seq / RIP-seq / RNA silencing / 発現制御 / ゲノム
Outline of Final Research Achievements

In eukaryotic organisms, there are several mechanisms that regulate gene expression, among which are microRNA (miRNA)-mediated system. miRNAs are deeply involved in the control of biological processes such as development and differentiation, and are also involved in cancer etc. While these miRNAs have been well studied in multicellular organisms, they are not well understood in unicellular organisms. Thus, we have isolated and analyzed several mutants which defective in miRNA-mediated gene regulation using the unicellular green alga Chlamydomonas reinhardtii to elucidate part of the molecular mechanisms of miRNA biogenesis and function. In addition, phenotypic analysis of the isolated mutants revealed some of the role of miRNAs in Chlamydomonas.

Academic Significance and Societal Importance of the Research Achievements

マイクロRNAは単細胞~多細胞生物の、広範囲の真核生物で見られる。しかしマイクロRNAの作られ方や役割は非常に多様である。これはそうした仕組みが動植物の共通祖先である単細胞真核生物で成立し、様々な生物への進化にあわせて進化してきたことを意味する。では、マイクロRNAの始原的な姿はどのようなものだったのか?そのヒントは単細胞生物にあるはずであるが、単細胞を使った研究は進んでいない。本研究はそうした謎の解明に寄与する学術的意義がある。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (14 results)

All 2019 2018 2017 2016 Other

All Int'l Joint Research (2 results) Journal Article (6 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 6 results,  Open Access: 4 results,  Acknowledgement Compliant: 1 results) Presentation (4 results) (of which Int'l Joint Research: 1 results) Book (1 results) Remarks (1 results)

  • [Int'l Joint Research] ネブラスカ州立大学リンカーン校(米国)

    • Related Report
      2017 Research-status Report
  • [Int'l Joint Research] ネブラスカ州立大学リンカーン校/スタンフォード大学(米国)

    • Related Report
      2016 Research-status Report
  • [Journal Article] Isolation of photoprotective signal transduction mutants by systematic bioluminescence screening in Chlamydomonas reinhardtii.2019

    • Author(s)
      Tokutsu R, Fujimura-Kamada K, Yamasaki T, Matsuo T, Minagawa J
    • Journal Title

      Sci Rep.

      Volume: 9(1) Issue: 1 Pages: 2820-2820

    • DOI

      10.1038/s41598-019-39785-z

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Algal photoprotection is regulated by the E3 ligase CUL4?DDB1DET12018

    • Author(s)
      Aihara Yusuke、Fujimura-Kamada Konomi、Yamasaki Tomohito、Minagawa Jun
    • Journal Title

      Nature Plants

      Volume: 5 Issue: 1 Pages: 34-40

    • DOI

      10.1038/s41477-018-0332-5

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] miRNAs in the alga Chlamydomonas reinhardtii are not phylogenetically conserved and play a limited role in responses to nutrient deprivation2017

    • Author(s)
      Voshall Adam、Kim Eun-Jeong、Ma Xinrong、Yamasaki Tomohito、Moriyama Etsuko N.、Cerutti Heriberto
    • Journal Title

      Scientific Reports

      Volume: 7 Issue: 1 Pages: 5462-5462

    • DOI

      10.1038/s41598-017-05561-0

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Cooperative processing of primary miRNAs by DUS16 and DCL3 in the unicellular green alga Chlamydomonas reinhardtii2017

    • Author(s)
      Tomohito Yamasaki & Heriberto Cerutti
    • Journal Title

      Communicative & Integrative Biology

      Volume: 10 Issue: 1 Pages: e1280208-e1280208

    • DOI

      10.1080/19420889.2017.1280208

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] UV-mediated Chlamydomonas mutants with enhanced nuclear transgene expression by disruption of DNA methylationdependent and independent silencing systems2016

    • Author(s)
      Sari Dewi Kurniasih, Tomohito Yamasaki, Fantao Kong, Sigeru Okada, Dwiyantari Widyaningrum, Takeshi Ohama
    • Journal Title

      Plant Molecular Biology

      Volume: 92 Issue: 6 Pages: 629-641

    • DOI

      10.1007/s11103-016-0529-9

    • Related Report
      2016 Research-status Report
    • Peer Reviewed
  • [Journal Article] RNA-binding protein DUS16 plays an essential role in primary miRNA processing in the unicellular alga Chlamydomonas reinhardtii.2016

    • Author(s)
      Tomohito Yamasakia, Masayuki Onishi, Eun-Jeong Kim, Heriberto Cerutti, and Takeshi Ohamaa
    • Journal Title

      Proceedings of the National Academy of Sciences of the United States of America

      Volume: 113 Issue: 38 Pages: 10720-10725

    • DOI

      10.1073/pnas.1523230113

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] クラミドモナスにおけるマイクロRNAを介したqEクエンチングのファイン チューニング2019

    • Author(s)
      山崎朋人
    • Organizer
      第60回日本植物生理学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] miRNAを介した光防御機能の制御メカニズムの解明2018

    • Author(s)
      山崎朋人
    • Organizer
      日本植物学会第82回大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] RNA-binding protein DUS16 and DCL3 work cooperatively as component of a microprocessor complex in the pri-miRNA processing in Chlamydomonas reinhardtii2017

    • Author(s)
      山﨑朋人
    • Organizer
      第58回日本植物生理学会年会
    • Place of Presentation
      鹿児島県鹿児島市鹿児島大学郡元キャンパス
    • Year and Date
      2017-03-16
    • Related Report
      2016 Research-status Report
  • [Presentation] The RNA-binding protein DUS16 plays an essential role in primary miRNA processing in Chlamydomonas reinhardtii2016

    • Author(s)
      山﨑朋人
    • Organizer
      17th International Conference on the Cell and Molecular Biology of Chlamydomonas
    • Place of Presentation
      京都府京都市国立京都国際会館
    • Year and Date
      2016-06-26
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Book] Plant Argonaute Proteins2017

    • Author(s)
      Tomohito Yamasaki (分担執筆・20章中1章担当)
    • Total Pages
      297
    • Publisher
      Humana Press
    • ISBN
      9781493971640
    • Related Report
      2017 Research-status Report
  • [Remarks] 高知大学理工学部山﨑研究室ホームページ

    • URL

      http://science.cc.kochi-u.ac.jp/?course=4091

    • Related Report
      2018 Annual Research Report

URL: 

Published: 2016-04-21   Modified: 2022-02-21  

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