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Regulation mechanism of direction of the proton translocation in proteorhodopsin

Research Project

Project/Area Number 16K18519
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Functional biochemistry
Research InstitutionMatsuyama University

Principal Investigator

TAMOGAMI JUN  松山大学, 薬学部, 助教 (30580089)

Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2018: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2017: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2016: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Keywords生体エネルギー変換 / 微生物型ロドプシン / レチナール / フォトサイクル / プロトン移動
Outline of Final Research Achievements

The purpose of this study is to clarify the molecular mechanism of reverse of direction of the proton translocation under alkaline conditions in proteorhodopsin (PR), a light-driven proton pump from marine eubacteria. From the analysis of the photocycle and accompanying proton transfer under alkaline conditions, a parallel photocycle, during which a M-like photointermediate (Ma) is formed, was observed in addition to a photocycle at neutral pH. The photocycle via Ma at alkali pH was accompanied by the sequence and direction of the photoinduced proton transfer opposite to neutral pH. Moreover, we observed that the cytoplasmic transmembrane region in PR is already hydrophilic at the dark state through the bleach reaction by hydroxylamine.

Academic Significance and Societal Importance of the Research Achievements

本研究による結果から、微生物型ロドプシンのプロトン輸送の方向を決める機構は何かという本質的な問題を考える上での1つの役立つ情報が得られたものと考える。さらに、海洋でのエネルギー合成が主な役割であるとこれまで考えられてきたPRに別の機能も存在する可能性があるという問題も提起し、近年見つかってきている内向きプロトンポンプ型の微生物型ロドプシンの生理的な機能を考える上でも重要な情報を提供するものと考えている

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (20 results)

All 2018 2017 2016

All Journal Article (5 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 5 results,  Open Access: 3 results,  Acknowledgement Compliant: 1 results) Presentation (15 results)

  • [Journal Article] Photocycle of Sensory Rhodopsin II from Halobacterium salinarum (HsSRII): Mutation of D103 Accelerates M Decay and Changes the Decay Pathway of a 13-cis O-like2018

    • Author(s)
      Dai G, Geng X, Chaoluomeng, Tamogami J, Kikukawa T, Demura M, Kamo N, Iwasa T
    • Journal Title

      Photochemistry and Photobiology

      Volume: 94 Issue: 4 Pages: 705-714

    • DOI

      10.1111/php.12917

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Interhelical interactions between D92 and C218 in the cytoplasmic domain regulate proton uptake upon N-decay in the proton transport of Acetabularia rhodopsin II2018

    • Author(s)
      Tamogami Jun, Kikukawa Takashi, Ohkawa Keisuke, Ohsawa Noboru, Nara Toshifumi, Demura Makoto, Miyauchi Seiji, Kimura-Someya Tomomi, Shirouzu Mikako, Yokoyama Shigeyuki, Shimono Kazumi, Kamo Naoki
    • Journal Title

      Journal of Photochemistry and Photobiology B: Biology

      Volume: 183 Pages: 35-45

    • DOI

      10.1016/j.jphotobiol.2018.04.012

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Low-temperature Raman spectroscopy reveals small chromophore distortion in primary photointermediate of proteorhodopsin2018

    • Author(s)
      Fujisawa Tomotsumi、Abe Masahiro、Tamogami Jun、Kikukawa Takashi、Kamo Naoki、Unno Masashi
    • Journal Title

      FEBS Letters

      Volume: 592 Issue: 18 Pages: 3054-3061

    • DOI

      10.1002/1873-3468.13219

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Existence of two O-like intermediates in the photocycle of <i>Acetabularia</i> rhodopsin II, a light-driven proton pump from a marine alga2017

    • Author(s)
      Tamogami, J., T. Kikukawa, T. Nara, M. Demura, T. Kimura-Someya, M. Shirouzu, S. Yokoyama, S. Miyauchi, K. Shimono and N. Kamo
    • Journal Title

      Biophysics and Physicobiology

      Volume: 14 Issue: 0 Pages: 49-55

    • DOI

      10.2142/biophysico.14.0_49

    • NAID

      130005464474

    • ISSN
      2189-4779
    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Photochemical characterization of actinorhodopsin and its functional existence in the natural host2016

    • Author(s)
      Nakamura, S., Kikukawa, T., Tamogami, J., Kamiya, M., Aizawa, T., Hahn, M., Ihara, K., Kamo, N., Demura, M.
    • Journal Title

      BBA-BIOENERGETICS

      Volume: 1857 Issue: 12 Pages: 1900-1908

    • DOI

      10.1016/j.bbabio.2016.09.006

    • NAID

      120006366475

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Presentation] アセタブラリアロドプシンIIのプロトン取り込み機構に関与するD92-C218残基間の相互作用2018

    • Author(s)
      〇田母神淳、菊川峰志、大川啓介、大沢登、奈良敏文、出村誠、宮内正二、染谷友美、白水美香子、横山茂之、下野和実、加茂直樹
    • Organizer
      日本生物物理学会 第10回中国四国支部大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Cl-ポンプhalorhodopsinのH+ポンプ化への試み2018

    • Author(s)
      〇安部修平、菊川峰志、田母神淳、塚本卓、相沢智康、加茂直樹、出村誠
    • Organizer
      第45回 生体分子科学討論会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Distinctively small distortion of retinal chromophore in K intermediate of proteorhodopsin observed by low-temperature Raman spectroscopy2018

    • Author(s)
      〇Tomotsumi Fujisawa, Jun Tamogami, Takashi Kikukawa, Masashi Unno
    • Organizer
      日本生物物理学会第56回年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 高度好塩菌における走光性受容体のシグナル伝達2018

    • Author(s)
      〇松波梨佐、田母神淳、奈良敏文
    • Organizer
      第71回日本細菌学会中国・四国支部総会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 高度好塩菌における走光性受容体のシグナル伝達2018

    • Author(s)
      〇松波梨佐、田母神淳、奈良敏文
    • Organizer
      第9回 愛媛微生物学ネッワーク(NAME)フォーラム
    • Related Report
      2018 Annual Research Report
  • [Presentation] センサリーロドプシンIIのThr80, Asn105への変異導入によるフォトサイクルへの影響2018

    • Author(s)
      〇黒田鼓、田母神淳、奈良敏文
    • Organizer
      第9回 愛媛微生物学ネッワーク(NAME)フォーラム
    • Related Report
      2018 Annual Research Report
  • [Presentation] 海藻(カサノリ)由来の光駆動プロトンポンプであるアセタブラリアロドプシンIIの光反応サイクル時に形成される2つのO中間体2018

    • Author(s)
      田母神淳、菊川峰志、奈良敏文、出村誠、染谷友美、白水美香子、横山茂之、宮内正二、下野和実、加茂直樹
    • Organizer
      日本薬学会第138年会
    • Related Report
      2017 Research-status Report
  • [Presentation] アセタブラリアロドプシンIIの細胞内膜貫通領域に存在するD92およびC218残基間の相互作用の役割2017

    • Author(s)
      田母神淳、菊川峰志、大川啓介、大沢登、伊達公平、奈良敏文、出村誠、染谷友美、白水美香子、横山茂之、宮内正二、下野和実、加茂直樹
    • Organizer
      日本薬学会第137年会
    • Place of Presentation
      仙台国際センター(宮城県仙台市)
    • Year and Date
      2017-03-24
    • Related Report
      2016 Research-status Report
  • [Presentation] 緑藻由来の光駆動プロトンポンプであるアセタブラリアロドプシンIIの光化学反応サイクルにおける2つのO中間体の形成2017

    • Author(s)
      田母神淳、菊川峰志、奈良敏文、出村誠、染谷友美、白水美香子、横山茂之、宮内正二、下野和実、加茂直樹
    • Organizer
      日本生物物理学会 第9回中国四国支部大会
    • Related Report
      2017 Research-status Report
  • [Presentation] Existence of two O intermediates in the photocycle of Acetabularia rhodopsin II, a light-driven algal proton pump2017

    • Author(s)
      Jun Tamogami, Takashi Kikukawa, Toshifumi Nara, Makoto Demura, Tomomi Kimura-Someya, Mikako Shirouzu, Shigeyuki Yokoyama, Seiji Miyauchi, Kazumi Shimono, Naoki Kamo
    • Organizer
      日本生物物理学会第55回年会
    • Related Report
      2017 Research-status Report
  • [Presentation] デルタロドプシンの細胞外表面に位置する酸性アミノ酸残基の解離状態は吸収波長に影響を与えるか2017

    • Author(s)
      池尻朗乃、田母神淳、奈良敏文
    • Organizer
      第8回 愛媛微生物学ネッワーク(NAME)フォーラム
    • Related Report
      2017 Research-status Report
  • [Presentation] SRII/HtrII間のシグナル伝達の分子機構2017

    • Author(s)
      松波梨佐、田母神淳、奈良敏文
    • Organizer
      第8回 愛媛微生物学ネッワーク(NAME)フォーラム
    • Related Report
      2017 Research-status Report
  • [Presentation] Role of the interaction between D92 and C218 in the proton transfer reaction in Acetabularia rhodopsin II2016

    • Author(s)
      Jun Tamogami, Takashi Kikukawa, Keisuke Okawa, Noboru Ohsawa, Kohei Date, Toshifumi Nara, Makoto Demura, Tomomi Kimura-Someya, Mikako Shirouzu, Shigeyuki Yokoyama, Seiji Miyauchi, Kazumi Shimono, Naoki Kamo
    • Organizer
      日本生物物理学会第54回年会
    • Place of Presentation
      つくば国際会議場(茨城県つくば市)
    • Year and Date
      2016-11-25
    • Related Report
      2016 Research-status Report
  • [Presentation] Replacement of “donor” residues in the light-driven H+-pump rhodopsins2016

    • Author(s)
      Koki Nishiya, Syogo Sasaki, Jun Tamogami, Takashi Kikukawa, Tomoyasu Aizawa, Naoki Kamo, Makoto Demura
    • Organizer
      日本生物物理学会第54回年会
    • Place of Presentation
      つくば国際会議場(茨城県つくば市)
    • Year and Date
      2016-11-25
    • Related Report
      2016 Research-status Report
  • [Presentation] プロテオロドプシンのアルカリ性でのM様中間体の形成とプロトン移動の順番の逆転2016

    • Author(s)
      田母神淳、佐藤慶太郎、黒川少名、山田匠、奈良敏文、出村誠、宮内正二、菊川峰志、宗行英朗、加茂直樹
    • Organizer
      日本生物物理学会 第8回 中国四国支部大会
    • Place of Presentation
      高松テルサ(香川県高松市)
    • Year and Date
      2016-05-28
    • Related Report
      2016 Research-status Report

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Published: 2016-04-21   Modified: 2020-03-30  

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