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HS-AFM studies of molecular mechanisms of learning and memory in CaMKII oligomer

Research Project

Project/Area Number 16K18523
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Biophysics
Research InstitutionKanazawa University

Principal Investigator

Shibata Mikihiro  金沢大学, 新学術創成研究機構, 准教授 (80631027)

Project Period (FY) 2016-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2017: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2016: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywordsタンパク質 / 記憶 / プロテインキナーゼ / 走査型プローブ顕微鏡 / 原子間力顕微鏡 / 高速原子間力顕微鏡 / 神経科学 / ナノサイエンス / バイオイメージング / 生物物理 / 走査プローブ顕微鏡 / ナノバイオ
Outline of Final Research Achievements

CaMKII is enriched in neurons and plays an important role for learning and memory. Because CaMKII forms 12-mer holoenzyme that responds to the frequency of the activating signal of Ca2+, an assembly of CaMKII oligomers could be a key element of a molecular mechanism of learning and memory. However, there is no direct evidence that a formation of CaMKII oligomer relates to a memory mechanism.
HS-AFM movies of CaMKII showed solid structures and fluctuated globular structures. By using truncated CaMKII, solid and globular structures were assigned to hub and kinase domains, respectively. Interestingly, 14-mer ring structures were observed in the truncated CaMKII, while 12-mer structures were observed in full-length CaMKII. These results suggest that hub domain has a strong assemble ability, while kinase domain regulates an oligomeric structure of CaMKII. Furthermore, HS-AFM revealed that a flexibility of a linker region is important for the activation of CaMKII.

Report

(3 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • Research Products

    (33 results)

All 2018 2017 2016 Other

All Journal Article (4 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 4 results,  Open Access: 2 results) Presentation (23 results) (of which Int'l Joint Research: 4 results,  Invited: 14 results) Remarks (5 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Fast Adsorption of Soft Hydrogel Microspheres on Solid Surfaces in Aqueous Solution2017

    • Author(s)
      Matsui Shusuke、Kureha Takuma、Hiroshige Seina、Shibata Mikihiro、Uchihashi Takayuki、Suzuki Daisuke
    • Journal Title

      Angewandte Chemie International Edition (Communication)

      Volume: 56 Issue: 40 Pages: 12146-12149

    • DOI

      10.1002/anie.201705808

    • NAID

      120006377474

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Real-space and real-time dynamics of CRISPR-Cas9 visualized by high-speed atomic force microscopy2017

    • Author(s)
      Shibata Mikihiro、Nishimasu Hiroshi、Kodera Noriyuki、Hirano Seiichi、Ando Toshio、Uchihashi Takayuki、Nureki Osamu
    • Journal Title

      Nature Communications

      Volume: 8 Issue: 1 Pages: 1430-1430

    • DOI

      10.1038/s41467-017-01466-8

    • NAID

      120006374160

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] High-speed atomic force microscopy imaging of live mammalian cells2017

    • Author(s)
      Mikihiro Shibata, Hiroki Watanabe, Takayuki Uchihashi, Toshio Ando, and Ryohei Yasuda
    • Journal Title

      Biophysics and Physicobiology

      Volume: 14 Issue: 0 Pages: 127-135

    • DOI

      10.2142/biophysico.14.0_127

    • NAID

      130005997921

    • ISSN
      2189-4779
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A natural light-driven inward proton pump2016

    • Author(s)
      Keiichi Inoue, Shota Ito, Yoshitaka Kato, Yurika Nomura, Mikihiro Shibata, Takayuki Uchihashi, Satoshi P. Tsunoda and Hideki Kandori
    • Journal Title

      Nature Communications

      Volume: 7 Issue: 1 Pages: 13415-13415

    • DOI

      10.1038/ncomms13415

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] Visualization of asymmetric structure of Ca2+/calmodulin-dependent protein kinase II oligomers by high-speed atomic force microscopy.2018

    • Author(s)
      Mikihiro Shibata, Hideji Murakoshi
    • Organizer
      BPS18 62th Annual Meeting
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Direct imaging of DNA cleavage reaction of CRISPR-Cas9 using high-speed atomic force microscopy.2018

    • Author(s)
      Mikihiro Shibata, Hiroshi Nishimasu, Noriyuki Kodera, Seiichi Hirano, Toshio Ando, Takayuki Uchihashi, and Osamu Nureki
    • Organizer
      The 1st NanoLSI International Symposium -Towards Establishment of New Research Field: Nanoprobe Life Science-
    • Related Report
      2017 Annual Research Report
  • [Presentation] 高速AFMを用いた微生物型ロドプシンの多量体構造の包括的解析2018

    • Author(s)
      池田健人, 井上圭一, 今野雅恵, Manish Singh, 片岡千尋, 吉住玲, 神取秀樹, 内橋貴之, 柴田幹大
    • Organizer
      平成29年度生物物理学会中部支部講演会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 高速AFMによるカルモジュリン結合に伴うカルシウム/カルモジュリン依存性プロテインキナーゼIIの動態観察2018

    • Author(s)
      辻岡尚太朗, 村越秀治, 柴田幹大
    • Organizer
      平成29年度生物物理学会中部支部講演会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Nanoscale Visualization of Membrane Proteins by High-Speed Atomic Force Microscopy2017

    • Author(s)
      Mikihiro Shibata and Takayuki Uchihashi
    • Organizer
      日本化学会第97回春季年会
    • Place of Presentation
      慶應義塾大学 日吉キャンパス
    • Year and Date
      2017-03-16
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 高速原子間力顕微鏡を用いたカルシウム・カルモジュリン依存性プロテインキナーゼIIのダイナミクス観察2017

    • Author(s)
      柴田幹大、村越秀治、内橋貴之
    • Organizer
      平成28年度生物物理学会中部支部講演会
    • Place of Presentation
      名古屋大学
    • Year and Date
      2017-03-06
    • Related Report
      2016 Research-status Report
  • [Presentation] 高速AFMを用いたナノバイオイメージング2017

    • Author(s)
      柴田幹大
    • Organizer
      理学談話会
    • Place of Presentation
      金沢大学
    • Year and Date
      2017-02-23
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] 高速AFMによる生きた細胞のナノスケール観察2017

    • Author(s)
      柴田幹大
    • Organizer
      第1回生体界面研究会若手の会
    • Place of Presentation
      金沢大学
    • Year and Date
      2017-02-09
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] 高速原子間力顕微鏡によるナノバイオイメージング2017

    • Author(s)
      柴田幹大
    • Organizer
      第2回新学術創成研究機構シンポジウム
    • Place of Presentation
      金沢大学
    • Year and Date
      2017-01-26
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] High-speed atomic force microscopy imaging of oligomeric states of microbial rhodopsins.2017

    • Author(s)
      Mikihiro Shibata, Takayuki Uchihashi
    • Organizer
      International Symposium on Biophysics of Rhodopsin
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 高速AFMによる生体分子のナノスケールイメージング2017

    • Author(s)
      柴田幹大
    • Organizer
      革新的統合バイオ研究コアワークショップ「多様な生命現象の数理モデル研究」
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] High-speed AFM imaging of membrane proteins in lipid nanodiscs.2017

    • Author(s)
      Mikihiro Shibata
    • Organizer
      55th生物物理学会年会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] High-speed AFM visualized DNA cleavage reaction of CRISPR-Cas9.2017

    • Author(s)
      Mikihiro Shibata, Hiroshi Nishimasu, Noriyuki Kodera, Seiichi Hirano, Toshio Ando, Takayuki Uchihashi and Osamu Nureki
    • Organizer
      International Symposium on Atomic Force Microscopy at Solid-Liquid Interfaces
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 高速バイオAFMによる生体分子のナノイメージング2017

    • Author(s)
      柴田幹大
    • Organizer
      金沢大学新学術創成研究機構異分野融合研究会「がん研究と高速バイオAFM」
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 生体分子の動きを観る高速原子間力顕微鏡2017

    • Author(s)
      柴田幹大
    • Organizer
      自然科学研究機構新分野創成センターシンポジウム「分野横断・分野融合研究による生命創成を探求する新しい科学の創成」
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Oligomeric states of microbial rhodopsins studied by high-speed atomic force microscopy.2017

    • Author(s)
      Kento Ikeda, Keiichi Inoue, Masae Konno, Rei Abe-Yoshizumi, Chihiro Kataoka, Hideki Kandori, Takayuki Uchihashi, and Mikihiro Shibata
    • Organizer
      International Symposium on Atomic Force Microscopy at Solid-Liquid Interfaces
    • Related Report
      2017 Annual Research Report
  • [Presentation] 高速AFMを用いたCRISPR/Cas9のDNA切断作動機構の解明2016

    • Author(s)
      柴田幹大, 西増弘志, 古寺哲幸, 平野清一, 濡木理, 内橋貴之
    • Organizer
      日本生体エネルギー研究会第42回討論会
    • Place of Presentation
      名古屋工業大学
    • Year and Date
      2016-12-19
    • Related Report
      2016 Research-status Report
  • [Presentation] Visualization of protein molecules in action by high-speed atomic force microscopy.2016

    • Author(s)
      Mikihiro Shibata, Noriyuki Kodera, Takayuki Uchihashi and Toshio Ando
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場
    • Year and Date
      2016-11-25
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] Nanoscale imaging of living cells by high-speed AFM.2016

    • Author(s)
      Mikihiro Shibata
    • Organizer
      OIIB Retreat 2016
    • Place of Presentation
      三河湾リゾートリンクス
    • Year and Date
      2016-11-21
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] 高速原子間力顕微鏡によるCRISPR-Cas9のDNA切断作動メカニズムの解明2016

    • Author(s)
      柴田幹大, 西増弘志, 古寺哲幸, 平野清一, 濡木理, 内橋貴之
    • Organizer
      新学術領域「柔らかな分子系」第4回公開シンポジウム
    • Place of Presentation
      名古屋工業大学
    • Year and Date
      2016-10-27
    • Related Report
      2016 Research-status Report
  • [Presentation] Nanoscale visualization of morphological dynamics of living neurons by high-speed atomic force microscopy.2016

    • Author(s)
      Mikihiro Shibata, Takayuki Uchihashi and Toshio Ando
    • Organizer
      第89回日本生化学会大会
    • Place of Presentation
      東北大学
    • Year and Date
      2016-09-25
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] High-speed atomic force microscopy for nano-scale imaging in live cells.2016

    • Author(s)
      Mikihiro Shibata
    • Organizer
      OptoBioTechnology Symposium on “Membrane Protein Dynamics”
    • Place of Presentation
      名古屋工業大学
    • Year and Date
      2016-07-12
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] カルシウム/カルモジュリン依存性プロテインキナーゼIIの高速原子間力顕微鏡観察2016

    • Author(s)
      柴田幹大、村越秀治、内橋貴之
    • Organizer
      新学術領域「柔らかな分子系」第5回全体合宿会議
    • Place of Presentation
      あてま高原リゾート ホテルベルナティオ(新潟県, 十日町)
    • Year and Date
      2016-05-30
    • Related Report
      2016 Research-status Report
  • [Remarks] Watch CRISPR edit genes in real time

    • URL

      http://www.sciencemag.org/news/2017/11/watch-crispr-edit-genes-real-time

    • Related Report
      2017 Annual Research Report
  • [Remarks] An Astonishing Video Shows CRISPR Editing DNA

    • URL

      https://www.theatlantic.com/science/archive/2017/11/crispr-video-real-time/545603/

    • Related Report
      2017 Annual Research Report
  • [Remarks] The top CRISPR papers of 2017

    • URL

      http://blogs.nature.com/ofschemesandmemes/2018/01/16/our-10-most-popular-crispr-papers-of-2017

    • Related Report
      2017 Annual Research Report
  • [Remarks] 高速原子間力顕微鏡によって可視化されたCRISPR-Cas9の実空間でのリアルタイム動態

    • URL

      https://www.natureasia.com/ja-jp/ncomms/abstracts/90764

    • Related Report
      2017 Annual Research Report
  • [Remarks] A Breathtaking New GIF Shows CRISPR Chewing Up DNA

    • URL

      https://www.yahoo.com/news/breathtaking-gif-shows-crispr-chewing-000200485.html

    • Related Report
      2017 Annual Research Report
  • [Patent(Industrial Property Rights)] 走査型プローブ顕微鏡2016

    • Inventor(s)
      内橋貴之、柴田幹大、古寺哲幸
    • Industrial Property Rights Holder
      内橋貴之、柴田幹大、古寺哲幸
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2016-234584
    • Filing Date
      2016-12-01
    • Related Report
      2016 Research-status Report

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Published: 2016-04-21   Modified: 2019-03-29  

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