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Molecular mechanism for activation of RBR-type E3 ubiquitin ligases

Research Project

Project/Area Number 16K18545
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Cell biology
Research InstitutionTokyo Metropolitan Institute of Medical Science

Principal Investigator

YAMANO Koji  公益財団法人東京都医学総合研究所, 生体分子先端研究分野, 主席研究員 (30547526)

Project Period (FY) 2016-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2017: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2016: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywordsユビキチン / RBR型リガーゼ / ミトコンドリア / マイトファジー / ユビキチンリガーゼ / タンパク質分解 / 細胞生物学
Outline of Final Research Achievements

E3 ligases transfer ubiquitin molecules to substrate proteins for their degradation. Molecular functions of RBR-type E3 ligases, however, largely remain unknown because their activities normally keep autoinhibited. Parkin is one of the RBR type E3 ligase that activates only on the dysfunctional mitochondria. In this study, I developed a method in which Parkin activation can be monitored in cultured cells through the interaction of E2 enzymes. E2 enzymes play a role in transferring ubiquitin molecule to E3 ligases and 40 different E2 enzymes are encoded in human genome. Using the method, I identified several E2 enzymes to interact with activated Parkin on the damaged mitochondria. Furthermore, this method also identified that one of the uncharacterized RBR-type E3 ligase forms several dot-like structures in the nucleus, and another RBR-type E3 ligase localizes on the lipid droplets.

Report

(3 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • Research Products

    (12 results)

All 2018 2017 2016 Other

All Journal Article (3 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 3 results,  Open Access: 2 results) Presentation (5 results) (of which Int'l Joint Research: 3 results,  Invited: 4 results) Remarks (4 results)

  • [Journal Article] Endosomal Rab cycles regulate Parkin-mediated mitophagy.2018

    • Author(s)
      Yamano K, Wang C, Sarraf SA, Münch C, Kikuchi R, Noda NN, Hizukuri Y, Kanemaki MT, Harper W, Tanaka K, Matsuda N, Youle RJ.
    • Journal Title

      eLife

      Volume: 7

    • DOI

      10.7554/elife.31326

    • NAID

      120006457172

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Structural basis for specific cleavage of Lys6-linked polyubiquitin chains by USP302017

    • Author(s)
      Sato Yusuke、Okatsu Kei、Saeki Yasushi、Yamano Koji、Matsuda Noriyuki、Kaiho Ai、Yamagata Atsushi、Goto-Ito Sakurako、Ishikawa Minoru、Hashimoto Yuichi、Tanaka Keiji、Fukai Shuya
    • Journal Title

      Nature Structural & Molecular Biology

      Volume: 24 Issue: 11 Pages: 911-919

    • DOI

      10.1038/nsmb.3469

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Parkinson’s disease-related DJ-1 functions in thiol quality control against aldehyde attack in vitro2017

    • Author(s)
      Matsuda Noriyuki、Kimura Mayumi、Queliconi Bruno Barros、Kojima Waka、Mishima Masaki、Takagi Kenji、Koyano Fumika、Yamano Koji、Mizushima Tsunehiro、Ito Yutaka、Tanaka Keiji
    • Journal Title

      Scientific Reports

      Volume: 7 Issue: 1 Pages: 12816-12816

    • DOI

      10.1038/s41598-017-13146-0

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] Positive Feedback Ubiquitylation Cycles upon Parkin-mediated Mitophagy2017

    • Author(s)
      Koji Yamano
    • Organizer
      OsakaMito2017 -International Workshop on Mitochondrial Dynamics-
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Positive Feedback Ubiquitination Cycles upon Parkin-mediated Mitophagy2017

    • Author(s)
      Koji Yamano
    • Organizer
      2017 International Protein Metabolism & Disease Conference
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] ユビキチンコードによる損傷ミトコンドリアの標識2017

    • Author(s)
      山野 晃史, 松田 憲之
    • Organizer
      2017年度生命科学系学会合同年次大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Autophagosome morphogenesis upon Parkin-mediated mitophagy2016

    • Author(s)
      Koji Yamano, Richard J. Youle, Keiji Tanaka, and Noriyui Matsuda
    • Organizer
      The 13th Conference of Asian Society for Mitochondrial Research and Medicine [ASMRM] and the 16th Conference of Japanese Society of Mitochondrial Research and Medicine [J-mit]
    • Place of Presentation
      TKP Garden City Shinagawa, Tokyo
    • Year and Date
      2016-11-01
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] マイトファジーにおけるオートファゴソーム形成機構2016

    • Author(s)
      山野 晃史, 松田憲之, Richard J. Youle, 田中 啓二
    • Organizer
      第89回日本生化学会大会 3S01-4
    • Place of Presentation
      仙台国際センター(宮城県仙台市)
    • Year and Date
      2016-09-27
    • Related Report
      2016 Research-status Report
    • Invited
  • [Remarks] 不良ミトコンドリアを分解する新しい仕組みを解明

    • URL

      http://www.igakuken.or.jp/topics/2018/0123.html

    • Related Report
      2017 Annual Research Report
  • [Remarks] 遺伝性パーキンソン病の発症にアルデヒドが関与する

    • URL

      http://www.igakuken.or.jp/topics/2017/1009.html

    • Related Report
      2017 Annual Research Report
  • [Remarks] 山野研究員らの論文がthe Best of JBC 2015に選ばれました

    • URL

      http://www.igakuken.or.jp/topics/2015/1216.html

    • Related Report
      2016 Research-status Report
  • [Remarks] ユビキチンプロジェクトHP

    • URL

      http://www.igakuken.or.jp/protein/

    • Related Report
      2016 Research-status Report

URL: 

Published: 2016-04-21   Modified: 2019-03-29  

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