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Analysis of selenium metabolism utilizing high concentration selenium-resistant bacteria

Research Project

Project/Area Number 16K18691
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Applied biochemistry
Research InstitutionRitsumeikan University

Principal Investigator

Tobe Ryuta  立命館大学, 生命科学部, 助教 (00758823)

Co-Investigator(Renkei-kenkyūsha) MIHARA Hisaaki  立命館大学, 生命科学部, 教授 (30324693)
Research Collaborator HIROSE Yuu  豊橋技術科学大学, 環境生命工学系, 助教
Project Period (FY) 2016-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2017: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2016: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
KeywordsSelenium / Thioredoxin / Bacteria / Selenophosphate / Selenite reduction / Selenide / Selenoprotein / Reduction / セレン / セレンタンパク質 / 微生物 / 代謝 / 酵素
Outline of Final Research Achievements

The selenium-resistant bacterium Pseudomonas sp. F2a was isolated from a soil around the selenium accumulation area in India, and its whole genome sequence was revealed using a next-generation sequencer. Based on the genomic information, the genes that may be involved in selenium resistance or selenium reduction ability were identified. Some of the identified genes were cloned and analyzed as purified proteins. In addition, the intermediate of selenite and the reductant protein was analyzed by MS.

Report

(3 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • Research Products

    (24 results)

All 2018 2017 2016 Other

All Int'l Joint Research (2 results) Journal Article (4 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 3 results,  Open Access: 1 results) Presentation (16 results) (of which Int'l Joint Research: 4 results,  Invited: 1 results) Book (1 results) Remarks (1 results)

  • [Int'l Joint Research] Thapar University(India)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] Thapar University(India)

    • Related Report
      2016 Research-status Report
  • [Journal Article] Characterization of a Novel Porin-Like Protein, ExtI, from Geobacter sulfurreducens and Its Implication in the Reduction of Selenite and Tellurite2018

    • Author(s)
      Jahan Mst. Ishrat、Tobe Ryuta、Mihara Hisaaki
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 19 Issue: 3 Pages: 809-809

    • DOI

      10.3390/ijms19030809

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Radioactive 75Se Labeling and Detection of Selenoproteins2018

    • Author(s)
      Yim Sun Hee、Tobe Ryuta、Turanov Anton A.、Carlson Bradley A.
    • Journal Title

      Methods in Molecular Biology

      Volume: 1661 Pages: 177-192

    • DOI

      10.1007/978-1-4939-7258-6_13

    • ISBN
      9781493972579, 9781493972586
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Identification of selenomethionine, selenocysteine, and Se-methylselenocysteine in the selenium-enriched common ice plant2017

    • Author(s)
      Ryuta Tobe, Hiroki Koga, Yasushi Tani, Hirotaka Tajima, Akihisa Tsuji, Hisaaki Mihara
    • Journal Title

      Biomedical Research on Trace Elements

      Volume: 28 Issue: 3 Pages: 135-142

    • DOI

      10.11299/brte.28.135

    • NAID

      130006286264

    • ISSN
      0916-717X, 1880-1404
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 鉄硫黄クラスターおよびセレンタンパク質生合成とその分子機構2017

    • Author(s)
      戸部隆太, 三原久明
    • Journal Title

      硫酸と工業

      Volume: 70 Pages: 23-34

    • NAID

      40021105802

    • Related Report
      2017 Annual Research Report
  • [Presentation] Geobacter sulfurreducens 由来の新奇マルチヘム含有セレンタンパク質の解析2018

    • Author(s)
      戸部隆太、神農美希、伊豆由紀子、嶌本奈々、三原久明
    • Organizer
      日本農芸化学会2018年度大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Geobacter sulfurreducens が有するマルチヘム含有セレンタンパク質の精製と機能解析2017

    • Author(s)
      戸部隆太 神農美希 嶌本奈々 三原久明
    • Organizer
      日本農芸化学会2017年度大会
    • Place of Presentation
      京都女子大学(京都府、京都市)
    • Year and Date
      2017-03-18
    • Related Report
      2016 Research-status Report
  • [Presentation] 微生物におけるセレンおよびテルルの代謝2017

    • Author(s)
      戸部隆太
    • Organizer
      第3回日本セレン研究会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Pseudomonas putida の D-リジン異化代謝における制御機構の解析2017

    • Author(s)
      戸部隆太、佐藤大起、山田拓明、三原久明
    • Organizer
      日本ビタミン学会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Geobacter sulfurreducens 由来の新規マルチヘム含有セレンタンパク質MHSEPの解析2017

    • Author(s)
      戸部隆太,神農美希,Jahan Ishrat,嶌本奈々,松嵜祐樹,伊豆由紀子,三原久明
    • Organizer
      酵素補酵素研究会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 細菌におけるセレン化合物の代謝とセレンタンパク質生合成2017

    • Author(s)
      戸部隆太、三原久明
    • Organizer
      日本微量元素学会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Delivery of selenide to selenophosphate synthetase for selenoprotein biosynthesis in bacteria2017

    • Author(s)
      Ryuta Tobe, Atsuki Shimizu, Satoru Hagita, Takashi Tamura, Takukya Ogawa, Kaito Kiriyama, Atsuko Tai, Tatsuo Kurihara, Tejo N. Prakash, Hisaaki Mihara
    • Organizer
      The 11th International Symposium on Selenium in Biology and Medicine (Se 2017)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Cellulomonas sp. D3a 株におけるカルコゲンオキシアニオン還元機構の解析2017

    • Author(s)
      戸部隆太、名田イサナ、田島寛隆、広瀬侑、今井友也、Tejo N. Prakash、三原久明
    • Organizer
      環境微生物系学会合同大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 細菌におけるテルル酸還元機構の解析2017

    • Author(s)
      戸部隆太, 西田亮, 生田帆河, 葛野佑香, 森聡美, 安間友香理, 広瀬侑, Tejo N. Prakash, 三原久明
    • Organizer
      特殊環境微生物セミナー2017
    • Related Report
      2017 Annual Research Report
  • [Presentation] Selenium delivery system for selenophosphate synthetase in bacteria2016

    • Author(s)
      Tobe, R. Shimizu, A. Hagita, S. Prakash, N. T. Mihara, H.
    • Organizer
      The 6th International Selenium Conference (2016)
    • Place of Presentation
      Guangzhou and Shenzhen (China)
    • Year and Date
      2016-10-22
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] グラム陽性菌Clostridium sticklandii 由来D-セレノシスチンα,β-リアーゼに関する研究2016

    • Author(s)
      戸部隆太 中尾領太 片浦美沙 三原久明
    • Organizer
      日本農芸化学会関西支部第496回講演会
    • Place of Presentation
      滋賀県立大学(滋賀県、彦根市)
    • Year and Date
      2016-09-17
    • Related Report
      2016 Research-status Report
  • [Presentation] Purification and characterization of D-cysteine desulfhydrase from Gram-positive bacterium Clostridium sticklandii2016

    • Author(s)
      Tobe, R. Kataura, M. Nakao, R. Mihara, H.
    • Organizer
      The Fifth International Conference on Cofactors & Active Enzyme Molecule 2016
    • Place of Presentation
      宇奈月国際会館(富山県、黒部市)
    • Year and Date
      2016-09-05
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] セレンタンパク質生合成系におけるセレン供給体の解明2016

    • Author(s)
      戸部隆太 清水敦貴 波北悟 Prakash, N. Tejo 三原久明
    • Organizer
      第27回日本微量元素学会学術集会
    • Place of Presentation
      芝蘭会館(京都府、京都市)
    • Year and Date
      2016-07-31
    • Related Report
      2016 Research-status Report
  • [Presentation] セレン強化植物およびセレン耐性微生物に含まれるセレン種のスペシエーション分析2016

    • Author(s)
      戸部隆太 古賀裕紀 田島寛隆 Prakash, N. T. 三原久明
    • Organizer
      第33回日本微量栄養素学会学術集会
    • Place of Presentation
      京都リサーチパーク(京都府、京都市)
    • Year and Date
      2016-06-25
    • Related Report
      2016 Research-status Report
  • [Presentation] 細菌におけるセレノリン酸合成酵素への基質供給系の解析2016

    • Author(s)
      戸部隆太 波北悟 清水敦貴 三原久明
    • Organizer
      日本ビタミン学会第68回大会
    • Place of Presentation
      富山国際会議場(富山県、富山市)
    • Year and Date
      2016-06-18
    • Related Report
      2016 Research-status Report
  • [Presentation] Characterization and genome analysis of Cellulomonas sp. D3a, a selenium and tellurium oxyanions-reducing bacterium2016

    • Author(s)
      Tobe, R. Hirose, Y. Nada, I. Saito, S. Tajima, H. Prakash, N.T. Mihara, H.
    • Organizer
      The 13th International Conference on the Chemistry of Selenium and Tellurium
    • Place of Presentation
      長良川国際会議場 (岐阜県、岐阜市)
    • Year and Date
      2016-05-26
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Book] Selenium in plants; Bacteria versus Selenium: A View from the Inside Out2017

    • Author(s)
      Staicu LC, Oremland RS, Tobe R, Mihara H
    • Total Pages
      30
    • Publisher
      Springer
    • ISBN
      9781461410256
    • Related Report
      2017 Annual Research Report
  • [Remarks] 立命館大学生命科学部応用分子微生物学研究室

    • URL

      http://www.ritsumei.ac.jp/lifescience/skbiot/mihara/Top.html

    • Related Report
      2017 Annual Research Report

URL: 

Published: 2016-04-21   Modified: 2019-03-29  

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