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Development of sophisticated small RNAs utilizing the properties of functional groups

Research Project

Project/Area Number 16K18911
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Drug development chemistry
Research InstitutionGifu University

Principal Investigator

KITAMURA Yoshiaki  岐阜大学, 工学部, 助教 (10503659)

Research Collaborator KITADE YUKIO  愛知工業大学, 工学部, 教授 (20137061)
IKEDA MASATO  岐阜大学, 工学部, 教授 (20432867)
AYA SHIBATA  岐阜大学, 工学部, 助教 (50462693)
Project Period (FY) 2016-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2017: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2016: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywords核酸医薬 / 機能性短鎖RNA / 環境応答 / 分解酵素耐性 / 簡便合成 / CuAAC / ポスト修飾 / 効率的合成 / 薬学 / 有機化学 / 生理活性
Outline of Final Research Achievements

Small interfering RNAs (siRNAs) and microRNAs inhibit gene expression by RNA interference (RNAi) and thus have great potential as nucleic acid-based drugs. However, naked RNA strands have many problems that hinder their application as therapeutics, such as their rapid degradation in biological fluids, poor cellular uptake, and off-target effects. In the course of our study, we focused on studying siRNAs containing nucleoside mimics in their 3'-termini. In this study, we found that furanoid glycals could be useful as stimulus-responsive units. In addition, it was found that introduction of 2-O-benzylated abasic nucleoside (RHOBn) at the 3'-end of an siRNA greatly improves resistance towards various nucleases. Furthermore, we have developed a scalable synthetic method for phosphoramidite derivatives of artificial nucleosides including 1-deoxy-1-ethynyl-β-D-ribofuranose (RE). These results should help to advance the development of RNAi-based medicine.

Report

(3 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • Research Products

    (9 results)

All 2018 2017 2016

All Journal Article (3 results) (of which Peer Reviewed: 3 results,  Acknowledgement Compliant: 1 results) Presentation (6 results) (of which Int'l Joint Research: 3 results)

  • [Journal Article] Nucleobase azide-ethynylribose click chemistry contributes to stabilizing oligonucleotide duplexes and stem-loop structures2017

    • Author(s)
      Yoshiaki Kitamura, Ryo Asakura, Koki Terazawa, Aya Shibata, Masato Ikeda, Yukio Kitade
    • Journal Title

      Bioorganic & Medicinal Chemistry Letters

      Volume: 27 Issue: 12 Pages: 2655-2658

    • DOI

      10.1016/j.bmcl.2017.04.023

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Introduction of 2-O-benzyl abasic nucleosides to the 3'-overhang regions of siRNAs greatly improves nuclease resistance2017

    • Author(s)
      Yuki Nagaya, Yoshiaki Kitamura, Aya Shibata, Masato Ikeda, Yukihiro Akao, Yukio Kitade
    • Journal Title

      Bioorganic & Medicinal Chemistry Letters

      Volume: 27 Issue: 24 Pages: 5454-5456

    • DOI

      10.1016/j.bmcl.2017.10.070

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Practical modification of peptides using ligand-free copper-catalyzed azide-alkyne cycloaddition2016

    • Author(s)
      Yoshiaki Kitamura, Ryo Sakamoto, Takao Shiraishi, Haruka Oguri, Satoshi Ohno, Yukio Kitade
    • Journal Title

      Tetrahedron

      Volume: 72 Issue: 27-28 Pages: 4016-4021

    • DOI

      10.1016/j.tet.2016.05.029

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] 塩基部欠損ヌクレオシド類を 3’末端に有する siRNA の合成と性質評価2018

    • Author(s)
      長屋優貴, 喜多村徳昭, 柴田綾, 池田将, 赤尾幸博, 北出幸夫
    • Organizer
      日本薬学会第138年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Nucleobase azide-ethynylribose click chemistry contributes to stabilizing oligonucleotide duplexes and stem-loop structures2017

    • Author(s)
      Yoshiaki Kitamura, Ryo Asakura, Koki Terazawa, Aya Shibata, Masato Ikeda, Yukio Kitade
    • Organizer
      第26回国際複素環化学会議(26th ISHC Congress)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Nucleobase azide-ethynylribose click chemistry: stabilizing oligonucleotide duplexes and stem-loop structures2017

    • Author(s)
      Yoshiaki Kitamura, Ryo Asakura, Koki Terazawa, Aya Shibata, Masato Ikeda, Yukio Kitade
    • Organizer
      第44回国際核酸化学シンポジウム(ISNAC2017)・日本核酸化学会第1回年会
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] リボース誘導体を母核とする新規traceless型リンカーの開発2017

    • Author(s)
      寺澤康輝, 喜多村徳昭, 長屋優貴, 柴田綾, 池田将, 北出幸夫
    • Organizer
      日本病院薬剤師会東海ブロック・日本薬学会東海支部合同学術大会2017
    • Related Report
      2017 Annual Research Report
  • [Presentation] トリアゾール環形成による二本鎖核酸の安定化2016

    • Author(s)
      朝倉領、喜多村徳昭、柴田綾、池田将、北出幸夫
    • Organizer
      日本病院薬剤師会東海ブロック・日本薬学会東海支部合同学術大会2016
    • Place of Presentation
      長良川国際会議場(岐阜)
    • Year and Date
      2016-10-30
    • Related Report
      2016 Research-status Report
  • [Presentation] Synthesis of chemically modified siRNAs bearing high affinity molecules for human Argonaute 2 PAZ domain and their biological properties2016

    • Author(s)
      Yoshiaki Kitamura, Yuki Nagaya, Kazuhito Kondo, Ryo Asakura, Qin Ren, Mahmoud Kandeel, Aya Shibata, Masato Ikeda, Yukio Kitade
    • Organizer
      第43回国際核酸化学シンポジウム(ISNAC2016)
    • Place of Presentation
      熊本大学(熊本)
    • Year and Date
      2016-09-27
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research

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Published: 2016-04-21   Modified: 2019-03-29  

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