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Molecular basis of ATP synthesis machinery from parasite living under microenvironment

Research Project

Project/Area Number 16K19114
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Parasitology (including sanitary zoology)
Research InstitutionNagasaki University

Principal Investigator

INAOKA Ken Daniel  長崎大学, 熱帯医学・グローバルヘルス研究科, 助教 (10623803)

Project Period (FY) 2016-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2017: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2016: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords寄生虫 / ATP合成 / ASCT / 生化学的解析 / 結晶構造解析 / ミトコンドリア様オルガネラ / 寄生虫学 / 感染症 / 酵素 / 蛋白質 / 生体分子 / 特殊環境
Outline of Final Research Achievements

Trypanosoma brucei produces acetate (Ace) in mitochondria by two different enzymes: acetyl-CoA (ACoA) hydrolase or acetate:succinate CoA-transferase (ASCT). Under physiological condition, ASCT transfers the CoA from ACoA to succinate (Suc) to form Ace and succinyl-CoA (SCoA), which is consequently converted back to Suc by SCoA synthase (SCS) with net production of 1 mol of ATP per mol of ACoA in a process named ASCT/SCS cycle. So far, no biochemical information for ASCT family of CoA-transferase is reported. In this project, an over-expression system and purification of active TbASCT together with a novel sensitive method to measure ASCT activity have been developed. Purified TbASCT obeys Michaelis-Menten kinetics with Kcat of 202 ATP per second and show high affinity for ACoA (Km = 47 μM) than succinate (9.86 mM). A method for in-gel ASCT activity staining was developed showing evidence that TbASCT is active as homotetramer which was consistent to the crystal structure.

Report

(3 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • Research Products

    (27 results)

All 2018 2017 2016 Other

All Int'l Joint Research (2 results) Journal Article (5 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 5 results,  Open Access: 3 results) Presentation (19 results) (of which Int'l Joint Research: 7 results) Remarks (1 results)

  • [Int'l Joint Research] ボルドー大学(フランス)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] ミュンヘン大学(ドイツ)

    • Related Report
      2017 Annual Research Report
  • [Journal Article] In silico, in vitro, X-ray crystallography, and integrated strategies for discovering spermidine synthase inhibitors for Chagas disease2017

    • Author(s)
      Yoshino Ryunosuke、Yasuo Nobuaki、Hagiwara Yohsuke、Ishida Takashi、Inaoka Daniel Ken、Amano Yasushi、Tateishi Yukihiro、Ohno Kazuki、Namatame Ichiji、Niimi Tatsuya、Orita Masaya、Kita Kiyoshi、Akiyama Yutaka、Sekijima Masakazu
    • Journal Title

      Scientific Reports

      Volume: 7 Issue: 1 Pages: 1-9

    • DOI

      10.1038/s41598-017-06411-9

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Expression, purification, and crystallization of type 1 isocitrate dehydrogenase from Trypanosoma brucei brucei2017

    • Author(s)
      Wang Xinying、Inaoka Daniel Ken、Shiba Tomoo、Balogun Emmanuel Oluwadare、Allmann Stefan、Watanabe Yoh-ichi、Boshart Michael、Kita Kiyoshi、Harada Shigeharu
    • Journal Title

      Protein Expr. Purif.

      Volume: 138 Pages: 56-62

    • DOI

      10.1016/j.pep.2017.06.011

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Glycerol kinase of African trypanosomes possesses an intrinsic phosphatase activity2017

    • Author(s)
      Balogun Emmanuel Oluwadare、Inaoka Daniel Ken、Shiba Tomoo、Tokuoka Suzumi M.、Tokumasu Fuyuki、Sakamoto Kimitoshi、Kido Yasutoshi、Michels Paul A.M.、Watanabe Yoh-Ichi、Harada Shigeharu、Kita Kiyoshi
    • Journal Title

      Biochimica et Biophysica Acta (BBA) - General Subjects

      Volume: 1861 Issue: 11 Pages: 2830-2842

    • DOI

      10.1016/j.bbagen.2017.07.028

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Deep Imaging of Plant Roots by a Rapid Transparency Technique TOMEI2017

    • Author(s)
      Sakamoto Yuki、Matsunaga Sachihiro
    • Journal Title

      CYTOLOGIA

      Volume: 82 Issue: 3 Pages: 221-222

    • DOI

      10.1508/cytologia.82.221

    • NAID

      130006068211

    • ISSN
      0011-4545, 1348-7019
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Discovery of New Class of Trypanocidal Compounds Targeting the Energy Metabolism of African Trypanosomes2017

    • Author(s)
      Balogun Emmanuel Oluwadare、Inaoka Daniel Ken、Shiba Tomoo、Watanabe Yoh-Ichi、Moore Anthony、Harada Shigeharu、Kita Kiyoshi
    • Journal Title

      Open Forum Infect. Dis.

      Volume: 4 Issue: suppl_1 Pages: S121-S121

    • DOI

      10.1093/ofid/ofx163.154

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] Biochemical characterization of in vitro reconstituted Acetate:succinate CoA transferase/Succinyl-CoA synthetase cycle from Trypanosoma brucei and identification of inhibitors2018

    • Author(s)
      Kota Mochizuki, Daniel Ken Inaoka, Emmanuel O. Balogun, Tomoo Shiba, Shigeharu Harada, Frederic Bringaud, Kenji Hirayama and Kiyoshi Kita
    • Organizer
      The U.S.-Japan Cooperative Medical Science Program the 48th Joint Conference on Parasitic Diseases
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Trypanosoma brucei の Acetate:succinate CoA transferase/Succinyl-CoA synthetase サイクルの in vitro 再構築を用いた生化学的解析及び阻害剤探索2018

    • Author(s)
      望月 恒太 、稲岡 健ダニエル、Balogun O. Emmanuel、志波 智生、 原田 繁春、Frederic Bringaud、平山 謙二、北 潔
    • Organizer
      第87回日本寄生虫学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] シアン耐性呼吸を標的とした抗トリパノソーマ薬の臨床試験へむけて2018

    • Author(s)
      城戸 康年、稲岡 健ダニエル、松崎 素道、志波 智生、原田 繁春、 斎本 博之、山本 雅一、上村 尚人、北 潔
    • Organizer
      第87回日本寄生虫学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Insights into the quinol and dioxygen redox cycle of Trypanosome Alternative Oxidase2018

    • Author(s)
      Daniel Ken Inaoka, Tomoo Shiba, Yasutoshi Kido, Hiroyuki Saimoto, Anthony L. Moore, Shigeharu Harada and Kiyoshi Kita
    • Organizer
      8th Meeting ACETOTRYP/GLYCONOV
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Biochemical characterization, site-directed mutagenesis Acetate:succinate CoA transferase from Trypanosoma brucei and T. cruzi and identification of inhibitors2018

    • Author(s)
      Kota Mochizuki, Daniel Ken Inaoka, Emmanuel O. Balogun, Tomoo Shiba, Shigeharu Harada, Frederic Bringaud, Kenji Hirayama and Kiyoshi Kita
    • Organizer
      8th Meeting ACETOTRYP/GLYCONOV
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Glycerol kinase of African trypanosomes possess additional enzymatic activities that may aid to degrade potential toxic metabolites2018

    • Author(s)
      Emmanuel O. Balogun, Daniel Ken Inaoka, Tomoo Shiba, Shigeharu Harada and Kiyoshi Kita
    • Organizer
      8th Meeting ACETOTRYP/GLYCONOV
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Additional enzymatic activities of glycerol kinase from Trypanosoma brucei2017

    • Author(s)
      Emmanuel O. Balogun, Daniel Ken Inaoka, Tomoo Shiba, Yoh-Ichi Watanabe, Anthony Moore, Shigeharu Harada and Kiyoshi Kita
    • Organizer
      7th Meeting ACETOTRYP/GLYCONOV
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Purification of Leishmania mexicana serine hydroxymethyltransferase and aldehyde dehydrogenase2017

    • Author(s)
      Kota Mochizuki, Daniel Ken Inaoka, Frederic Bringaud, Kenji Hirayama and Kiyoshi Kita
    • Organizer
      7th Meeting ACETOTRYP/GLYCONOV
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Structural insights into mechanism of NADP+/NAD+ recognition by Trypanosoma brucei glycosomal isocitrate dehydrogenase2017

    • Author(s)
      Xinying Wang, Daniel Ken Inaoka, Emmanuel O. Balogun, Nicole Ziebart, Stefan Allmann, Michael Boshart, Frederic Bringaud, Tomoo Shiba, Shigeharu Harada and Kiyoshi Kita
    • Organizer
      7th Meeting ACETOTRYP/GLYCONOV
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] トリパノソーマ科原虫の ATP 産生と共役した酢酸:コハク酸 CoA 転移酵素とサクシニル CoA 転移酵素の構造生物学的な特徴2017

    • Author(s)
      稲岡 ダニエル健、バログン エマニュエル、鈴木 重雄、志波 智生、 Frederic Bringaud 、原田 繁春、北 潔
    • Organizer
      第86回日本寄生虫学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Structural insights into NAD+ and NADP+ recognition from Trypanosoma brucei Glycosomal Isocitrate Dehydrogenase2017

    • Author(s)
      Xinying Wang、Daniel Ken Inaoka、Emmanuel O. Balogun、Nicole Ziebart、Stefan Allmann、Michael Boshart、Frederic Bringaud、志波 智生、原田 繁春、 北 潔
    • Organizer
      第86回日本寄生虫学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 抗トリパノソーマ薬アスコフラノンの臨床応用へむけた包括的薬剤開発2017

    • Author(s)
      城戸 康年、稲岡 健ダニエル、松崎 素道、志波 智生、原田 繁春、 斎本 博之、山本 雅一、北 潔
    • Organizer
      第86回日本寄生虫学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] トリパノソーマ科原虫のミトコンドリアで行われるATP産生と共役した酢酸発酵2017

    • Author(s)
      Daniel Ken Inaoka, Balogun O. Emmanuel, Mochizuki Kota, Shigeo Suzuki, Shiba Tomoo, Frederic Bringaud, Shigeharu Harada and Kiyoshi Kita
    • Organizer
      ミトコンドリアサイエンスワークショップ2017
    • Related Report
      2017 Annual Research Report
  • [Presentation] Glycosomal metabolic enzyme Isocitrate Dehydrogenase from Trypanosoma brucei shows dual coenzyme specificity2017

    • Author(s)
      Xinying Wang, Daniel Ken Inaoka, Emmanuel O. Balogun, Fumie Hamano, Nicole Ziebart, Stefan Allmann, Michael Boshart, Frederic Bringaud, Fuyuki Tokumasu, Tomoo Shiba, Shigeharu Harada and Kiyoshi Kita
    • Organizer
      第 77 回日本寄生虫学会東日本支部大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Trypanosoma科原虫のAcetate:succinate CoA transferase/Succinyl-CoA synthetaseサイクルのin vitro再構築及び生化学的解析と阻害剤探索2017

    • Author(s)
      望月 恒太、稲岡 健ダニエル、Balogun O. Emmanuel、志波 智生、原田 繁春、Frederic Bringaud、平山 謙二、北 潔
    • Organizer
      第70回日本寄生虫学会南日本支部大会・67回日本衛生動物学会南日本支部大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Trypanosoma科原虫のAcetate:succinate CoA transferase /Succinyl-CoA Synthetaseサイクルの生化学的解析2017

    • Author(s)
      望月 恒太、稲岡 ダニエル健、バロガン エマニュエル、志波 智生、原田 繁春、フレデリック ブリンゴード、平山 謙二、北 潔
    • Organizer
      生命科学系学会合同年次大会ConBio2017・第40回日本分子生物学会年会・第90回日本生化学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 多様な補酵素特異性を持つアフリカ型トリパノソーマのグリコソームに局在するイソクエン酸脱水素酵素2017

    • Author(s)
      Xinying Wang、稲岡 ダニエル健、Emmanuel O. Balogun、浜野 文三江、Nicole Ziebart、Stefan Allmann、Michael Boshart、Frederic Bringaud、徳舛 富由樹、志波 智生、原田 繁春、北 潔
    • Organizer
      生命科学系学会合同年次大会ConBio2017・第40回日本分子生物学会年会・第90回日本生化学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Trypanosoma cruziのピリミジン代謝経路を構成するアスパラギン酸トランスカルバモイラーゼの構造生物学的研究生体エネルギー2017

    • Author(s)
      早水 僚一、志波 智生、的場 一晃、奈良 武司、北 潔、稲岡 ダニエル健、原田 繁春
    • Organizer
      生命科学系学会合同年次大会ConBio2017・第40回日本分子生物学会年会・第90回日本生化学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Biochemical and structural characterization of mitochondrial ATP-coupled acetate:succinate CoA transferase family from Trypanosomal parasites.2016

    • Author(s)
      稲岡 健ダニエル
    • Organizer
      第89回日本生化学会大会
    • Place of Presentation
      仙台国際センター(宮城県仙台市)
    • Year and Date
      2016-09-25
    • Related Report
      2016 Research-status Report
  • [Remarks] 長崎大学熱帯医学・グローバルヘルス研究科、研究紹介(稲岡 健ダニエル)

    • URL

      http://www.tmgh.nagasaki-u.ac.jp/study_at_tmgh/professors/inaoka_danielken?lang=en

    • Related Report
      2017 Annual Research Report

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Published: 2016-04-21   Modified: 2019-03-29  

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