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Establishment of a comprehensive diagnostic method using next generation sequencer for Alport syndrome

Research Project

Project/Area Number 16K19642
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Pediatrics
Research InstitutionKobe University

Principal Investigator

Yamamura Tomohiko  神戸大学, 医学部附属病院, 特定助教 (30770242)

Research Collaborator IIJIMA Kazumoto  神戸大学, 大学院医学研究科内科系講座小児化学分野, 教授 (00240854)
NOZU Kandai  神戸大学, 大学院医学研究科内科系講座小児化学分野, 准教授 (70362796)
MINAMIKAWA Shogo  神戸大学, 医学部付属病院, 特定助教 (10772634)
Project Period (FY) 2016-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2017: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2016: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
KeywordsAlport症候群 / 次世代シークエンサー / 網羅的遺伝子解析 / 体細胞モザイク / 高い診断能力 / 修飾遺伝子 / 診断
Outline of Final Research Achievements

We established a diagnostic system that comprehensively analyze podocyte-related 45 genes by targeted sequencing using next generation sequencer (NGS). We analyzed 185 families suspected as having Alport syndrome (AS) and causative variants were identified in 147 families. As a result of large-scale analysis, it was possible to analyze the genotype-phenotype correlation of AS and we reported on the details about female patients with X-linked AS.
We also clarified that NGS analysis detects other inherited kidney diseases, AS patients with copy number variation or somatic mosaic.

Report

(3 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • Research Products

    (7 results)

All 2018 2017 2016

All Journal Article (3 results) (of which Peer Reviewed: 3 results,  Open Access: 2 results) Presentation (4 results) (of which Int'l Joint Research: 1 results)

  • [Journal Article] Detection of copy number variations by pair analysis using next-generation sequencing data in inherited kidney diseases2018

    • Author(s)
      Nagano C, Nozu K, Morisada N, Yazawa M, Ichikawa D, Numasawa K, Kourakata H, Matsumura C, Tazoe S, Tanaka R, Yamamura T, Minamikawa S, Horinouchi T, Nakanishi K, Fujimura J, Sakakibara N, Nozu Y, Ye MJ, Kaito H, Iijima K
    • Journal Title

      Clinical and Experimental Nephrology

      Volume: 印刷中 Issue: 4 Pages: 881-888

    • DOI

      10.1007/s10157-018-1534-x

    • NAID

      120006624236

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Natural History and Genotype?Phenotype Correlation in Female X-Linked Alport Syndrome2017

    • Author(s)
      Yamamura Tomohiko、Nozu Kandai、Fu Xue Jun、Nozu Yoshimi、Ye Ming Juan、Shono Akemi、Yamanouchi Satoko、Minamikawa Shogo、Morisada Naoya、Nakanishi Koichi、Shima Yuko、Yoshikawa Norishige、Ninchoji Takeshi、Morioka Ichiro、Kaito Hiroshi、Iijima Kazumoto
    • Journal Title

      Kidney Int Rep.

      Volume: 2 Issue: 5 Pages: 850-855

    • DOI

      10.1016/j.ekir.2017.04.011

    • NAID

      120006373817

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Female X-linked Alport syndrome with somatic mosaicism2016

    • Author(s)
      Yokota K, Nozu K, Minamikawa S, Yamamura T, Nakanishi K, Kaneda H, Hamada R, Nozu Y, Shono A, Ninchoji T, Morisada N, Ishimori S, Fujimura J, Horinouchi T, Kaito H, Nakanishi K, Morioka I, Taniguchi-Ikeda M, Iijima K.
    • Journal Title

      Clin Exp Nephrol.

      Volume: 印刷中 Issue: 5 Pages: 877-883

    • DOI

      10.1007/s10157-016-1352-y

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] 次世代シークエンサーを用いたAlport症候群の網羅的診断法の確立2018

    • Author(s)
      山村智彦
    • Organizer
      第121回日本小児科学会学術集会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 次世代シークエンサーを用いたAlport症候群の網羅的診断法の確立2017

    • Author(s)
      山村智彦
    • Organizer
      第60回日本腎臓学会学術集会
    • Related Report
      2017 Annual Research Report 2016 Research-status Report
  • [Presentation] Establishment of a comprehensive diagnostic method using next generation sequencer for Alport syndrome2017

    • Author(s)
      山村智彦
    • Organizer
      第52回日本小児腎臓病学会学術集会
    • Related Report
      2017 Annual Research Report 2016 Research-status Report
  • [Presentation] Establishment of a comprehensive diagnostic method using next generation sequencer for Alport syndrome2017

    • Author(s)
      山村智彦
    • Organizer
      13th Asian Congress of Pediatric Nephrology
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research

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Published: 2016-04-21   Modified: 2019-03-29  

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