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Analysis of the water splitting and oxigen evolving mechanis of Photosystem II comples using serial femto-second crystallography

Research Project

Project/Area Number 16K21181
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Structural biochemistry
Plant molecular biology/Plant physiology
Research InstitutionOkayama University

Principal Investigator

Akita Fusamichi  岡山大学, 異分野基礎科学研究所, 准教授 (50751418)

Project Period (FY) 2016-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2017: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2016: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywords光合成
Outline of Final Research Achievements

Photosystem II is a supercomplex, and catalyzes water-splitting, leading to the generation of electrons, protons and oxygen. Since no intermediate structures of the S-state has been solved, the mechanism of water-splitting is still not clear. To analyze the structures of the intermediate S-states, we prepared PSII microcrystals and collected their diffraction images using time-resolved serial femtosecond crystallography with X-ray free electron laser at SACLA. We obtained two-flashes illuminated PSII structure at 2.35 angstrom resolution. By comparing with the S1-state structure, it was revealed that a new oxygen atom was inserted into a position close to one of the oxo-bridges (O5) within Mn cluster.

Report

(3 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • Research Products

    (8 results)

All 2018 2017 2016

All Journal Article (5 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 5 results,  Open Access: 5 results,  Acknowledgement Compliant: 2 results) Presentation (3 results) (of which Invited: 2 results)

  • [Journal Article] Structured Near-Infrared Magnetic Circular Dichroism spectra of the Mn4CaO5 cluster of PS II in T. Vulcanus are dominated by Mn(IV) d-d ‘spin-flip’ transitions2018

    • Author(s)
      Morton J., Chrysina M., Craig V. S.J., Akita F., Nakajima Y., Lubitz W., Cox N., Shen J.-R., and Krausz E.
    • Journal Title

      Biochim. Biophys. Acta

      Volume: 1859 Issue: 2 Pages: 88-98

    • DOI

      10.1016/j.bbabio.2017.10.004

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Fourier Transform Infrared Analysis of the S-State Cycle of Water Oxidation in the Microcrystals of Photosystem II2018

    • Author(s)
      Kato Yuki、Akita Fusamichi、Nakajima Yoshiki、Suga Michihiro、Umena Yasufumi、Shen Jian-Ren、Noguchi Takumi
    • Journal Title

      The Journal of Physical Chemistry Letters

      Volume: 9 Issue: 9 Pages: 2121-2126

    • DOI

      10.1021/acs.jpclett.8b00638

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structural basis for the photosynthetic water-splitting/oxygen-evolving reaction2017

    • Author(s)
      秋田 総理、菅 倫寛、沈 建仁
    • Journal Title

      生化学

      Volume: 89 Issue: 5 Pages: 699-709

    • DOI

      10.14952/SEIKAGAKU.2017.890699

    • NAID

      40021377402

    • ISSN
      0037-1017
    • Year and Date
      2017-10-25
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL.2017

    • Author(s)
      Suga, M.†, Akita, F.†, Sugahara, M.†, Kubo, M.†, Nakajima, Y.† et al. (†equal contribution)(38人中1番目)
    • Journal Title

      Nature

      Volume: 543 Issue: 7643 Pages: 131-135

    • DOI

      10.1038/nature21400

    • NAID

      120006344935

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Large-scale QM/MM calculations of the CaMn4O5 cluster in the S3 state of the oxygen evolving complex of photosystem II. Comparison between water-inserted and no water-inserted structures.2017

    • Author(s)
      Shoji M, Isobe H, Nakajima T, Shigeta Y, Suga M, Akita F, Shen JR and *Yamazaki K.
    • Journal Title

      Faraday Discussions

      Volume: 198 Pages: 83-106

    • DOI

      10.1039/c6fd00230g

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Presentation] X線自由電子レーザーによる光化学系II複合体の酸素発生機構の解明2018

    • Author(s)
      秋田総理
    • Organizer
      第10回文部科学省「最先端の光の創成を目指したネットワーク研究拠点プログラム シンポジウム
    • Related Report
      2017 Annual Research Report
  • [Presentation] X線自由電子レーザーを用いた光化学系II水分解反応の機構解明2017

    • Author(s)
      秋田総理
    • Organizer
      第8回日本光合成学会年会及びシンポジウム
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Structural analysis of photosystem II to reveal the mechanism of light-induced water-splitting2016

    • Author(s)
      秋田総理、菅倫寛、山下恵太郎、上野剛、村上博則、中島芳樹、梅名泰史、平田邦夫、久保稔、長谷川和也、山本雅貴、吾郷日出夫、沈建仁
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場(茨城)
    • Year and Date
      2016-11-25
    • Related Report
      2016 Research-status Report
    • Invited

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Published: 2016-04-21   Modified: 2019-03-29  

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