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Thermostable protein with denaturation temperature (Td) of 150 oC will be produced by substitution of ionic residues considering of flexibility in the water

Research Project

Project/Area Number 16K21618
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Applied biochemistry
Biophysics
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

Yoshinori Matsuura  国立研究開発法人理化学研究所, 放射光科学研究センター, リサーチアソシエイト (50513462)

Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2018: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2017: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2016: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywords蛋白質工学 / 蛋白質の熱安定性 / 静電的相互作用 / バイオテクノロジー / 超好熱菌 / DSC / 蛋白質の安定化 / 静電相互作用 / 蛋白質
Outline of Final Research Achievements

The goal was to see if one can achieve the same stability as for a CutA1 from hyperthermophile Pyrococcus horikoshii that has the denaturation temperature (Td) near 150 oC. The hydrophobic mutant of EcCutA1 (Ec0VV) with Td of 113.2 oC was used as a template for mutations. The highest stability of multiple mutants was a mutant substituted by 9 charged residues that had Td of 142.2 oC. To evaluate the energy of ion-ion interactions of mutant proteins, we used the structural ensemble obtained by molecular dynamics (MD) simulation at 300K. The Td of ionic mutants linearly increases with the increments of the computed energy of ion-ion interactions for ionic mutant proteins even up to the temperatures near 140 oC, suggesting that ion-ion interactions cumulatively contribute to the stabilization of a protein at high temperatures.

Academic Significance and Societal Importance of the Research Achievements

蛋白質は生体を構成する最も重要な成分の一つであるため、熱安定性向上を意図した蛋白質改変は、基礎研究・応用研究両方にとって有用である。本研究では、大腸菌由来CutA1蛋白質に、荷電性残基を変異導入することによって変性温度150℃の超安定蛋白質を再現しようと試みた。その際、水溶液中における荷電性残基の挙動を検証するために、分子動力学(MD:Molecular Dynamics)シミュレーションを用いた。その結果、蛋白質の熱安定性における水溶液中での荷電性残基間の静電相互作用の重要性が示唆され、150℃に迫る変性温度を持つ蛋白質を再現することが出来た。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (5 results)

All 2018 2017 2016

All Journal Article (2 results) (of which Peer Reviewed: 2 results,  Open Access: 1 results) Presentation (3 results)

  • [Journal Article] Strategy for Stabilization of CutA1 proteins due to ion-ion interactions at temperatures of over 100 °C2018

    • Author(s)
      Y. Matsuura, M. Takehira, G. I. Makhatadze, Y. Joti, H. Naitow, N. Kunishima, and K. Yutani
    • Journal Title

      Biochemistry

      Volume: 57 Issue: 18 Pages: 2649-2656

    • DOI

      10.1021/acs.biochem.8b00103

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ion-ion interactions in the denatured state contribute to the stabilization of CutA1 proteins2018

    • Author(s)
      K. Yutani, Y. Matsuura, H. Naitow, and Y. Joti
    • Journal Title

      Scientific Reports

      Volume: 8 Issue: 1 Pages: 7613-7613

    • DOI

      10.1038/s41598-018-25825-7

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] 荷電性残基の挙動をMD simulationにより評価することで明らかになった蛋白質の熱安定化に果たす静電相互作用の役割2017

    • Author(s)
      松浦祥悟、竹平 美千代、城地 保昌、内藤 久志、小野 直子、国島 直樹、油谷 克英
    • Organizer
      第17回日本蛋白質科学会年会
    • Related Report
      2017 Research-status Report
  • [Presentation] 蛋白質の変性状態における荷電性残基の特徴: 高温でのMD simulation2017

    • Author(s)
      油谷 克英、松浦祥悟、内藤 久志、城地 保昌
    • Organizer
      第17回日本蛋白質科学会年会
    • Related Report
      2017 Research-status Report
  • [Presentation] 網羅的な荷電性残基変異型の安定性変化のデータから明らかになった高温での熱安定化戦略2016

    • Author(s)
      松浦 祥悟、竹平 美千代、城地保昌、小野直子、国島 直樹、油谷 克英
    • Organizer
      第16回 日本蛋白質科学会年会
    • Place of Presentation
      福岡国際会議場 (福岡県福岡市)
    • Related Report
      2016 Research-status Report

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Published: 2016-04-21   Modified: 2020-03-30  

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