Mechanisms for cancer development based on virus and human genome interaction
Project/Area Number |
16KT0112
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Research Category |
Grant-in-Aid for Scientific Research (B)
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Allocation Type | Multi-year Fund |
Section | 特設分野 |
Research Field |
Complex Systems Disease Theory
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Research Institution | Nagasaki University |
Principal Investigator |
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Project Period (FY) |
2016-07-19 – 2020-03-31
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Project Status |
Completed (Fiscal Year 2019)
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Budget Amount *help |
¥18,460,000 (Direct Cost: ¥14,200,000、Indirect Cost: ¥4,260,000)
Fiscal Year 2018: ¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2017: ¥9,100,000 (Direct Cost: ¥7,000,000、Indirect Cost: ¥2,100,000)
Fiscal Year 2016: ¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
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Keywords | ヒトパピローマウイルス / ウイルスゲノム / 子宮頸がん / 変異 / コピー数 / 長期フォローアップ / 予後予測因子 / 予測因子 / HPVウイルス / HPV型 / ヒトゲノム / 相互作用 / ヒトパピロマウイルス / 塩基配列決定 / 型判定 / 予後予測 / Huma Papilloma Virus / Capture / L1 / シーケンス / 濃縮 / ウイルス |
Outline of Final Research Achievements |
We sequenced whole human papilloma virus genome DNA (HPV-WGS) derived from human cervical pap smear test samples. Type classification by HPV-WGS and amplicon typing by L1 accord basically, but HPV not found by amplicon typing sometimes identified by HPV-WGS and mutations are frequently found by HPV-WGS. Virus amount on papa smear is shown to have large variation. Mutations in human gene, PIK3CA,KRAS,CDK N2A,EGFR,TP53,NOTCH1 and MYC, are hardly found, and virus integrations sites are variable and are not common sites. We are investigating present cervical conditions to stratify patients, progressed or naturally cured, and we will search to find prediction marker for cervical disease prognosis.
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Academic Significance and Societal Importance of the Research Achievements |
本研究で,子宮検診時に得られる子宮頸部拭い液中のヒトパピローマウイルスの型や量と長期的な子宮頸部病変の予後との関連が明らかにできると期待している。本研究は,経過の報告となったが,10余年の経過とHPV全ゲノム情報との相関解析は,検診時にどこまで検査が必要かといった行政施策に生かせる情報である。 HPV全ゲノム情報でのウイルスの系統分類は,ウイルスL1領域のみを用いた簡易型の分類とほとんど同一で,現在の型判定法は費用対効果の点からは間違っていない。ただし,HPV全ゲノム塩基配列には変異も認められ,これら変異の病状進展に関してのインパクトを明らかにすることが今後の課題である(現在進行中研究)。
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Report
(5 results)
Research Products
(91 results)
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[Journal Article] Possible mitochondrial dysfunction in a patient with deafness, dystonia, and cerebral hypomyelination (DDCH) due to BCAP31 Mutation.2020
Author(s)
Shimizu K, Oba D, Nambu R, Tanaka M, Oguma E, Murayama K, Ohtake A, Yoshiura KI, Ohashi H.
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Journal Title
Molecular Genetics and Genomic Medicine
Volume: 17
Issue: 3
DOI
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[Journal Article] Nonsense mutation in CFAP43 causes normal-pressure hydrocephalus with ciliary abnormalities2019
Author(s)
Morimoto Y, Yoshida S, Kinoshita A, Satoh C, Mishima H, Yamaguchi N, Matsuda K, Sakaguchi M, Tanaka T, Komohara Y, Imamura A, Ozawa H, Nakashima M, Kurotaki N, Kishino T, Yoshiura K, Ono S
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Journal Title
Neurology
Volume: 92
Issue: 20
DOI
NAID
Related Report
Peer Reviewed / Open Access
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[Journal Article] Identification of a novel CCDC22 mutation in a patient with severe Epstein?Barr virus-associated hemophagocytic lymphohistiocytosis and aggressive natural killer cell leukemia2019
Author(s)
Yamashita Y, Nishikawa A, Iwahashi Y, Fujimoto M, Sasaki I, Mishima H, Kinoshita A, Hemmi H, Kanazawa N, Ohshima K, Imadome KI, Murata SI、Yoshiura KI, Kaisho T, Sonoki T, Tamura S
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Journal Title
International Journal of Hematology
Volume: 印刷中
Issue: 6
Pages: 744-750
DOI
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[Journal Article] Cystic biliary atresia with paucity of bile ducts and gene mutation in KDM6A: a case report.2019
Author(s)
Masui D, Fukahori S, Mizuochi T, Watanabe Y, Fukui K, Ishii S, Saikusa N, Hashizume N, Higashidate N, Sakamoto S, Takato A, Yoshiura KI, Tanaka Y, Yagi M.
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Journal Title
Surgical Case Reports
Volume: 5(1)
Issue: 1
Pages: 132-132
DOI
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Peer Reviewed / Open Access
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[Journal Article] Genome analysis of myelodysplastic syndromes among atomic bomb survivors in Nagasaki2019
Author(s)
Taguchi M, Mishima H, Shiozawa Y, Hayashida C, Kinoshita A, Nannya Y, Makishima H, Horai M, Matsuo M, Sato S, Itonaga H, Kato T, Taniguchi H, Imanishi D, Imaizumi Y, Hata T, Takenaka M, Moriuchi Y, Shiraishi Y, Miyano S, Ogawa S, Yoshiura K-i, Miyazaki Y
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Journal Title
Haematologica
Volume: 105
Issue: 2
Pages: 358-365
DOI
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Peer Reviewed / Open Access / Int'l Joint Research
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[Journal Article] Identification of a variant associated with early-onset diabetes in the intron of the insulin gene with exome sequencing2018
Author(s)
Matsuno, S., Furuta, H., Kosaka, K., Doi, A., Yorifuji, T., Fukuda, T., Senmaru, T., Uraki, S., Matsutani, N., Furuta, M., Mishima, H., Iwakura, H., Nishi, M., Yoshiura, K., Fukui, M. and Akamizu, T.
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Journal Title
J Diabetes Investig
Volume: Epub ahead of print
Issue: 4
Pages: 947-950
DOI
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Peer Reviewed / Open Access
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[Journal Article] A Hot-spot Mutation in CDC42 (p.Tyr64Cys) and Novel Phenotypes in a Third Patient with Takenouchi-Kosaki Syndrome.2018
Author(s)
Motokawa M, Watanabe S, Nakatomi A, Kondoh T, Matsumoto T, Morifuji K, Sawada H, Nishimura T, Nunoi H, Yoshiura KI, Moriuchi H, Dateki S.
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Journal Title
J Hum Genet.
Volume: 63
Issue: 3
Pages: 387-390
DOI
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[Journal Article] A novel heterozygous GLI2 mutation in a patient with congenital urethral stricture and renal hypoplasia/dysplasia leading to end-stage renal failure.2018
Author(s)
Shirakawa T, Nakashima Y, Watanabe S, Harada S, Kinoshita M, Kihara T, Hamasaki Y, Shishido S, Yoshiura KI, Moriuchi H, Dateki S.
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Journal Title
CEN Case Rep.
Volume: 7
Issue: 1
Pages: 94-97
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[Journal Article] Clonal dynamics in a case of acute monoblastic leukemia that later developed myeloproliferative neoplasm.2018
Author(s)
Sato S, Itonaga H, Taguchi M, Sawayama Y, Imanishi D, Tsushima H, Hata T, Moriuchi Y, Mishima H, Kinoshita A, Yoshiura KI, Miyazaki Y.
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Journal Title
Int J Hematol.
Volume: -
Issue: 2
Pages: 213-217
DOI
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Peer Reviewed
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[Journal Article] Patients with SATB2-associated syndrome exhibiting multiple odontomas.2018
Author(s)
Kikuiri T, Mishima H, Imura H, Suzuki S, Matsuzawa Y, Nakamura T, Fukumoto S, Yoshimura Y, Watanabe S, Kinoshita A, Yamada T, Shindoh M, Sugita Y, Maeda H, Yawaka Y, Mikoya T, Natsume N, Yoshiura KI.
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Journal Title
Am J Med Genet A.
Volume: 176
Issue: 12
Pages: 2614-2622
DOI
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Peer Reviewed
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[Journal Article] Comprehensive methylation analysis of imprinting-associated differentially methylated regions in colorectal cancer.2018
Author(s)
Hidaka H, Higashimoto K, Aoki S, Mishima H, Hayashida C, Maeda T, Koga Y, Yatsuki H, Joh K, Noshiro H, Iwakiri R, Kawaguchi A, Yoshiura KI, Fujimoto K, Soejima H.
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Journal Title
Clin Epigenetics
Volume: 10
Issue: 1
Pages: 150-150
DOI
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Peer Reviewed / Open Access
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[Journal Article] Chromosomal analysis of myelodysplastic syndromes among atomic bomb survivors in Nagasaki.2018
Author(s)
Horai M, Satoh S, Matsuo M, Iwanaga M, Horio K, Jo T, Takasaki Y, Kawaguchi Y, Tsushima H, Yoshida S, Taguchi M, Itonaga H, Sawayama Y, Taguchi J, Imaizumi Y, Hata T, Moriuchi Y, Haase D, Yoshiura KI, Miyazaki Y.
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Journal Title
Br J Haematol.
Volume: 180
Issue: 3
Pages: 381-390
DOI
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Peer Reviewed / Int'l Joint Research
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[Journal Article] Whole-exome sequencing and gene-based rare variant association tests suggest that PLA2G4E might be a risk gene for panic disorder. Transl Psychiatry.2018
Author(s)
Morimoto Y, Shimada-Sugimoto M, Otowa T, Yoshida S, Kinoshita A, Mishima H, Yamaguchi N, Mori T, Imamura A, Ozawa H, Kurotaki N, Ziegler C, Domschke K, Deckert J, Umekage T, Tochigi M, Kaiya H, Okazaki Y, Tokunaga K, Sasaki T, Yoshiura KI, Ono S.
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Journal Title
Transl Psychiatry
Volume: 8
Issue: 1
Pages: 41-41
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[Journal Article] Detection of de novo single nucleotide variants in offspring of atomic-bomb survivors close to the hypocenter by whole-genome sequencing.2018
Author(s)
Horai M, Mishima H, Hayashida C, Kinoshita A, Nakane Y, Matsuo T, Tsuruda K, Yanagihara K, Sato S, Imanishi D, Imaizumi Y, Hata T, Miyazaki Y, Yoshiura KI.
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Journal Title
J Hum Genet.
Volume: 63
Issue: 3
Pages: 357-363
DOI
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Peer Reviewed
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[Journal Article] MicroRNA-204-3p inhibits lipopolysaccharide-induced cytokines in familial Mediterranean fever via the phosphoinositide 3-kinase γ pathway2017
Author(s)
Koga Tomohiro,Migita Kiyoshi,Sato Tomohito,Sato Shuntaro,Umeda Masataka,Nonaka Fumiaki,Fukui Shoichi,Kawashiri Shin-ya,Iwamoto Naoki,Ichinose Kunihiro,Tamai Mami,Nakamura Hideki,Origuchi Tomoki,Ueki Yukitaka,Masumoto Junya,Agematsu Kazunaga,Yachie Akihiro,Yoshiura Koh-ichiro,Eguchi Katsumi,Kawakami Atsushi
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Journal Title
Rheumatology
Volume: 57
Issue: 4
Pages: 718-726
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[Journal Article] Analysis of clinical symptoms and ABCC6 mutations in 76 Japanese patients with pseudoxanthoma elasticum.2017
Author(s)
Iwanaga A, Okubo Y, Yozaki M, Koike Y, Kuwatsuka Y, Tomimura S, Yamamoto Y, Tamura H, Ikeda S, Maemura K, Tsuiki E, Kitaoka T, Endo Y, Mishima H, Yoshiura KI, Ogi T, Tanizaki H, Wataya-Kaneda M, Hattori T, Utani A.
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Journal Title
Journal of Dermatology
Volume: 印刷中
Issue: 6
Pages: 644-650
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[Journal Article] Progressive Atrial Conduction Defects Associated With Bone Malformation Caused by a Connexin-45 Mutation.2017
Author(s)
Seki A, Ishikawa T, Daumy X, Mishima H, Barc J, Sasaki R, Nishii K, Saito K, Urano M, Ohno S, Otsuki S, Kimoto H, Baruteau AE, Thollet A, Fouchard S, Bonnaud S, Parent P, Shibata Y, Perrin JP, Le Marec H, Hagiwara N, Mercier S, Horie M, Probst V, Yoshiura KI, Redon R, Schott JJ, Makita N.
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Journal Title
J Am Coll Cardiol.
Volume: 70
Issue: 3
Pages: 358-370
DOI
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Peer Reviewed / Int'l Joint Research
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[Journal Article] Effects of HLA-DRB1 alleles on susceptibility and clinical manifestations in Japanese patients with adult onset Still's disease.2017
Author(s)
Asano T, Furukawa H, Sato S, Yashiro M, Kobayashi H, Watanabe H, Suzuki E, Ito T, Ubara Y, Kobayashi D, Iwanaga N, Izumi Y, Fujikawa K, Yamasaki S, Nakamura T, Koga T, Shimizu T, Umeda M, Nonaka F, Yasunami M, Ueki Y, Eguchi K, Tsuchiya N, Tohma S, Yoshiura KI, Ohira H, Kawakami A, Migita K.
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Journal Title
Arthritis Res Ther.
Volume: 19
Issue: 1
Pages: 199-199
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[Journal Article] Postmortem genetic analysis of sudden unexpected death in infancy: neonatal genetic screening may enable the prevention of sudden infant death.2017
Author(s)
Oshima Y, Yamamoto T, Ishikawa T, Mishima H, Matsusue A, Umehara T, Murase T, Abe Y, Kubo SI, Yoshiura KI, Makita N, Ikematsu K.
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Journal Title
J Hum Genet.
Volume: 62
Issue: 11
Pages: 989-995
DOI
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[Journal Article] SMCHD1 mutations associated with a rare muscular dystrophy can also cause isolated arhinia and Bosma arhinia microphthalmia syndrome.2017
Author(s)
Shaw ND, Brand H, Kupchinsky ZA, Sato D, Okamoto N, Jacobsen C, Macarthur D, Moore SA, Yoshiura KI, Gusella JF, Marsh JA, Graham JM Jr, Lin AE, Katsanis N, Jones PL, Crowley WF Jr, Davis EE, FitzPatrick DR, Talkowski ME. その他
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Journal Title
Nature Genetics
Volume: 49(2)
Issue: 2
Pages: 238-248
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[Journal Article] De novo mutations in SMCHD1 abrogate nasal development.2017
Author(s)
Gordon CT, Xue S, Yigit G, Filali H, Chen K, Rosin N, Yoshiura K-i, Oufadem M, Beck TJ, McGowan R, Teo ASM, Cunningham ML, Sefiani A, Kayserili H, Murphy JM, Chatdokmaiprai C, Hillmer AM, Wattanasirichaigoon D, Lyonnet S, Magdinier F, Javed A, Blewitt ME, Amiel J, Wollnik B, Reversade B. その他
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Journal Title
Nature Genetics
Volume: 49(2)
Issue: 2
Pages: 249-255
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[Journal Article] A significant association between rs8067378 at 17q12 and invasive cervical cancer originally identified by a genome-wide association study in Han Chinese is replicated in a Japanese population.2016
Author(s)
Miura K, Mishima H, Yasunami M, Kaneuchi M, Kitajima M, Abe S, Higashijima A, Fuchi N, Miura S, Yoshiura KI, Masuzaki H.
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Journal Title
J Hum Genet.
Volume: 61(9)
Issue: 9
Pages: 793-796
DOI
NAID
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[Journal Article] Clinical and histological findings of autosomal dominant renal-limited disease with LMX1B mutation.2016
Author(s)
Konomoto T, Imamura H, Orita M, Tanaka E, Moritake H, Sato Y, Fujimoto S, Harita Y, Hisano S, Yoshiura KI, Nunoi H.
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Journal Title
Nephrology (Carlton)
Volume: 21(9)
Issue: 9
Pages: 765-773
DOI
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[Journal Article] Expression of Somatostatin Receptor Type 2A and PTEN in Neuroendocrine Neoplasms Is Associated with Tumor Grade but Not with Site of Origin.2016
Author(s)
Wada H, Matsuda K, Akazawa Y, Yamaguchi Y, Miura S, Ueki N, Kinoshita A, Yoshiura K, Kondo H, Ito M, Nagayasu T, Nakashima M.
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Journal Title
Endocr Pathol.
Volume: 27(3)
Issue: 3
Pages: 179-187
DOI
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Peer Reviewed / Open Access / Int'l Joint Research
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[Presentation] Analysis of mice varying a novel mutation in a proteasome subunit gene identified in an autoinflammatory disease -Proteasome-associated autoinflammation and immunodeficiency disease (PRAID).2018
Author(s)
Toshiya Ozasa, Hiroaki Hemmi, Akira Kinoshita, Takashi Kato, Takashi Orimo, Izumi Sasaki, Yuri Fukuda-Ohta, Noriko Kinjo, Koh-Ichiro Yoshiura, Tsunehiro Mizushima, Nobuo Kanazawa, Tsuneyasu Kaisho.
Organizer
第47回日本免疫学会学術集会
Related Report
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[Presentation] Impaired development of dendritic cells in proteasome subunit mutant mice.2018
Author(s)
Hiroaki Hemmi, Toshiya Ozasa, Akira Kinoshita, Takashi Kato, Takashi Orimo, Izumi Sasaki, Yuri Fukuda-Ohta, Noriko Kinjo, Koh-Ichiro Yoshiura, Tsunehiro Mizushima, Nobuo Kanazawa, Tsuneyasu Kaisho.
Organizer
第47回日本免疫学会学術集会
Related Report
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[Presentation] De novo gain-of-function mutations in the epigenetic regulator SMCHD1 cause Bosma arhinia microphthalmia syndrome.2017
Author(s)
Gordon C. T., Xue S., Yigit G., Filali H., Chen K., Rosin N., Yoshiura K., Oufadem M., Beck T., Dion C., Sefiani A., Kayserili H., Murphy J., Chatdokmaiprai C., Hillmer A., Wattanasirichaigoon D., Lyonnet S., Magdinier F., Javed A., Blewitt M., Amiel J., Wollnik B., Reversade B.
Organizer
European Human Genetics Conference
Related Report
Int'l Joint Research
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[Presentation] Identification of I287S homozygous mutation in the MLX gene in an infant with non-alcoholic steatohepatitis: A case report.2017
Author(s)
Yoriko Watanabe, Satoshi Watanabe, Chisei Sato, Sachiko Ogasawara, Jun Akiba, Masayoshi Kage, Hirohisa Yano, Kaori Fukui, Tatsuki Mizuochi, Shoji Yano, Kiyoshi Hayasaka, Yushiro Yamashita, Takumi Kawaguchi, Takuji Torimura, Koh-ichiro Yoshiura.
Organizer
American Society of Human Genetics Annual Meeting
Related Report
Int'l Joint Research
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[Presentation] De novo mutations in the C-terminal region of ITPR1 cause aniridia, cerebellar ataxia and intellectual disability, Gillespie syndrome.2017
Author(s)
Shinji Saitoh, Akira Kinoshita, Kana Hosoki, Hiroyuki Mishima, Kiyotaka Tomiwa, Naoko Ishihara, Yutaka Negishi, Naoko Asahina, Hideaki Shiraishi, Koh-ichiro Yoshiura.
Organizer
日本人類遺伝学会 第62回大会
Related Report
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[Presentation] Targeted deep sequencing reveals novel mutations in Japanese long QT syndrome patients.2017
Author(s)
Watanabe R, Ohno S, Aiba T, Ishikawa T, Nakano Y, Mishima H, Minamino N, Makiyama T, Tanaka Y, Murata H, Hayashi M, Iwasaki Y, Watanabe A, Tachibana M, Morita H, Miyamoto Y, Yoshiura K, sunoda T, Watanabe H, Kurabayashi M, Nogami A, Kihara Y, Makita N, Shimuzu W, Horie M, Tanaka T.
Organizer
日本人類遺伝学会 第62回大会
Related Report
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[Presentation] Identification of I285S homozygous mutation on the MLX gene in an infant with non-alcoholic steatohepatitis.2017
Author(s)
Yoriko Watanabe, Satoshi Watanabe, Chisei Satoh, Sachiko Ogasawara, Jun Akiba, Masayoshi Kage, Hirohisa Yano, Kaori Fukui, Tatsuki Mizuochi, Shoji Yano, Kiyoshi Hayasaka, Yushiro Yamashita, Takumi Kawaguchi, Takuji Torimura, Koh-ichiro Yoshiura.
Organizer
日本人類遺伝学会 第62回大会
Related Report
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