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Topological and computational method for dynamical systemsdor the global structure of biological sciences

Research Project

Project/Area Number 16KT0138
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section特設分野
Research Field Mathematical Sciences in Search of New Cooperation
Research InstitutionRyukoku University

Principal Investigator

Oka Hiroe  龍谷大学, 理工学部, 教授 (20215221)

Project Period (FY) 2016-07-19 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2018: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2017: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2016: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Keywords力学系 / 制御ネットワーク / 大域的構造 / モース分解 / Conley index / 時系列解析 / 不安定ダイナミクス / switching system / ネットワーク結合系 / 位相的計算理論
Outline of Final Research Achievements

(A) Topological and computational method for dynamical systems is a computer-assisted method developed by the people including the author,in order to analyze the global structures of the dynamical systems and its bifurcations. From time series data obtained by complex network systems like gene regulatory networks, the author formulate the theory for reconstructing the global structure of the systems like Morsedecomposition and also did some computation for Mirsky’s model for circadian rhythms.
(B) In this project we apply this method to the switching systems which is one of the coupled neural regulatory networks of biomolecules, and give the mathematical formulation.
(C) We compute the persistence diagram form the time series data of the vector field of 3-dimensional turbulence, and obtain some characteristic structure.

Academic Significance and Societal Importance of the Research Achievements

研究代表者はこれまで, 分岐理論を用いた解析的アプローチやConley 指数などの力学系の位相不変量を用いたトポロジー的アプローチによる研究を行い, ホモロジー計算などの位相的方法に精度保証付き数値計算を組み合わせ、数学的に厳密で汎用性のあるアルゴリズムの構築を試みてきた.この方法をswitchig systemsと言われる生体分子の制御ネットワーク結合系に適用し、遺伝子ネットワークなどの生物学的研究に新しい方法を与えることができる。また, この手法は, 力学系の枠組みの新しい視点を構築し, 数学的な新規性についても寄与している.

Report

(5 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Research-status Report
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (22 results)

All 2020 2019 2018 2017 2016 Other

All Int'l Joint Research (9 results) Journal Article (1 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 1 results,  Acknowledgement Compliant: 1 results) Presentation (9 results) (of which Int'l Joint Research: 5 results,  Invited: 5 results) Remarks (3 results)

  • [Int'l Joint Research] Rutgers University/Montana state University(米国)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] 國立交通大學(その他の国・地域(台湾))

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] Rutgers University/Montana State University(米国)

    • Related Report
      2018 Research-status Report
  • [Int'l Joint Research] Rutgers University/Montana State University(米国)

    • Related Report
      2017 Research-status Report
  • [Int'l Joint Research] Free University of Berlin(Germany)

    • Related Report
      2017 Research-status Report
  • [Int'l Joint Research] National Chiao-Tung University(Taiwan)

    • Related Report
      2017 Research-status Report
  • [Int'l Joint Research] Rutgers University/Montana State University(米国)

    • Related Report
      2016 Research-status Report
  • [Int'l Joint Research] Free University of Berlin(Germany)

    • Related Report
      2016 Research-status Report
  • [Int'l Joint Research] University of Sao Paolo,Sao Carlos(Brazil)

    • Related Report
      2016 Research-status Report
  • [Journal Article] Global dynamics for steep nonlinearities in two dimensions2017

    • Author(s)
      Tomas Gedeon, Shaun Harker, Hiroshi Kokubu, Konstantin Mischaikow, Hiroe Oka
    • Journal Title

      Physica D

      Volume: 339 Pages: 18-38

    • DOI

      10.1016/j.physd.2016.08.006

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Presentation] Stability of circular Persistence2020

    • Author(s)
      Hiroe Oka
    • Organizer
      力学系冬の研究集会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Morse decomposition of switching systems2019

    • Author(s)
      Hiroe Oka
    • Organizer
      9th International Congress on Industrial and Applied Mathematics (ICIAM 2019)
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Morse decompositions of the switching system and its smooth perturbation2019

    • Author(s)
      Hiroe Oka
    • Organizer
      武蔵野大学連携シンポジウム
    • Related Report
      2018 Research-status Report
  • [Presentation] A remark on Conley indices over base2018

    • Author(s)
      Hiroe Oka
    • Organizer
      Algebraic Topology in Dynamics and Data 2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Conley Indices for continuous and discrete time dynamical systems2018

    • Author(s)
      Hiroe Oka
    • Organizer
      2018日本数学会年会、応用数学分科会
    • Related Report
      2017 Research-status Report
  • [Presentation] Morse decomposition of dynamical systems from time-series data2017

    • Author(s)
      Hiroshi Kokubu
    • Organizer
      International Conference "Mathematical Analysis on Nonlinear PDEs"
    • Place of Presentation
      Tohoku University, Sendai
    • Year and Date
      2017-01-06
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Morse decomposition of regulatory networks via determining nodes2017

    • Author(s)
      Hiroe Oka
    • Organizer
      University of Aukland
    • Related Report
      2017 Research-status Report
  • [Presentation] Morse decomposition of regulatory networks via determining nodes2017

    • Author(s)
      Hiroe Oka
    • Organizer
      MCA2017
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Computer assisted methods for detecting global structure of dynamics2016

    • Author(s)
      Hiroshi Kokubu(連携研究者)
    • Organizer
      SCAN2016
    • Place of Presentation
      Uppsala Univ. Uppsala, Sweden
    • Year and Date
      2016-09-26
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Remarks]

    • URL

      https://whale.math.ryukoku.ac.jp/~oka/

    • Related Report
      2019 Annual Research Report
  • [Remarks]

    • URL

      https://www.math.ryukoku.ac.jp/~oka/

    • Related Report
      2018 Research-status Report
  • [Remarks] Welcome to Hiroe's Home Page!

    • URL

      https://www.math.ryukoku.ac.jp/~oka/

    • Related Report
      2017 Research-status Report

URL: 

Published: 2016-07-20   Modified: 2023-03-08  

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