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Basic and applied genomics of enterohemorrhagic Escherichia coli and related enteropathogens

Research Project

Project/Area Number 17019058
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionUniversity of Miyazaki

Principal Investigator

HAYASHI Tetsuya  University of Miyazaki, フロンティア科学実験総合センター, センター長 (10173014)

Co-Investigator(Kenkyū-buntansha) OGURA Yoshitoshi  宮崎大学, フロンティア科学実験総合センター, 助教 (40363585)
OOKA Tadasuke  宮崎大学, 医学部, 助教 (50363594)
TOBE Toru  大阪大学, 医学系研究科, 准教授 (70207596)
IIDA Tetsuya  大阪大学, 微生物病研究所, 教授 (90221746)
KUWAHARA Tomomi  徳島大学, ヘルスバイオサイエンス研究部, 准教授 (60263810)
Project Period (FY) 2005 – 2009
Project Status Completed (Fiscal Year 2009)
Budget Amount *help
¥151,800,000 (Direct Cost: ¥151,800,000)
Fiscal Year 2009: ¥30,900,000 (Direct Cost: ¥30,900,000)
Fiscal Year 2008: ¥30,800,000 (Direct Cost: ¥30,800,000)
Fiscal Year 2007: ¥30,800,000 (Direct Cost: ¥30,800,000)
Fiscal Year 2006: ¥31,100,000 (Direct Cost: ¥31,100,000)
Fiscal Year 2005: ¥28,200,000 (Direct Cost: ¥28,200,000)
Keywords病原性大腸菌 / 腸内常在菌 / 多様性 / 病原性 / 腸炎ビブリオ / 疫学ツールの開発 / 腸内常在菌叢 / III型分泌系 / 発現制御 / O抗原合成遺伝子 / 常在菌 / バクテリオファージ
Research Abstract

By performing a series of genome sequencing and functional analyses of enterohemorrhagic Ecsherichia coli (EHEC) and related enteropathogens. we succeeded in developing a rapid O157 EHEC strain typing system, obtaining the complete genome sequences of three major non-O157 EHECs, and improving our understanding of functions and evolution mechanisms of type III secretion mechanisms and other virulence systems of these pathogens. In addition, we succeeded in clarifying the genetic and functional differences of adult and infant gut microbiota by comparative metagenomic analysis and obtaining the complete genome sequences of 3 bacterial species (4 strains, including an unculturable bacterium) residing in intestine.

Report

(6 results)
  • 2009 Annual Research Report   Final Research Report ( PDF )
  • 2008 Annual Research Report
  • 2007 Annual Research Report
  • 2006 Annual Research Report
  • 2005 Annual Research Report
  • Research Products

    (216 results)

All 2010 2009 2008 2007 2006 2005 Other

All Journal Article (104 results) (of which Peer Reviewed: 44 results) Presentation (98 results) Book (10 results) Remarks (2 results) Patent(Industrial Property Rights) (2 results)

  • [Journal Article] Complete genome sequence of the wild-type commensal Escherichia coli strain SE15, belonging to phylogenetic group B2.2010

    • Author(s)
      H.Toh, et al.
    • Journal Title

      J.Bacteriol. 192

      Pages: 1165-1166

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli2009

    • Author(s)
      Ogura Y., Ooka T., (他10名), Tobe T., Hattori M., Hayashi T.
    • Journal Title

      Proc Natl Acad Sci USA 106

      Pages: 17939-44

    • Related Report
      2009 Final Research Report
  • [Journal Article] Inference of the impact of insertion sequence (IS)elements on bacterial genome diversification through analysis of small-size structural polymorphisms in Escherichia coli O157 genomes2009

    • Author(s)
      Ooka T., Ogura Y., (他5名), Hayashi T.
    • Journal Title

      Genome Res 19

      Pages: 1809-16

    • Related Report
      2009 Final Research Report
  • [Journal Article] Development of a multiplex PCR-based rapid typing method for enterohemorrhagic Escherichia coli O157 strains2009

    • Author(s)
      Ooka T., (他4名), Ogura Y., (他6名), Hayashi T.
    • Journal Title

      J Clin Microbiol 47

      Pages: 2888-94

    • Related Report
      2009 Final Research Report
  • [Journal Article] The defective prophage pool of Escherichia coli O157:prophage-prophage interactions potentiate horizontal transfer of virulence determinants2009

    • Author(s)
      Asagulghani Md, Ogura Y., Ooka T., (他4名), Hayashi T.
    • Journal Title

      PLoS Pathog 5

    • Related Report
      2009 Final Research Report
  • [Journal Article] Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348/692009

    • Author(s)
      Iguchi A., Thomson N.R., Ogura Y., Saunders D., Ooka T., (他9名), Hayashi, T., (他2名)
    • Journal Title

      J. Bacteriol 191(1)

      Pages: 347-54

    • Related Report
      2009 Final Research Report
  • [Journal Article] A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis2009

    • Author(s)
      Leopold S.R., (他5名), Ogura Y., Iguchi A., Hayashi T., (他6名)
    • Journal Title

      Proc Natl Acad Sci USA 106

      Pages: 8713-18

    • Related Report
      2009 Final Research Report
  • [Journal Article] Enterohemorrhagic Escherichia coli effector EspL2 induces actin microfilament aggregation through annexin 2 activation2009

    • Author(s)
      Miyahara, A., Nakanishi, N., Ooka, T., Hayashi, T., Sugimoto, N., Tobe, T.
    • Journal Title

      Cell Microbiol 11

      Pages: 337-50

    • Related Report
      2009 Final Research Report
  • [Journal Article] Identification of the site-specific DNA invertase responsible for the phase variation of SusC/SusD family outer membrane proteins in Bacteroides fragilis2009

    • Author(s)
      Nakayama-Imaohji, H., (他4名), Hayashi, T., Kuwahara, T.
    • Journal Title

      J Bacteriol 191

      Pages: 6003-11

    • Related Report
      2009 Final Research Report
  • [Journal Article] Regulation o f virulence by butyrate sensing in enterohaemorrhagic Escherichia coli2009

    • Author(s)
      Nakanishi, N., (他2名), Hayashi, T.., Sugimoto N., Tobe T.
    • Journal Title

      Microbiology 155

      Pages: 521-30

    • Related Report
      2009 Final Research Report
  • [Journal Article] Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli.2009

    • Author(s)
      Y.Ogura, et al.
    • Journal Title

      Proc.Natl.Acad.Sci.USA 106

      Pages: 17939-17944

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Inference of the impact of insertion sequence (IS) elements on bacterial genome diversification through analysis of small-size structural polymorphisms in Escherichia coli O157 genomes.2009

    • Author(s)
      T.Ooka, et al.
    • Journal Title

      Genome Res. 19

      Pages: 1809-1816

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Development of a multiplex PCR-based rapid typing method 1 for enterohemorrhagic Escherichia coli O157 strains.2009

    • Author(s)
      T.Ooka, et al.
    • Journal Title

      J.Clin.Microbiol. 47

      Pages: 2888-2894

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Uptake via Glycoprotein 2 of FimH+ bacteria by M cells initiates mucosal immune response.2009

    • Author(s)
      K.Hase, et al.
    • Journal Title

      Nature 462

      Pages: 226-230

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Enterohaemorrhagic Escherichia coli serogroup O111 inhibits NF-{kappa}B-dependent innate responses in a manner independent of a tvne III secreted OspG orthologue.2009

    • Author(s)
      R.Nobe, et al.
    • Journal Title

      Microbiology 155

      Pages: 3214-3225

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification of the site-specific DNA invertase responsible for the phase variation of SusC/SusD family outer membrane proteins in Bacteroides fragilis.2009

    • Author(s)
      H.Nakayama-Imaohji, et al.
    • Journal Title

      J.Bacteriol. 191

      Pages: 6003-6011

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Pulsed-field gel electrophoresis profile changes resulting from spontaneous chromosomal deletions in enterohemorrhagic Escherichia coli O157:H7 during passage in cattle.2009

    • Author(s)
      N.Yoshii, et al.
    • Journal Title

      Appl.Environ.Microbiol. 75

      Pages: 5719-5726

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis.2009

    • Author(s)
      S.R.Leopold, et al.
    • Journal Title

      Proc.Natl.Acad.Sci.USA 106

      Pages: 8713-8718

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The defective prophage pool of Escherichia coli O157 : prophage-prophage interactions potentiate horizontal transfer of virulence determinants.2009

    • Author(s)
      Md.Asadulghani, et al.
    • Journal Title

      PLoS Pathog. 5

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Production of apoptosis-inducing substances from soybean protein by Clostridium butyricum : characterization of their toxic effects on human colon carcinoma cells.2009

    • Author(s)
      H.Arimochi, et al.
    • Journal Title

      Cancer Lett. 277

      Pages: 190-198

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genetic characterization of type A enterotoxigenic Clostridium perfringens strains.2009

    • Author(s)
      A.Deguchi, et al.
    • Journal Title

      PLoS One. 19

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] ゲノム解析から見えてきた腸管出血性大腸菌の毒素及び病原因子の新知見2009

    • Author(s)
      小椋義俊, 大岡唯祐, 林哲也
    • Journal Title

      化学療法の領域 25

      Pages: 767-777

    • Related Report
      2009 Annual Research Report
  • [Journal Article] メタゲノム研究の最前線-454とメタゲノム解析-2009

    • Author(s)
      森宙史, 林哲也, 黒川顕
    • Journal Title

      蛋白質 核酸 酵素 54

      Pages: 1264-1270

    • Related Report
      2009 Annual Research Report
  • [Journal Article] コリネバクテリウムが起炎菌と考えられた感染性角膜炎の1例.2009

    • Author(s)
      稲田耕大, 他
    • Journal Title

      あたらしい眼科 26

      Pages: 1105-1107

    • Related Report
      2009 Annual Research Report
  • [Journal Article] The complete genome sequence and comparative genome analysis of enteropathogenic E. coli 0127 : H6 strain E2348/692009

    • Author(s)
      Iguchi, A., et.al.
    • Journal Title

      J. Bacteriol 191

      Pages: 347-354

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Simple broad-spectrum protocol using labiase for bacterial cell lysis to prepare genomic DNA for pulsed-field gel electrophoresis analysis2009

    • Author(s)
      Oana, K., et.al.
    • Journal Title

      Microbiol. Immunol 53

      Pages: 45-48

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Regulation of virulence by buty rate sensing in enterohemorrhagic Escherichia2009

    • Author(s)
      Nakanishi, N., et.al.
    • Journal Title

      Microbiology 155

      Pages: 521-530

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Enterohemorrhagic Escherichia coli effector EspL2 induces actin microfilament aggregation through annexin 2 activation2009

    • Author(s)
      Miyahara, A., et.al.
    • Journal Title

      Cell. Microbiol 11

      Pages: 337-350

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genetic heterogeneity among strains of Treponema phagedenis-like spirochetes isolated from dairy cattle with papillomatous digital dermatitis in Japan2009

    • Author(s)
      Yano, T., et.al.
    • Journal Title

      J. Clin. Microbiol 47

      Pages: 727-733

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Production of apoptosis-inducing substances from soybean protein by Clostridium butyricum : characterization of their toxic effects on human colon carcinoma cells2009

    • Author(s)
      Arimochi, H., et.al.
    • Journal Title

      Cancer Lett 277

      Pages: 190-198

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Systematic identification and sequence analysis of the genomic islands of the enteropathogenic Escherichia coli strain B171-8 by the combined use of Whole Genome PCR Scanning and fosmid mapping2008

    • Author(s)
      Ogura Y., (他5名), Ooka T., (他3名), Tobe T., Hayashi T.
    • Journal Title

      J. Bacteriol 190

      Pages: 6948-60

    • Related Report
      2009 Final Research Report
  • [Journal Article] Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coli strain SE11 isolated from a healthy adult2008

    • Author(s)
      Oshima, K., Toh, H., Ogura, Y., (他3名), Ooka, T., (他2名), Hayashi, T., (他2名)
    • Journal Title

      DNA Res 15

      Pages: 375-86

    • Related Report
      2009 Final Research Report
  • [Journal Article] Global regulation by horizontally transferred regulators establishes the pathogenicity of Escherichia coli2008

    • Author(s)
      Abe, H., (他3名), Ogura, Y., (他2名), Hayashi, T., Tobe, T.
    • Journal Title

      DNA Res 15

      Pages: 25-38

    • Related Report
      2009 Final Research Report
  • [Journal Article] Comparative genomic analysis using microarray demonstrates a strong correlation between the presence of the 80-kilobase pathogenicity island and pathogenicity in Kanagawa phenomenon-positive Vibrio parahaemolyticus strains2008

    • Author(s)
      Izutsu, K., (他3名), Hayashi, T., (他1名), Iida T.
    • Journal Title

      Infect Immun 76

      Pages: 1016-23

    • Related Report
      2009 Final Research Report
  • [Journal Article] The whole-genome sequencing of the obligate intracellular bacterium Orientia tsutsugamushi revealed massive gene amplification during reductive genome evolution2008

    • Author(s)
      Nakayama, K., et.al.
    • Journal Title

      DNA Res 15

      Pages: 185-199

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Determination of the Genome Sequence of Porphyromonas gingivalis Strain ATCC 33277 and Genomic Comparison with Strain W83 Revealed Extensive Genome Rearrangements in P. gingivalis2008

    • Author(s)
      Naito, M., et.al.
    • Journal Title

      DNA Res 15

      Pages: 215-225

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Systematic identification and sequence analysis of the genomic islands of the enteropathogenic Escherichia coli strain B 171-8 by the combined use of Whole Genome PCR Scanning and fosmid manning2008

    • Author(s)
      Ogura, Y., et.al.
    • Journal Title

      J. Bacteriol 190

      Pages: 6948-6960

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Complete Genome Sequence and Comparative Analysis of the Wild-type Commensal Escherichia coli Strain SE11 Isolated from a Healthy Adult2008

    • Author(s)
      Oshima, K., et.al.
    • Journal Title

      DNA Res 15

      Pages: 375-386

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Inhibitory effect of fermented brown rice on induction of acute colitis by dextran sulfate sodium in rats2008

    • Author(s)
      Kataoka, K., et.al.
    • Journal Title

      Dig. Dis. Sci 53

      Pages: 1601-1608

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] メタゲノム解析一微生物集団のゲノムをまとめて解析するということー2008

    • Author(s)
      林哲也
    • Journal Title

      現代化学 444

      Pages: 40-42

    • Related Report
      2008 Annual Research Report
  • [Journal Article] 病原性大腸菌における病原性発現システムの構築機構2008

    • Author(s)
      戸邉亨
    • Journal Title

      化学療法の領域 24

      Pages: 611-617

    • Related Report
      2008 Annual Research Report
  • [Journal Article] 腸管出血性大腸菌(EHEC)の病原性、病態に関わる研究のその後の進展2008

    • Author(s)
      戸邉亨
    • Journal Title

      化学療法の領域 24

      Pages: 748-756

    • Related Report
      2008 Annual Research Report
  • [Journal Article] Precise region and the character of the pathogenicity island in clinical Vibrio parahaemolyticus2008

    • Author(s)
      Sugiyama, T., et. al.
    • Journal Title

      J. Bacteriol. 190

      Pages: 1835-1837

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Distribution, functional expression genetic organization of Cif, a phage-encoded type III-secreted effector from enteropathogenic and enterohaemorragic Escherichia coli.2008

    • Author(s)
      Loukiadis E., et. al.
    • Journal Title

      J. Bacteriol. 190(1)

      Pages: 275-285

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Enteropathogenic Escherichia coli (EPEC) O125:H6 triggers attaching and effacing lesions on human intestinal biopsies independently of Nck2008

    • Author(s)
      Bai L., et. al.
    • Journal Title

      Infect. Immun. 76(1)

      Pages: 361-368

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Global regulation by horizontally transferred regulators establishes the pathogenicity of Escherichia coli2008

    • Author(s)
      Abe H., et. al.
    • Journal Title

      DNA Res. 15(1)

      Pages: 25-38

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genomic comparison of the O-antigen biosynthesis gene clusters of Escherichia cnli 055 strains belonging to three distinct lineages2008

    • Author(s)
      Iguchi A., et. al.
    • Journal Title

      Microbiology 154(2)

      Pages: 559-570

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] High-level fluoroquinolone resistance in ophthalmic clinical isolates belonging to the species Corynebacterium macginleyi2008

    • Author(s)
      Eguchi H., et. al.
    • Journal Title

      J. Clin. Microbiol. 46(2)

      Pages: 527-532

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Comparative genomic analysis using microarray demonstrates strong correlation between presence of Vp-PAI and pathogenicity in Kanagawa phenomenon-positive Vibrio parahaemolyticus.2008

    • Author(s)
      Izutsu, K., et. al.
    • Journal Title

      Infect. Immun. 76(3)

      Pages: 1016-1023

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Extensive genomic diversity and selective conservation of virulence-determinants in enterohaemorrhagic Escherichia coli strains of O157 and non-O157 serotypes2007

    • Author(s)
      Ogura, Y., Ooka, T., (他4名), Tobe, T., (他4名), Hayashi, T.
    • Journal Title

      Genome Biol 8

    • Related Report
      2009 Final Research Report
  • [Journal Article] Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes2007

    • Author(s)
      Kurokawa, K., Itoh, T., Kuwahara, T., (他10名), Ogura, Y., (他4名), Hayashi, T., Hattori, M.
    • Journal Title

      DNA Res 14

      Pages: 169-81

    • NAID

      120007121875

    • Related Report
      2009 Final Research Report
  • [Journal Article] TccP2 of O157:H7 and non-O157 enterohemorrhagic Escherichia coli (EHEC): challenging the dogma of EHEC-induced actin polymerization2007

    • Author(s)
      Ogura Y., et. al.
    • Journal Title

      Infect. Immun 75(2)

      Pages: 604-612

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Characterization of tccP2 carried by atypical enteropathogenic Escherichia coli.2007

    • Author(s)
      Ooka T., et. al.
    • Journal Title

      FEMS Microbiol. Lett 271

      Pages: 126-135

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] TccP2-mediated subversion of actin dynamics by EPEC 2-a distinct evolutionary lineage of enteropathogenic Escherichia coli2007

    • Author(s)
      Whale A., et. al.
    • Journal Title

      Microbiology 153

      Pages: 1743-1755

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An improved DNA isolation method for metagenomic analysis of the microbial flora of the human intestine2007

    • Author(s)
      Morita H., et. al.
    • Journal Title

      Microbes Environ. 22(3)

      Pages: 214-222

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Extensive genomic diversity and selective conservation of virulence-determinants in enterohaemorrhagic Escherichia coli strains of O157 and non-O157 serotypes2007

    • Author(s)
      Ogura Y., et. al.
    • Journal Title

      Genome Biol. 8(7)

      Pages: 138-138

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Distribution of stable DnaA-binding sites on the Bacillus Subtilis genome detected using a modified ChIP-chip method.2007

    • Author(s)
      Ishikawa S., et. al.
    • Journal Title

      DNA Res. 14

      Pages: 155-168

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes.2007

    • Author(s)
      Kurokawa K., et. al.
    • Journal Title

      DNA Res. 14

      Pages: 169-181

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Vibrionaceae: bacterial family with evolutionary conserved variability.2007

    • Author(s)
      Dryselius, R., et. al.
    • Journal Title

      Res. Microbiol. 158

      Pages: 479-486

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Tyrosine phosphorylation controls cortactin binding to two EHEC effectors: Tir and EspFu/TccP.2007

    • Author(s)
      Cantarelli, V.V., et. al.
    • Journal Title

      Cell. Microbiol 9

      Pages: 1782-1795

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification and characterization of VopT, a novel ADP- ribosyltransferase effector protein secreted via the Vibrio parahaemolyticus Type III secretion system 2.2007

    • Author(s)
      Kodama, T., et. al.
    • Journal Title

      Cell. Microbiol. 9

      Pages: 2598-2609

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 微生物における比較ゲノム研究の進展2007

    • Author(s)
      林哲也
    • Journal Title

      実験医学 25(2)

      Pages: 226-272

    • Related Report
      2007 Annual Research Report 2006 Annual Research Report
  • [Journal Article] ヒト腸内細菌叢のゲノムシークエンス2007

    • Author(s)
      服部正平、, 他
    • Journal Title

      腸内細菌学雑誌 21(3)

      Pages: 187-197

    • Related Report
      2007 Annual Research Report
  • [Journal Article] ゲノムから見えてきた腸炎ビブリオの病原性2007

    • Author(s)
      飯田哲也
    • Journal Title

      化学療法の領域 23

      Pages: 101-106

    • Related Report
      2007 Annual Research Report 2006 Annual Research Report
  • [Journal Article] 細菌の病原性と生残戦略との関連-細菌にとって「病原因子」とは?-.2007

    • Author(s)
      飯田哲也
    • Journal Title

      JMV (Journal of Vbterinary Medicine) 60

      Pages: 585-586

    • Related Report
      2007 Annual Research Report
  • [Journal Article] コレラ菌・腸炎ビブリオ感染症.特集 変貌する細菌感染症2007

    • Author(s)
      松田重輝、飯田哲也
    • Journal Title

      医学のあゆみ 223

      Pages: 619-622

    • Related Report
      2007 Annual Research Report
  • [Journal Article] ビブリオ属細菌にみられる2つの染色体よりなるゲノム2007

    • Author(s)
      飯田哲也
    • Journal Title

      化学療法の領域 23

      Pages: 1757-1762

    • Related Report
      2007 Annual Research Report
  • [Journal Article] 病原性大腸菌および赤痢菌における環境応答による病原性発現調節2007

    • Author(s)
      戸邉亨
    • Journal Title

      日本細菌学雑誌 62

      Pages: 337-346

    • Related Report
      2007 Annual Research Report
  • [Journal Article] TccP2 of O157:H7 and non-O157 enterohemorrhagic Escherichia coli (EHEC) : challenging the dogma of EHEC-induced actin polymerization.2007

    • Author(s)
      Y.Ogura, et al.
    • Journal Title

      Infect.Immun. 75(2)

      Pages: 604-612

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Tetrameric Structure of Thermostable Direct Hemolysin from Vibrio parahaemolyticus Revealed by Ultracentrifugation, Small Angle X-ray Scattering and Electron Microscopy.2007

    • Author(s)
      D.Hamada, et al.
    • Journal Title

      J. Mol. Biol. 365

      Pages: 187-195

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Maturation of functional type III secretion machinery by activation of anaerobic respiration in enterohaemorrhagic Escherichia coli.2007

    • Author(s)
      H.Ando, et al.
    • Journal Title

      Microbiology 153

      Pages: 464-473

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Complexity of the Genomic Diversity in Entrohaemorrhagic Escherichia coli O157 Revealed by the Combinational Use of the O157 Sakai OligoDNA Microarray and the Whole Genome PCR scanning2006

    • Author(s)
      Ogura, Y., Kurokawa K., Ooka, T., Tashiro, K., Tobe, T., (他6名), Hayashi, T.
    • Journal Title

      DNA Res 13

      Pages: 3-14

    • Related Report
      2009 Final Research Report
  • [Journal Article] ppGpp with DksA controls gene expression in the locus of enterocyte effacement (LEE) pathogenicity island of enterohaemorrhagic Escherichia coli through activation of two virulence regulatory genes2006

    • Author(s)
      Nakanishi, N., Abe, H., Ogura, Y., Hayashi, T., (他3名), Tobe, T.
    • Journal Title

      Mol Microbiol 61

      Pages: 194-205

    • Related Report
      2009 Final Research Report
  • [Journal Article] An extensive repertoire of type III secretion effectors in Escherichia coli O157 and the role of lambdoid phages in their dissemination2006

    • Author(s)
      Tobe, T., (他9名), Hayashi, T., Pallen, M.J.
    • Journal Title

      Pro Natl Acad Sci USA 103

      Pages: 14941-46

    • Related Report
      2009 Final Research Report
  • [Journal Article] Breaking the barrier between commensalism and pathogenicity.2006

    • Author(s)
      T.Hayashi.
    • Journal Title

      Science 313

      Pages: 772-773

    • Related Report
      2006 Annual Research Report
  • [Journal Article] An extensive repertoire of type III secretion effectors in Escherichia coli O157 and the role of lambdoid phages in their dissemination.2006

    • Author(s)
      T.Tobe, et al.
    • Journal Title

      Proc. Natl. Acad. Sci. U S A. 103

      Pages: 14941-14946

    • Related Report
      2006 Annual Research Report
  • [Journal Article] ppGpp with DksA controls gene expression in the LEE pathogenicity island of enterohaemorrhagic Escherichia coli through activation of two virulence regulatory genes.2006

    • Author(s)
      N.Nakanishi, et al.
    • Journal Title

      Mol.Microbiol. 61(1)

      Pages: 194-205

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Complexity of the genomic diversity of enterohaemorrhagic Escherichia coli O157 revealed by the combinational use of the O157 Sakai oligo DNA microarray and the Whole Genome PCR Scanning.2006

    • Author(s)
      Y.Ogura, et al.
    • Journal Title

      DNA Res. 13

      Pages: 3-14

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Identification of proteins secreted via the Vibrio parahaemolyticus type III secretion system 1.2006

    • Author(s)
      T.Ono, et al.
    • Journal Title

      Infect.Immun. 74

      Pages: 1032-1042

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Cortactin is essential for F-actin assembly in enteropathogenic Escherichia coli (EPEC)- and enterohaemorrhagic E.coli (EHEC)-induced pedestals and the α-helical region is involved in the localization of cortactin to bacterial attachment sites.2006

    • Author(s)
      V.V.Cantarelli, et al.
    • Journal Title

      Cell.Microbiol. 8

      Pages: 769-780

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Two type IV pili of Vibrio parahaemolyticus play different roles in biofilm formation.2006

    • Author(s)
      A.Shime-Hattori, et al.
    • Journal Title

      FEMS Microbiol. Lett. 264

      Pages: 89-97

    • Related Report
      2006 Annual Research Report
  • [Journal Article] VP1686, a Vibrio type III secretion protein, induces Toll-like receptor independent apoptosis in macrophage through NF-□B inhibition.2006

    • Author(s)
      B.N.Bhattacharjee, et al.
    • Journal Title

      J.Biol.Chem. 281

      Pages: 36897-36904

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Vibrio2005:the first International conference on the biology of Vibrios.2006

    • Author(s)
      F.L.Thompson, et al.
    • Journal Title

      J.Bacteriol. 188

      Pages: 4592-4596

    • Related Report
      2006 Annual Research Report
  • [Journal Article] ヒト常在菌を含む環境細菌叢のメタゲノム解析.2006

    • Author(s)
      林哲也, 服部正平
    • Journal Title

      細胞工学 25(7)

      Pages: 812-816

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Dual regulatory pathways integrating the RcsC-RcsD-RcsB signalling system control enterohaemorrhagic Escherichia coli pathogenicity.2006

    • Author(s)
      Tobe, T., et al.
    • Journal Title

      Mol.Microbiol 59

      Pages: 320-333

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Identification of proteins secreted via the Vibrio parahaemolyticus type III secretion system 1.2006

    • Author(s)
      Ono, T., et al.
    • Journal Title

      Infect.Immun. 74

      Pages: 1032-1042

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Complexity of the genomic diversity of entrohaemorrhagic Escherichia coli O157 revealed by the combinational use of the O157 Sakai oligo DNA microarray and the Whole Genome PCR Scanning.2006

    • Author(s)
      Ogura, Y., et al.
    • Journal Title

      DNA Res. (in press)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Dual regulatory pathways integrating the RcsC-RcsD-RcsB signaling system control enterohaemorrhagic Escherichia coli pathogenicity2005

    • Author(s)
      Tobe, T., (他4名), Hayashi, T., (他2名)
    • Journal Title

      Mol Microbiol 59

      Pages: 320-33

    • Related Report
      2009 Final Research Report
  • [Journal Article] Vibrios commonly possess two chromosomes.2005

    • Author(s)
      Okada, K., et al.
    • Journal Title

      J.Bacteriol. 187

      Pages: 752-757

    • Related Report
      2005 Annual Research Report
  • [Journal Article] vpaH, a Gene encoding a novel H-NS-like protein that was possibly horizontally acquired, regulates the Bbiogenesis of lateral flagella in trh-positive Vibrio parahaemolyticus.2005

    • Author(s)
      Park, K.-S., et al.
    • Journal Title

      Infect.Immun. 73

      Pages: 5754-5761

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Microarray analysis identifies apoptosis regulatory genes expression in HCT116 cells infected with thermostable direct hemolysin gene-deletion mutant of Vibrio parahaemolyticus.2005

    • Author(s)
      Bhattacharjee, B.N., et al.
    • Journal Title

      Biochem.Biophys.Res.Com. 335

      Pages: 328-334

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Genome sequence of Clostridium botulinum type C neurotoxin-converting phage and the molecular mechanisms of unstable lysogeny.2005

    • Author(s)
      Sakaguchi, Y., et al.
    • Journal Title

      Proc.Natl.Acad.Sci.U S A. 102

      Pages: 17472-17477

    • Related Report
      2005 Annual Research Report
  • [Journal Article] 大腸菌:多様な病原性を示す腸内常在菌.2005

    • Author(s)
      林哲也
    • Journal Title

      微生物はなぜ病気をおこすか-ゲノムの特徴-(林英生 編集)

      Pages: 58-73

    • Related Report
      2005 Annual Research Report
  • [Journal Article] 細菌の病原性遺伝子システムの獲得と進化.2005

    • Author(s)
      林哲也
    • Journal Title

      蛋白質 核酸 酵素 50

      Pages: 2204-2209

    • Related Report
      2005 Annual Research Report
  • [Journal Article] 大腸菌O157のゲノム研究とその応用.2005

    • Author(s)
      大岡唯祐, 小椋義俊, 林哲也
    • Journal Title

      臨床微生物迅速診断研究会誌(JARMAM) 16

      Pages: 179-181

    • Related Report
      2005 Annual Research Report
  • [Journal Article] ゲノムが語る細菌の病原性.2005

    • Author(s)
      林哲也
    • Journal Title

      細胞工学 24

      Pages: 1302-1306

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Identification of candidate pathogens of papillomatous digital dermatitis in dairy cattle from quantitative 16S rRNA clonal analysis.

    • Author(s)
      T.Yano, et al.
    • Journal Title

      Vet.Microbiol. (in press)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Efficient electrotransformation of Bacteroides fragilis.

    • Author(s)
      M.Ichimura, et al.
    • Journal Title

      Appl.Environ.Microbiol. (in press)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Role of EspL2 in adherence of enterohaemorrhagic Escherichia coli : alternative pathway for modulating cytoskeleton through Annexin A2 function.

    • Author(s)
      T.Tobe
    • Journal Title

      FEBS Journal (in press)

    • Related Report
      2009 Annual Research Report
  • [Journal Article] The defective prophage pool of Escherichia coli 0157 : prophage-prophage interactions notentiate horizontal transfer of virulence determinants

    • Author(s)
      Asadulghani, et.al.
    • Journal Title

      PLoS Pathog (in press)

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular analysis of an extrachromosomal element encoding the C2 toxingene discovered in Clostridium botulinum type C

    • Author(s)
      Sakaguchi, Y., et.al.
    • Journal Title

      J Bacteriol (in press)

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] メタゲノム研究の最前線

    • Author(s)
      森宙史, 他
    • Journal Title

      蛋白質核酸酵素史 (印刷中)

    • Related Report
      2008 Annual Research Report
  • [Journal Article] Characterization of tccP2 carried by atypical enteropathogenic Escherichia coli.

    • Author(s)
      T.Ooka, et al.
    • Journal Title

      FEMS Microbiol. Lett. (in press)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] TccP2-mediated subversion of actin dynamics by EPEC2 - a distinct evolutionary lineage of enteropathogenic Escherichia coli.

    • Author(s)
      A.Whale, et al.
    • Journal Title

      Microbiology (in press)

    • Related Report
      2006 Annual Research Report
  • [Presentation] 病原性大腸菌のゲノム解析からみた細菌の進化・多様化と遺伝子水平伝播の役割.2010

    • Author(s)
      林哲也(招待講演)
    • Organizer
      Advanced Seminar Series on Microbiology and Immunology
    • Place of Presentation
      Osaka
    • Year and Date
      2010-01-19
    • Related Report
      2009 Annual Research Report
  • [Presentation] Genomic view on the diversification and evolution of enterohemorrhagic Escherichia coli (EHEC)2010

    • Author(s)
      Hayashi T. (invited speaker)
    • Organizer
      The third China-Japan Science Forum, Diseases Prevention and Control
    • Place of Presentation
      Wuhan, China.
    • Related Report
      2009 Final Research Report
  • [Presentation] 病原性大腸菌O157:H7の志賀毒素変換ファージの比較解析.2010

    • Author(s)
      小椋義俊, 他
    • Organizer
      第4回ゲノム微生物学会年会
    • Place of Presentation
      福岡
    • Related Report
      2009 Annual Research Report
  • [Presentation] 種々の大腸菌株を用いた溶血毒素遺伝子の解析.2010

    • Author(s)
      村瀬一典, 他
    • Organizer
      第4回ゲノム微生物学会年会
    • Place of Presentation
      福岡
    • Related Report
      2009 Annual Research Report
  • [Presentation] 病原性大腸菌における3型分泌系(T3SS)の進化.2010

    • Author(s)
      大岡唯祐, 他
    • Organizer
      第4回ゲノム微生物学会年会
    • Place of Presentation
      福岡
    • Related Report
      2009 Annual Research Report
  • [Presentation] Genomic view on the diversification and evolution of enterohemorrhagic Escherichia coli(EHEC).2010

    • Author(s)
      Hayashi, T.(Invited Speaker)
    • Organizer
      The third China-Japan Science Forum, Diseases Prevention and Control.
    • Place of Presentation
      Wuhan, China.
    • Related Report
      2009 Annual Research Report
  • [Presentation] 大腸菌の多様化と病原性獲得機構についてのゲノム解析-包括的ゲノム解析で細菌を「探る」.2010

    • Author(s)
      戸邉亨
    • Organizer
      第83回日本細菌学会総会
    • Place of Presentation
      横浜
    • Related Report
      2009 Annual Research Report
  • [Presentation] 出血性大腸菌病原性遺伝子NleCによる免疫抑制機構の解析.2010

    • Author(s)
      願宏哲, 他
    • Organizer
      第83回日本細菌学会総会
    • Place of Presentation
      横浜
    • Related Report
      2009 Annual Research Report
  • [Presentation] IS621 fingerprinting of bovine and human O26 : H11 enterohemorrhagic Escherichia coli.2010

    • Author(s)
      J.Mainil, et al.
    • Organizer
      第83回日本細菌学会総会
    • Place of Presentation
      横浜
    • Related Report
      2009 Annual Research Report
  • [Presentation] 病原大腸菌が産生する細胞壊死因子CNF3をコードするプラスミドの性状解析.2010

    • Author(s)
      久恒順三, 他
    • Organizer
      第83回日本細菌学会総会
    • Place of Presentation
      横浜
    • Related Report
      2009 Annual Research Report
  • [Presentation] G型ボツリヌス毒素遺伝子をコードするプラスミドの解析.2010

    • Author(s)
      阪口義彦, 他
    • Organizer
      第83回日本細菌学会総会
    • Place of Presentation
      横浜
    • Related Report
      2009 Annual Research Report
  • [Presentation] Functional analyses of the late region genes of Stx2 phage from O157:H7 Sakai.2010

    • Author(s)
      Md.R.Islam, et al.
    • Organizer
      第83回日本細菌学会総会
    • Place of Presentation
      横浜
    • Related Report
      2009 Annual Research Report
  • [Presentation] 種々の大腸菌株における溶血毒素遺伝子の保有状況とその活性.2010

    • Author(s)
      村瀬一典, 他
    • Organizer
      第83回日本細菌学会総会
    • Place of Presentation
      横浜
    • Related Report
      2009 Annual Research Report
  • [Presentation] Orientia tsutsugamushiに存在が予想されるペプチドグリカンの解析.2010

    • Author(s)
      中山恵介, 他
    • Organizer
      第83回日本細菌学会総会
    • Place of Presentation
      横浜
    • Related Report
      2009 Annual Research Report
  • [Presentation] 腸管出血性大腸菌(EHEC)及び腸管病原性大腸菌(EPEC)における3型分泌系(T3SS)の進化.2010

    • Author(s)
      大岡唯祐, 他
    • Organizer
      第83回日本細菌学会総会
    • Place of Presentation
      横浜
    • Related Report
      2009 Annual Research Report
  • [Presentation] 腸管出血性大腸菌O157の志賀毒素ファージの比較解析.2010

    • Author(s)
      小椋義俊, 他
    • Organizer
      第83回日本細菌学会総会
    • Place of Presentation
      横浜
    • Related Report
      2009 Annual Research Report
  • [Presentation] 難培養性腸内細菌ゲノムへのアプローチ.2010

    • Author(s)
      桑原知巳
    • Organizer
      第83回日本細菌学会総会
    • Place of Presentation
      横浜
    • Related Report
      2009 Annual Research Report
  • [Presentation] Bacteroides fragilisにおけるリン酸応答制御機構の解明.2010

    • Author(s)
      脇本信, 他
    • Organizer
      第83回日本細菌学会総会
    • Place of Presentation
      横浜
    • Related Report
      2009 Annual Research Report
  • [Presentation] Genomic view on the parallel evolution of enterohemorrhagic Escherichia coli strains2009

    • Author(s)
      Hayashi T. (invited speaker)
    • Organizer
      The 4th Nagasaki Symposium on Tropical and Emerging Infectious Diseases
    • Place of Presentation
      Nagasaki
    • Year and Date
      2009-11-26
    • Related Report
      2009 Final Research Report
  • [Presentation] Genomic view on the parallel evolution of enterohemorrhagic Escherichia coli strains.2009

    • Author(s)
      Hayashi, T.(Invited Speaker)
    • Organizer
      The 4^<th> Nagasaki Symposium on Tropical and Emerging Infectious Diseases.
    • Place of Presentation
      Nagasaki
    • Year and Date
      2009-11-26
    • Related Report
      2009 Annual Research Report
  • [Presentation] 大腸菌O55/O157系統における溶血因子の解析2009

    • Author(s)
      村瀬一典, 他
    • Organizer
      若手研究者育成のためのワークショップ~若手コロセウム(III)in宮崎~
    • Place of Presentation
      宮崎
    • Year and Date
      2009-10-26
    • Related Report
      2009 Annual Research Report
  • [Presentation] 腸管出血性大腸菌(EHEC)及び腸管病原性大腸菌(EPEC)におけるIII型分泌系コード領域(LEE)の構造比較解析2009

    • Author(s)
      大岡唯祐, 他
    • Organizer
      若手研究者育成のためのワークショップ~若手コロセウム(III)in宮崎~
    • Place of Presentation
      宮崎
    • Year and Date
      2009-10-26
    • Related Report
      2009 Annual Research Report
  • [Presentation] Whole genome sequencing analysis of O26, O111, and O103 EHEC2009

    • Author(s)
      Hayashi T. (invited speaker)
    • Organizer
      VTEC2009 (7th International Symposium on Shiga Toxin (Verocytotoxin)-Producing Escherichia coli Infections)
    • Place of Presentation
      Buenos Aires
    • Year and Date
      2009-05-12
    • Related Report
      2009 Final Research Report
  • [Presentation] Whole genome sequencing analysis of O26, O111, and O103 EHEC.2009

    • Author(s)
      Hayashi T.(Invited Speaker)
    • Organizer
      VTEC2009
    • Place of Presentation
      Buenos Aires.
    • Year and Date
      2009-05-12
    • Related Report
      2009 Annual Research Report
  • [Presentation] Variation of hemolytic activities in the O55/O157 Escherichia coli lineage.2009

    • Author(s)
      K.Murase, et al.
    • Organizer
      VTEC2009
    • Place of Presentation
      Buenos Aires.
    • Year and Date
      2009-05-12
    • Related Report
      2009 Annual Research Report
  • [Presentation] Fosmid mapping法とWhole genome PCR scanning法を用いた腸管病原性大腸菌B171株のgenomic islandの網羅的な同定と配列決定.2009

    • Author(s)
      小椋義俊, 他
    • Organizer
      日本分子生物学会 第9回春季シンポジウム
    • Place of Presentation
      宮崎
    • Year and Date
      2009-05-11
    • Related Report
      2009 Annual Research Report
  • [Presentation] オリエンチア属細菌間における比較ゲノム解析.2009

    • Author(s)
      中山恵介, 他
    • Organizer
      日本分子生物学会 第9回春季シンポジウム
    • Place of Presentation
      宮崎
    • Year and Date
      2009-05-11
    • Related Report
      2009 Annual Research Report
  • [Presentation] 腸管出血性大腸菌(EHEC)及び腸管病原性大腸菌(EPEC)におけるLEE領域の多様性解析.2009

    • Author(s)
      大岡唯祐, 他
    • Organizer
      日本分子生物学会 第9回春季シンポジウム
    • Place of Presentation
      宮崎
    • Year and Date
      2009-05-11
    • Related Report
      2009 Annual Research Report
  • [Presentation] Functional analyses of unknown genes of Stx2 phage (Sp5) from O157 :H7 Sakai.2009

    • Author(s)
      Md.R.Islam, et al.
    • Organizer
      日本分子生物学会 第9回春季シンポジウム
    • Place of Presentation
      宮崎
    • Year and Date
      2009-05-11
    • Related Report
      2009 Annual Research Report
  • [Presentation] Functional analyses of unknown genes of Stx2 phage (Sp5) from 0157:H7 Sakai.2009

    • Author(s)
      Md.R.Islam, et al.
    • Organizer
      日本分子生物学会 第9回春季シンポジウム
    • Place of Presentation
      宮崎
    • Year and Date
      2009-05-11
    • Related Report
      2009 Annual Research Report
  • [Presentation] Generation of new Stx1 phages by recombination of Stx2 and Stx1 phage genomes.2009

    • Author(s)
      Md.Asadulghani, et al.
    • Organizer
      日本分子生物学会 第9回春季シンポジウム
    • Place of Presentation
      宮崎
    • Year and Date
      2009-05-11
    • Related Report
      2009 Annual Research Report
  • [Presentation] IS detection in O26 enterohemorrhagic Escherichia coli.2009

    • Author(s)
      J.Mainil, et al.
    • Organizer
      日本分子生物学会 第9回春季シンポジウム
    • Place of Presentation
      宮崎
    • Year and Date
      2009-05-11
    • Related Report
      2009 Annual Research Report
  • [Presentation] The complete genome sequence and comparative genome analysis of EPEC O127 : H6 strain E2348/692009

    • Author(s)
      井口純, 他
    • Organizer
      第82回日本細菌学会総会
    • Place of Presentation
      名古屋
    • Year and Date
      2009-03-12
    • Related Report
      2008 Annual Research Report
  • [Presentation] Identification and sequence analysis of the genomic islands of EPEC B171 by fosmid mapping2009

    • Author(s)
      小椋義俊, 他
    • Organizer
      第82回日本細菌学会総会
    • Place of Presentation
      名古屋
    • Year and Date
      2009-03-12
    • Related Report
      2008 Annual Research Report
  • [Presentation] Generation of new Stxl phages by recombination of Stx2 and Stxl phage genomes2009

    • Author(s)
      Asadulghani, Md., et.al.
    • Organizer
      第82回日本細菌学会総会
    • Place of Presentation
      名古屋
    • Year and Date
      2009-03-12
    • Related Report
      2008 Annual Research Report
  • [Presentation] Systematic functional analyses of unknown genes of Stx2 phage from O157 : H7 Sakai2009

    • Author(s)
      Islam, Md.R., et.al.
    • Organizer
      第82回日本細菌学会総会
    • Place of Presentation
      名古屋
    • Year and Date
      2009-03-12
    • Related Report
      2008 Annual Research Report
  • [Presentation] 腸管出血性大腸菌(EHEC)及び腸管病原性大腸菌(EPEC)におけるLEE領域の多様性解析2009

    • Author(s)
      大岡唯祐, 他
    • Organizer
      第82回日本細菌学会総会
    • Place of Presentation
      名古屋
    • Year and Date
      2009-03-12
    • Related Report
      2008 Annual Research Report
  • [Presentation] 侵襲(劇症型を含む)・非侵襲性疾患と環境分離Aeromonas株の系統分析と表現型病原因子の分布2009

    • Author(s)
      立山直, 他
    • Organizer
      第82回日本細菌学会総会
    • Place of Presentation
      名古屋
    • Year and Date
      2009-03-12
    • Related Report
      2008 Annual Research Report
  • [Presentation] 大腸菌055/0157系統における溶血活性のバリエーション2009

    • Author(s)
      村瀬一典, 他
    • Organizer
      第82回日本細菌学会総会
    • Place of Presentation
      名古屋
    • Year and Date
      2009-03-12
    • Related Report
      2008 Annual Research Report
  • [Presentation] STECにおいてISの転移に関与する因子の同定2009

    • Author(s)
      楠本正博, 他
    • Organizer
      第82回日本細菌学会総会
    • Place of Presentation
      名古屋
    • Year and Date
      2009-03-12
    • Related Report
      2008 Annual Research Report
  • [Presentation] 腸管出血性大腸菌O157 : H7における核様体構造変化による病原性遺伝子発現活性化2009

    • Author(s)
      戸邉亨, 他
    • Organizer
      第82回日本細菌学会総会
    • Place of Presentation
      名古屋
    • Year and Date
      2009-03-12
    • Related Report
      2008 Annual Research Report
  • [Presentation] C型とD型ボツリヌスC2毒素遺伝子をコードするプラスミドの解析2009

    • Author(s)
      阪口義彦, 他
    • Organizer
      第82回日本細菌学会総会
    • Place of Presentation
      名古屋
    • Year and Date
      2009-03-12
    • Related Report
      2008 Annual Research Report
  • [Presentation] 腸内フローラ代謝産物による腸管出血性大腸菌の病原性発現制御2009

    • Author(s)
      戸邉亨
    • Organizer
      第82回日本細菌学会総会
    • Place of Presentation
      名古屋
    • Year and Date
      2009-03-12
    • Related Report
      2008 Annual Research Report
  • [Presentation] Bacteroides fragilisの形質転換法に関する検討2009

    • Author(s)
      市村穣,他
    • Organizer
      第82回日本細菌学会総会
    • Place of Presentation
      名古屋
    • Year and Date
      2009-03-12
    • Related Report
      2008 Annual Research Report
  • [Presentation] Bacteroides fragilisにおける外膜vesicle形成と英膜発現との関連性2009

    • Author(s)
      今大路治之, 他
    • Organizer
      第82回日本細菌学会総会
    • Place of Presentation
      名古屋
    • Year and Date
      2009-03-12
    • Related Report
      2008 Annual Research Report
  • [Presentation] 腸管病原性大腸菌(EPEC)E2348/69株のゲノム解析2009

    • Author(s)
      井口純, 他
    • Organizer
      第3回ゲノム微生物学会年会
    • Place of Presentation
      東京
    • Year and Date
      2009-03-06
    • Related Report
      2008 Annual Research Report
  • [Presentation] Fosmid mapping法とWhole genome PCR scanning法を用いた腸管病原性大腸菌B171株のgenomic islandの網羅的な同定と配列決定2009

    • Author(s)
      小椋義俊, 他
    • Organizer
      第3回ゲノム微生物学会年会
    • Place of Presentation
      東京
    • Year and Date
      2009-03-06
    • Related Report
      2008 Annual Research Report
  • [Presentation] Systematic functional analyses of unknown genes of Stx2 phage from O157 : H7 Sakai2009

    • Author(s)
      Islam, Md.R., et.al.
    • Organizer
      第3回ゲノム微生物学会年会
    • Place of Presentation
      東京
    • Year and Date
      2009-03-06
    • Related Report
      2008 Annual Research Report
  • [Presentation] rRNA遺伝子を用いたヒト常在細菌フローラの多様性解析2009

    • Author(s)
      宮崎菜穂, 他
    • Organizer
      第3回ゲノム微生物学会年会
    • Place of Presentation
      東京
    • Year and Date
      2009-03-06
    • Related Report
      2008 Annual Research Report
  • [Presentation] 大規模な細菌種組成解析における新型シークエンサーの有効性の検証2009

    • Author(s)
      森宙史, 他
    • Organizer
      第3回ゲノム微生物学会年会
    • Place of Presentation
      東京
    • Year and Date
      2009-03-06
    • Related Report
      2008 Annual Research Report
  • [Presentation] Generation of new Stx1 phages in E. coli O157 by recombination of Stx2 and Stx 1 phage genomes2009

    • Author(s)
      Asadulghani, Md., et.al.
    • Organizer
      第3回ゲノム微生物学会年会
    • Place of Presentation
      東京
    • Year and Date
      2009-03-05
    • Related Report
      2008 Annual Research Report
  • [Presentation] 病原性大腸菌のIII型分泌システムをコードする]EE領域に関する多様性解析2009

    • Author(s)
      大岡唯祐, 他
    • Organizer
      第3回ゲノム微生物学会年会
    • Place of Presentation
      東京
    • Year and Date
      2009-03-05
    • Related Report
      2008 Annual Research Report
  • [Presentation] 大腸菌O55/O157系統における溶血活性の多様性2009

    • Author(s)
      村瀬一典, 他
    • Organizer
      第3回ゲノム微生物学会年会
    • Place of Presentation
      東京
    • Year and Date
      2009-03-05
    • Related Report
      2008 Annual Research Report
  • [Presentation] ヒト腸内メタゲノムと既知の大腸菌ゲノムの比較解析2009

    • Author(s)
      伊藤世士洋, 他
    • Organizer
      第3回ゲノム微生物学会年会
    • Place of Presentation
      東京
    • Year and Date
      2009-03-05
    • Related Report
      2008 Annual Research Report
  • [Presentation] 病原菌ゲノム解析の新しい流れ : 同一菌種内での多菌株比較解析と常在菌叢のメタゲノム解析2009

    • Author(s)
      林哲也
    • Organizer
      第43回緑膿菌感染症研究会
    • Place of Presentation
      京都(教育講演)
    • Year and Date
      2009-02-06
    • Related Report
      2008 Annual Research Report
  • [Presentation] Genomic view on the parallel evolution of enteropathogenic Escherichia coli strains2009

    • Author(s)
      Hayashi, T.
    • Organizer
      INRA-JSPS Workshop
    • Place of Presentation
      Paris(Invited Speaker)
    • Year and Date
      2009-01-29
    • Related Report
      2008 Annual Research Report
  • [Presentation] 大腸菌の病原性発現制御における核様体構造の役割2009

    • Author(s)
      戸邉亨
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Related Report
      2009 Annual Research Report
  • [Presentation] 大腸菌の病原性発現制御系のTCSネットワークとの相互作用による環境応答機構の形成2008

    • Author(s)
      戸邉亨
    • Organizer
      第31回日本分子生物学会年会
    • Place of Presentation
      神戸
    • Year and Date
      2008-12-11
    • Related Report
      2008 Annual Research Report
  • [Presentation] 腸管出血性大腸菌O157のエフェクター蛋白質EspL2はAmexin2の機能を修飾し感染を促進する2008

    • Author(s)
      宮原顕, 他
    • Organizer
      第61回日本細菌学会関西支部総会
    • Place of Presentation
      京都
    • Year and Date
      2008-11-08
    • Related Report
      2008 Annual Research Report
  • [Presentation] 腸管出血性大腸菌O157における酪酸塩応答による病原性発現調節2008

    • Author(s)
      中西典子, 他
    • Organizer
      第61回日本細菌学会関西支部総会
    • Place of Presentation
      京都
    • Year and Date
      2008-11-08
    • Related Report
      2008 Annual Research Report
  • [Presentation] Genome analysis of O157 and non-O157 EHEC atrains2008

    • Author(s)
      Hayashi, T. (Invited Speaker)
    • Organizer
      The 9^<th> Korea-Japan International Symposium on Microbiology
    • Place of Presentation
      Seoul
    • Year and Date
      2008-10-17
    • Related Report
      2008 Annual Research Report
  • [Presentation] 侵襲・非侵襲性疾患と環境分離Aeromonas株の系統分析と表現型病原因子の分布2008

    • Author(s)
      立山直, 他
    • Organizer
      第61回日本細菌学会九州支部総会
    • Place of Presentation
      熊本
    • Year and Date
      2008-10-03
    • Related Report
      2008 Annual Research Report
  • [Presentation] Systematic identification and sequence analysis of genomic islands of enteropathogenic Escherichia coli strain B 171-8 by the combinational use of Whole Genome PCR Scanning and fosmid mapping2008

    • Author(s)
      Ogura, Y., et.al.
    • Organizer
      日米コレラ日本側総会
    • Place of Presentation
      大阪
    • Year and Date
      2008-07-30
    • Related Report
      2008 Annual Research Report
  • [Presentation] 病原性大腸菌と非病原性大腸菌のゲノム比較2008

    • Author(s)
      林哲也(シンポジスト)
    • Organizer
      第12回腸内細菌学会
    • Place of Presentation
      東京
    • Year and Date
      2008-06-13
    • Related Report
      2008 Annual Research Report
  • [Presentation] 腸管出血性大腸菌O157のエフェクター蛋白質EspL2の機能2008

    • Author(s)
      宮原顕, その, 他
    • Organizer
      第81回日本細菌学会総会
    • Place of Presentation
      京都
    • Year and Date
      2008-03-25
    • Related Report
      2007 Annual Research Report
  • [Presentation] 腸管出血性大腸菌O157:H7の短鎖脂肪酸に対する応答機構2008

    • Author(s)
      中西典子, その, 他
    • Organizer
      第81回日本細菌学会総会
    • Place of Presentation
      京都
    • Year and Date
      2008-03-24
    • Related Report
      2007 Annual Research Report
  • [Presentation] 腸管出血性大腸菌の病原性発現調節における核様体構造の役割2008

    • Author(s)
      戸邉亨, その, 他
    • Organizer
      第81回日本細菌学会総会
    • Place of Presentation
      京都
    • Year and Date
      2008-03-24
    • Related Report
      2007 Annual Research Report
  • [Presentation] Comparative genomics of O157 and non-O157 enterohemorrhagic Escherichia coli.2008

    • Author(s)
      Hayashi T.
    • Organizer
      Invited Seminar (The Wellcome Trust Sanger Institute)
    • Place of Presentation
      Cambridge, UK
    • Year and Date
      2008-03-17
    • Related Report
      2007 Annual Research Report
  • [Presentation] 腸管出血性大腸菌O157:H7におけるLrpによる病原性遺伝子群の発現制御2008

    • Author(s)
      中西典子, その, 他
    • Organizer
      第2回日本ゲノム微生物学会年会
    • Place of Presentation
      大阪
    • Year and Date
      2008-03-06
    • Related Report
      2007 Annual Research Report
  • [Presentation] 腸管出血性大腸菌の病原性制御因子による遺伝子発現制御機構2008

    • Author(s)
      戸邉亨, その, 他
    • Organizer
      第2回日本ゲノム微生物学会年会
    • Place of Presentation
      大阪
    • Year and Date
      2008-03-06
    • Related Report
      2007 Annual Research Report
  • [Presentation] Comparative genomics of O157 and non-O157 enterohemorrhagic Escherichia coli2008

    • Author(s)
      Hayashi T. (Invited Speaker)
    • Organizer
      The 24th RIB International Symposium on The Frontier of Microbiology-Resouces, Environment, and Genome-
    • Place of Presentation
      Okayama
    • Year and Date
      2008-01-25
    • Related Report
      2007 Annual Research Report
  • [Presentation] Systematic identification and sequence analysis of the genomic islands of the enteropathogenic Escherichia coli strain B171-8 by the combined use of Whole Genome PCR Scanning and fosmid mapping2008

    • Author(s)
      Ogura, Y., et.al.
    • Organizer
      第43回日米コレラ細菌性腸管感染症専門部会
    • Place of Presentation
      Fukuoka
    • Related Report
      2008 Annual Research Report
  • [Presentation] 腸管出血性大腸菌(O26,O111,O103)の全ゲノム解析2008

    • Author(s)
      小椋義俊、その, 他
    • Organizer
      第2回日本ゲノム微生物学会年会
    • Place of Presentation
      大阪
    • Related Report
      2007 Annual Research Report
  • [Presentation] 大腸菌におけるO抗原をコードする領域の組換え過程の解析2008

    • Author(s)
      井口純、その, 他
    • Organizer
      第2回日本ゲノム微生物学会年会
    • Place of Presentation
      大阪
    • Related Report
      2007 Annual Research Report
  • [Presentation] 腸管出血性大腸菌O157の小規模ゲノム構造多型の形成機構に関する詳細な解析2008

    • Author(s)
      大岡唯祐, その, 他
    • Organizer
      第2回日本ゲノム微生物学会年会
    • Place of Presentation
      大阪
    • Related Report
      2007 Annual Research Report
  • [Presentation] A genome-wide survey on phage induction and propagation revealed defective prophages spread virulence determinants from Sakai prophage pool.2008

    • Author(s)
      Asadulghani, et. al.
    • Organizer
      第2回日本ゲノム微生物学会年会
    • Place of Presentation
      大阪
    • Related Report
      2007 Annual Research Report
  • [Presentation] ヒトイ腸内細菌叢のメタゲノム解析2008

    • Author(s)
      林哲也(シンポジスト)
    • Organizer
      第81回日本細菌学会総会
    • Place of Presentation
      京都
    • Related Report
      2007 Annual Research Report
  • [Presentation] ヒト腸内細菌叢のメタゲノム解析2008

    • Author(s)
      林哲也(シンポジスト)
    • Organizer
      第81回日本細菌学会総会
    • Place of Presentation
      京都
    • Related Report
      2007 Annual Research Report
  • [Presentation] 腸管出血性大腸菌の進化におけるファージの役割2008

    • Author(s)
      小椋義俊(シンポジスト)
    • Organizer
      第81回日本細菌学会総会
    • Place of Presentation
      京都
    • Related Report
      2007 Annual Research Report
  • [Presentation] 次世代シーケンサの病原細菌解析への応用.シンポジウムゲノム微生物学の新展開.2008

    • Author(s)
      飯田哲也(シンポジスト)
    • Organizer
      第81回日本細菌学会総会
    • Place of Presentation
      京都
    • Related Report
      2007 Annual Research Report
  • [Presentation] EPEC O55:H7株の溶血活性2008

    • Author(s)
      村瀬一典, その, 他
    • Organizer
      第81回日本細菌学会総会
    • Place of Presentation
      京都
    • Related Report
      2007 Annual Research Report
  • [Presentation] 大腸菌におけるO抗原をコードする領域の組換え過程2008

    • Author(s)
      井口純, その, 他
    • Organizer
      第81回日本細菌学会総会
    • Place of Presentation
      京都
    • Related Report
      2007 Annual Research Report
  • [Presentation] 腸管出血性大腸菌O157の小規模ゲノム構造多型に関する詳細な解析2008

    • Author(s)
      大岡唯祐, その, 他
    • Organizer
      第81回日本細菌学会総会
    • Place of Presentation
      京都
    • Related Report
      2007 Annual Research Report
  • [Presentation] Lateral transfer of virulence or related genes by defective prophages of Sakai prophage pool2008

    • Author(s)
      Asadulghani, et. al.
    • Organizer
      第81回日本細菌学会総会
    • Place of Presentation
      京都
    • Related Report
      2007 Annual Research Report
  • [Presentation] 腸炎ビブリオの耐熱性溶血毒と2つのIII型分泌装置の細胞毒性と腸管毒性における役割.2008

    • Author(s)
      日吉大貴, その, 他
    • Organizer
      第81回日本細菌学会総会
    • Place of Presentation
      京都
    • Related Report
      2007 Annual Research Report
  • [Presentation] DNAマイクロアレイを用いたO3:K6血清型腸炎ビブリオの比較ゲノム解析2008

    • Author(s)
      井筒香織, その, 他
    • Organizer
      第81回日本細菌学会総会
    • Place of Presentation
      京都
    • Related Report
      2007 Annual Research Report
  • [Presentation] Replication dynamics of the Vibrio chromosomes affect gene dosage, expression and location.2008

    • Author(s)
      Dryselius R., et. al.
    • Organizer
      第81回日本細菌学会総会
    • Place of Presentation
      京都
    • Related Report
      2007 Annual Research Report
  • [Presentation] Replication dynamics of the vibiro chromosomes affect gene dosage, expression and location.2008

    • Author(s)
      Dryselius R., et. al.
    • Organizer
      第81回日本細菌学会総会
    • Place of Presentation
      京都
    • Related Report
      2007 Annual Research Report
  • [Presentation] 腸炎ビブリオ耐熱性溶血毒の細胞毒性発現には細胞膜ラフトとのassociationが必要である2008

    • Author(s)
      松田重輝, その, 他
    • Organizer
      第81回日本細菌学会総会
    • Place of Presentation
      京都
    • Related Report
      2007 Annual Research Report
  • [Presentation] 短鎖脂肪酸による腸管出血性大腸菌O157:H7のLEE病原性遺伝子の発現制御解析2007

    • Author(s)
      中西典子、, 他
    • Organizer
      第30回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2007-12-12
    • Related Report
      2007 Annual Research Report
  • [Presentation] 腸管出血性大腸菌の新規エフェクターEspL2の機能解析2007

    • Author(s)
      宮原顕、, 他
    • Organizer
      第30回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2007-12-11
    • Related Report
      2007 Annual Research Report
  • [Presentation] 病原性大腸菌O157-ゲノム解析から見た病原細菌の多様性と適応戦略2007

    • Author(s)
      林哲也(シンポジスト)
    • Organizer
      日本生物科学研究所 創立60周年記念シンポジウム「新興・再興するヒトと動物の共通感染症-その現状と対策を探る」
    • Place of Presentation
      東京
    • Year and Date
      2007-10-02
    • Related Report
      2007 Annual Research Report
  • [Presentation] Modification of gene regulatory network by virulence regulators in Escherichia coli2007

    • Author(s)
      Tobe, T., et. al.
    • Organizer
      Microbial Genomes
    • Place of Presentation
      Hinxton, UK
    • Related Report
      2007 Annual Research Report
  • [Presentation] New tendancies in the study of microbial genomics.2007

    • Author(s)
      Iida, T.,
    • Organizer
      24th Congresso Brasileiro de Microbiologia-CBM2007
    • Place of Presentation
      Brasilia, Brazil
    • Related Report
      2007 Annual Research Report
  • [Presentation] Pathogenic mechanism and genomics of Vibrio parahaemolyticus2007

    • Author(s)
      Iida, T., (Keynote Lecture)
    • Organizer
      VIBRIO 2007
    • Place of Presentation
      Paris
    • Related Report
      2007 Annual Research Report
  • [Presentation] 細菌の病原性と生残戦略との関連2007

    • Author(s)
      飯田哲也(ワークショップ)
    • Organizer
      第143回日本獣医学会学術集会
    • Place of Presentation
      つくば
    • Related Report
      2007 Annual Research Report
  • [Presentation] 大腸菌におけるO抗原合成遺伝子群を含む水平伝播領域の解析-O55からO157への入れ替わりとO55の伝播について.2007

    • Author(s)
      井口純、, 他
    • Organizer
      第11回腸管出血性大腸院感染症シンポジウム
    • Place of Presentation
      安曇野
    • Related Report
      2007 Annual Research Report
  • [Presentation] 病原性大腸菌におけるRTXの保有状況および溶血毒素としての可能性2007

    • Author(s)
      村瀬一典、, 他
    • Organizer
      第60回日本細菌学会九州支部総会
    • Place of Presentation
      長崎
    • Related Report
      2007 Annual Research Report
  • [Book] Bacterial Signal Transduction: network and drug targets(The Roles of Two-Component Regulatory Systems in Virulence of Pathogenic Escherichia coli and Shigella spp)2008

    • Author(s)
      Tobe, T.
    • Publisher
      Landes Bioscience
    • Related Report
      2009 Final Research Report
  • [Book] 医科細菌学改訂第4版(編集 : 笹川千尋、林哲也)2008

    • Author(s)
      林哲也
    • Total Pages
      430
    • Publisher
      南江堂
    • Related Report
      2008 Annual Research Report
  • [Book] Evolutionary Biology of Bacterial and Fungal Pathogens.(Edited by Baquero, F. et al., Genomic view on the evolution of enterohemorrhagic Escherichia coli, Chapter 34)2007

    • Author(s)
      Hayashi, T., Ooka, T., Ogura, Y., Asadulghani, Md
    • Publisher
      ASM Press.
    • Related Report
      2009 Final Research Report
  • [Book] Evolutionary Biology of Bacterial and Fungal Pathogens2007

    • Author(s)
      Hayashi T., et. al.
    • Total Pages
      622
    • Publisher
      ASM Press. Washington, D.C.
    • Related Report
      2007 Annual Research Report
  • [Book] 細胞工学別冊「比較ゲノム学から読み解く生命システム」2007

    • Author(s)
      内山郁夫、林哲也
    • Total Pages
      196
    • Publisher
      秀潤社,東京
    • Related Report
      2007 Annual Research Report
  • [Book] 薬学領域の病原微生物学・感染症学・化学療法学2007

    • Author(s)
      林哲也
    • Total Pages
      575
    • Publisher
      廣川書店
    • Related Report
      2007 Annual Research Report
  • [Book] Bacterial Signal Transduction : network and drug targets (Landes Bioscience, Georgetown, TX)2007

    • Author(s)
      T.Tobe.
    • Publisher
      The Roles of Two-Component Regulatory Systems in Virulence of Pathogenic Escherichia coli and Shigella spp
    • Related Report
      2006 Annual Research Report
  • [Book] The Biology of Vibrios.2006

    • Author(s)
      T.Iida, K.Kurokawa
    • Publisher
      Comparative genomics : the genome configuration and the driving forces in the evolution of vibrios.(ASM Press)
    • Related Report
      2006 Annual Research Report
  • [Book] The Biology of Vibrios.2006

    • Author(s)
      T.Iida, et al.
    • Publisher
      Vibrio parahaemolyticus (ASM Press)
    • Related Report
      2006 Annual Research Report
  • [Book] シンプル微生物学 第4版2006

    • Author(s)
      飯田哲也(分担)
    • Total Pages
      409
    • Related Report
      2006 Annual Research Report
  • [Remarks] 商品化された製品:O157 IS-printing System (発売元:TOYOBO)

    • Related Report
      2009 Final Research Report
  • [Remarks] データベース/ソフトウェア:Escherichia coli O157:H7 Sakai genome database

    • URL

      http://genome.naist.jp/bacteria/o157/

    • Related Report
      2009 Final Research Report
  • [Patent(Industrial Property Rights)] 微生物の識別方法、及び該方法に使用するプライマー並びに識別キット2006

    • Inventor(s)
      大岡唯祐、林哲也
    • Industrial Property Rights Holder
      大岡唯祐、林哲也
    • Industrial Property Number
      2006-155279
    • Filing Date
      2006-06-02
    • Related Report
      2009 Final Research Report
  • [Patent(Industrial Property Rights)] 微生物の識別方法、及び該方法に使用するプライマー並びに識別キット2006

    • Inventor(s)
      大岡唯祐, 林哲也, 小椋義俊, 中山恵介, 黒川顕, 寺嶋淳, 渡邊治雄
    • Industrial Property Rights Holder
      大岡唯祐, 林哲也
    • Industrial Property Number
      2006-155279
    • Filing Date
      2006-06-02
    • Acquisition Date
      2006-06-13
    • Related Report
      2006 Annual Research Report

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Published: 2005-04-01   Modified: 2018-03-28  

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