• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Support for data analysis and sharing

Research Project

Project/Area Number 17020001
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionThe University of Tokyo

Principal Investigator

TAKAGI Toshihisa  The University of Tokyo, 大学院・新領域創成科学研究科, 教授 (30110836)

Co-Investigator(Kenkyū-buntansha) MORISHITA Shinichi  東京大学, 大学院・新領域創成科学研究科, 教授 (90292854)
KUHARA Satoru  九州大学, 大学院・農学研究院, 教授 (00153320)
MATSUDA Hideo  大阪大学, 大学院・情報科学研究科, 教授 (50183950)
KANEHISA Minoru  京都大学, 化学研究所, 教授 (70183275)
Project Period (FY) 2005 – 2009
Project Status Completed (Fiscal Year 2009)
Budget Amount *help
¥481,800,000 (Direct Cost: ¥481,800,000)
Fiscal Year 2009: ¥82,200,000 (Direct Cost: ¥82,200,000)
Fiscal Year 2008: ¥81,600,000 (Direct Cost: ¥81,600,000)
Fiscal Year 2007: ¥105,600,000 (Direct Cost: ¥105,600,000)
Fiscal Year 2006: ¥105,600,000 (Direct Cost: ¥105,600,000)
Fiscal Year 2005: ¥106,800,000 (Direct Cost: ¥106,800,000)
Keywords情報解析 / 表現型解析 / データベース / バイオインフォマティクス / ゲノム リシーケンス / 病原微生物解析 / ゲノムアノテーション / 疾患関連遺伝子解析 / ゲノムリシーケンス / 配列解析 / 発現解析 / 植物ゲノム解析
Research Abstract

The Support group was set up to publish the research outcomes brought by Four Resarch Areas promptly, in a form that is vital use to reseachers, by offering techinical assistance from expert groups of information processing, or physical and financial support needed for database release and maintenance. We accepted project applications twice a year (in the first and last half year), and we screened the applications in Information Analysis and Data Release Support Committee.
Projects sponsored by the Support group have been steadily publishing the databases.

Report

(6 results)
  • 2009 Annual Research Report   Final Research Report ( PDF )
  • 2008 Annual Research Report
  • 2007 Annual Research Report
  • 2006 Annual Research Report
  • 2005 Annual Research Report
  • Research Products

    (198 results)

All 2010 2009 2008 2007 2006 2005 Other

All Journal Article (99 results) (of which Peer Reviewed: 57 results) Presentation (21 results) Book (8 results) Remarks (70 results)

  • [Journal Article] A rat monoclonal antibody against the chromatin remodeling factor, CHD52010

    • Author(s)
      Yoshimura, S.
    • Journal Title

      Hybridoma 29(1)

      Pages: 63-66

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Production of a rat monoclonal antibody specific for myf52010

    • Author(s)
      Harada, A.
    • Journal Title

      Hybridoma 29(1)

      Pages: 59-62

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Generation of a rat monoclonal antibody specific for CHD22010

    • Author(s)
      Harada, A.
    • Journal Title

      Hybridoma (印刷中(掲載確定))

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Generation of a rat monoclonal antibody specific for CHD12010

    • Author(s)
      Harada, A.
    • Journal Title

      Hybridoma (印刷中(掲載確定))

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] MachiBase: a Drosophila melanogaster 5'-end mRNA transcription database2009

    • Author(s)
      Ahsan, B., Saito, T.L., Hashimoto, S.I., Muramatsu, K., Tsuda, M., Sasaki, A., Matsushima, K., Aigaki, T., Morishita, S.
    • Journal Title

      Nucleic Acids Research 37

    • Related Report
      2009 Final Research Report
  • [Journal Article] Heterogeneity of Arabidopsis core promoters revealed by high density TSS analysis2009

    • Author(s)
      Yamamoto, YY., Yoshitsugu, T., Sakurai, T., Seki, M., Shinozaki, K., Obokata, J.
    • Journal Title

      Plant J. 60

      Pages: 350-362

    • Related Report
      2009 Final Research Report
  • [Journal Article] Olfactory neural circuitry for attraction to amino acids revealed by transposon-mediated gene trap approach in zebrafish, Proc.2009

    • Author(s)
      Koide, T., Miyasaka, N., Morimoto, K., Asakawa, K., Urasaki, A., Kawakami, K., Yoshihara, Y.
    • Journal Title

      Natl. Acad. Sci. 106

      Pages: 9884-9889

    • Related Report
      2009 Final Research Report
  • [Journal Article] Afferent neurons of the zebrafish lateral line are strict selectors of hair-cell orientation2009

    • Author(s)
      Faucherre, A., Pujol-Marti, J., Kawakami, K., Lopez-Schier, H.
    • Journal Title

      PLoS ONE 4

    • Related Report
      2009 Final Research Report
  • [Journal Article] SNP HiTLink: a high-throughput linkage analysis system employing dense SNP data2009

    • Author(s)
      Fukuda, Y., Nakahara, Y., Date, H., Takahashi, Goto, J., Miyashita, A., Kuwano, R., Adachi, H., Nakamura, E., Tsuji, S.
    • Journal Title

      BMC Bioinformatics 10

      Pages: 121-121

    • Related Report
      2009 Final Research Report
  • [Journal Article] Gclust: trans-kingdom classification of proteins using automatic individual threshold setting2009

    • Author(s)
      Sato, N.
    • Journal Title

      Bioinformatics 25

      Pages: 599-605

    • Related Report
      2009 Final Research Report
  • [Journal Article] Efficient frequency-based de novo short read clustering for error trimming in next-generation sequencing2009

    • Author(s)
      Qu, W., Hashimoto, S., Morishita, S.
    • Journal Title

      Genome Research 19(7)

      Pages: 1309-1315

    • Related Report
      2009 Final Research Report
  • [Journal Article] Chromatin-Associated Periodicity in Genetic Variation Downstream of Transcriptional Start Sites2009

    • Author(s)
      Sasaki, S., Mello, C., Shimada, A., Nakatani, Y., Hashimoto, S., Ogawa, M., Matsushima, K., Gu, S.G., Kasahara, M., Ahsan, B., Sasaki, A., Saito, T., Suzuki, Y., Sugano, S., Kohara, Y., Takeda, H., Fire, A., Morishita, S.
    • Journal Title

      Science 323(5912)

      Pages: 401-404

    • Related Report
      2009 Final Research Report
  • [Journal Article] MachiBase: a Drosophila melanogaster 5'-end mRNA transcription database2009

    • Author(s)
      Ahsan, B., Saito, T., Hashimoto, S., Muramatsu, K., Tsuda, M., Sasaki, A., Matsushima, K., Aigaki, T., Morishita, S.
    • Journal Title

      Nucleic Acids Research 37

    • Related Report
      2009 Final Research Report
  • [Journal Article] High-resolution analysis of the 5'-end transcriptome using a next generation DNA sequencer2009

    • Author(s)
      Hashimoto, S., Qu, W., Ahsan, B., Ogoshi, K., Sasaki, A., Nakatani, Y., Lee, Y., Ogawa, M., Ametani, A., Suzuki, Y., Sugano, S., Lee, C.C., Nutter, R.C., Morishita, S., Matsushima, K.
    • Journal Title

      PLoS One 4(1)

    • Related Report
      2009 Final Research Report
  • [Journal Article] Robust and accurate recognition of veins in fruit fly wings2009

    • Author(s)
      Hatsuda, H.
    • Journal Title

      Proceedings of the 6th International Symposium on Image and Signal Processing and Analysis

      Pages: 146-151

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Efficient frequency-based denovo short read clustering for error trimming in next-generation sequencing2009

    • Author(s)
      Qu, W.
    • Journal Title

      Genome Research 19(7)

      Pages: 1309-1315

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Generation of a rat monoclonal antibody specific for Pax72009

    • Author(s)
      Harada, A.
    • Journal Title

      Hybridoma 28(6)

      Pages: 451-453

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Does ossification of the posterior longitudinal ligament affect the neurological outcome following traumatic cervical cord injury?2009

    • Author(s)
      Okada, S.
    • Journal Title

      Spine 34(11)

      Pages: 1148-1152

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Production of a rat monoclonal antibody against BRG12009

    • Author(s)
      Ohkawa, Y.
    • Journal Title

      Hybridoma 28(6)

      Pages: 463-466

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Generation of a rat monoclonal antibody specific for brm2009

    • Author(s)
      Okada, S.
    • Journal Title

      Hybridoma 28(6)

      Pages: 455-458

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Olfactory neural circuitry for attraction to amino acids revealed by transposon-mediated gene trap approach in zebrafish2009

    • Author(s)
      Koide, T.
    • Journal Title

      Proc.Natl.Acad.Sci. 106

      Pages: 9884-9889

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Transgenesis in zebrafish with the tol2 transposon system2009

    • Author(s)
      Suster, ML.
    • Journal Title

      Methods in Molecular Biology 561

      Pages: 41-63

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Transcriptional regulation of a myeloid-lineage specific gene lysozyme C during zebrafish myelopoiesis2009

    • Author(s)
      Kitaguchi, T.
    • Journal Title

      Mechanisms of Development 126

      Pages: 314-323

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Benomyl induction of brain aromatase and toxic effects in the zebrafish embryo2009

    • Author(s)
      Kim, D.J.
    • Journal Title

      Journal of Applied Toxicology 29(4)

      Pages: 289-294

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Analysis of genes and genome by the Tol2-mediated gene and enhancer trap methods2009

    • Author(s)
      Urasaki, A.
    • Journal Title

      Methods in Molecular Biology 546

      Pages: 85-102

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Transient and stable transgenesis using Tol2 transposon vectors2009

    • Author(s)
      Kikuta, H.
    • Journal Title

      Methods in Molecular Biology 546

      Pages: 69-84

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mechanism of development of ionocytes rich in vacuolar-type H(+)-ATPase in the skin of zebrafish larvae2009

    • Author(s)
      Esaki, M.
    • Journal Title

      Developmental Biology 329

      Pages: 116-129

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Heterogeneity of Arabidopsis core promoters revealed by high density TSS analysis2009

    • Author(s)
      Yamamoto, YY.
    • Journal Title

      Plant J. 60(2)

      Pages: 350-362

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Chromatin-associated periodicity in genetic variation downstream of transcriptional start sites2009

    • Author(s)
      Sasaki, S.
    • Journal Title

      Science 323(5912)

      Pages: 401-404

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] MachiBase : A drosophila melanogaster 5'-end mRNA transcription database2009

    • Author(s)
      Ahsan, B.
    • Journal Title

      Nucleic Acids Research 37 (Data base issue)

      Pages: 49-53

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] High-resolution analysis of the 5'-end transcriptome using a next generation DNA sequencer2009

    • Author(s)
      Hashimoto, S.
    • Journal Title

      PLoS One 4(1) Epub

      Pages: 4108-4108

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Recapitulation of zebrafish sncga expression pattern anc labeling the habenular complex in transgenic zebrafish using green fluorescent protein reporter gene2009

    • Author(s)
      Chen, YC.
    • Journal Title

      Developmental Dynamics 238

      Pages: 746-754

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Afferent neurons of the zebrafish lateral line are strict selectors of hair-cell orientation2009

    • Author(s)
      Faucherre, A.
    • Journal Title

      PLoS ONE 4

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A novel conserved evxl enhancer links spinal interneuron morphology and cis-regulation from fish to mammals2009

    • Author(s)
      Suster, ML.
    • Journal Title

      Developmental Biology 325

      Pages: 422-433

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Expression of H-RASV12 in a zebrafish model of Costellosyndrome causes cellular senescence in adult proliferating cells2009

    • Author(s)
      Santoriello, C.
    • Journal Title

      Disease models & Mechanisms 2

      Pages: 56-57

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] SNP HiTLink : a high-throughput linkage analysis system employing dense SNP data2009

    • Author(s)
      Fukuda, Y.
    • Journal Title

      BMC Bioinformatics (印刷中)(掲載確定)

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Association of HTRA1 mutations and familial ischemic cerebral small-vessel disease2009

    • Author(s)
      Hara, K.
    • Journal Title

      IN. Engl. J. Med. 360

      Pages: 1729-1739

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] ppdb, a plant promoter database2008

    • Author(s)
      Yamamoto, YY., Obokata, J.
    • Journal Title

      Nucleic Acids Res. 36

    • Related Report
      2009 Final Research Report
  • [Journal Article] DBTSS: database of transcription start sites, progress report 20082008

    • Author(s)
      Wakaguri, H., Yamashita, R., Suzuki, Y., Sugano, S., Nakai, K.
    • Journal Title

      Nucleic Acids Res 36

    • Related Report
      2009 Final Research Report
  • [Journal Article] Variant between CPT1B and CHKB associated with susceptibility to narcolepsy2008

    • Author(s)
      Miyagawa, T., Kawashima, M., Nishida, N., Ohashi, J., Kimura, R., Fujimoto, A., Shimada, M., Morishita, S., Shigeta, T., Lin, L., Hong, S-C., Faraco, J., Shin, Y-K., Jeong, J-H, Okazaki, Y., Tsuji, S., Honda, M., Honda, Y., Mignot, E., Tokunaga, K.
    • Journal Title

      Nature Genetics 40(11)

      Pages: 1324-1328

    • Related Report
      2009 Final Research Report
  • [Journal Article] UTGB/medaka: genomic resource database for medaka biology2008

    • Author(s)
      Ahsan, B., Kobayashi, D., Yamada, T., Kasahara, M., Sasaki, S., Saito, TL., Nagayasu, Y., Doi, K., Nakatani, Y., Qu, W., Jindo, T., Shimada, A., Naruse, K., Toyoda, A., Kuroki, Y., Fujiyama, A., Sasaki, T., Shimizu, A., Asakawa, S., Shimizu, N., Hashimoto, S., Yang, J, Lee, Y., Matsushima, K., Sugano, S., Sakaizumi, M., Narita, T., Ohishi, K., Haga, S., Ohta, F., Nomoto, H., Nogata, K., Morishita, T., Endo, T., Shin-I, T., Takeda, H., Kohara, Y., Morishita S.
    • Journal Title

      Nucleic Acids Res. 36

    • Related Report
      2009 Final Research Report
  • [Journal Article] The genome of a lepidopteran model insect, the silkworm Bombyx mori2008

    • Author(s)
      Kasahara, M.
    • Journal Title

      Insect Biochemistry and Molecular Biology 38(12)

      Pages: 1036-1045

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Variant between CPT1B and CHKB associated with susceptibility to narcolepsy2008

    • Author(s)
      Miyagawa, T.
    • Journal Title

      Nature Genetics 40(11)

      Pages: 1324-1328

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] EffiCient transposition of the To12 transposable element from a single-copy donor in zebrafish2008

    • Author(s)
      Urasaki, A.
    • Journal Title

      Proc. Natl. Acad. Sci. USA 105

      Pages: 19827-19832

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Transposition of the vertebrate To12 transposable element in Drosophila melanogaster2008

    • Author(s)
      Urasaki, A
    • Journal Title

      Gene 425

      Pages: 64-68

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] G2R Cre reporter transgenic zebrafish2008

    • Author(s)
      Yoshikawa, S.
    • Journal Title

      Developmental Dynamics 237

      Pages: 2460-2465

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Targeted gene expression by the Ga14-UAS system in zebrafish2008

    • Author(s)
      Asakawa, K.
    • Journal Title

      Development, Growth & Differentiation 50

      Pages: 391-399

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] UTGB/medaka: genomic resource database for medaka biology2008

    • Author(s)
      Ahsan, B. (Morishita, S.)
    • Journal Title

      Nucleic Acids Research 36 (Data base issue)

      Pages: 747-752

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Complete genome sequence of finegoldia magna, an anaerobic opportunistic pathogen2008

    • Author(s)
      Goto, T. (Kuhara, S.)
    • Journal Title

      DNA Research 15

      Pages: 39-47

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genome-wide analysis of chlamydophila pneumonia gene expression at the late stage of infection2008

    • Author(s)
      Miura, K. (Kuhara, S.)
    • Journal Title

      DNA Research 15

      Pages: 83-91

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Global regulation by horizontally transferred regulators establishes the pathogenicity of escherichia coli2008

    • Author(s)
      Abe, H. (Kuhara, S.)
    • Journal Title

      DNA Research 15(1)

      Pages: 25-38

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Comparative genomic analysis using microarray demonstrates a strong correlation between the presence of the 80-kilobase pathogenicity island and pathogenicity in Kanagawa phenomenon-positive Vibrio parahaemolyticus strains2008

    • Author(s)
      Izutsu, K. (Kuhara, S.)
    • Journal Title

      Infection and Immunity 76(3)

      Pages: 1016-1023

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A combination method of the tanimoto coefficient and proximity measure of random forest for compound activity prediction2008

    • Author(s)
      Kawamura, G. (Matsuda, H.)
    • Journal Title

      IPSJ Transactions on Bioinformatics 49(SIG5)

      Pages: 46-57

    • NAID

      110006684909

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A distributed-processing system for accelerating biological research using data-staging2008

    • Author(s)
      Kido, Y. (Matsuda, H.)
    • Journal Title

      IPSJ Transactions on Bioinformatics 49(SIG5)

      Pages: 58-64

    • NAID

      110006684910

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The repertoire of desaturases and elongases reveals fatty acidvariations in 56 eukaryotic genomes2008

    • Author(s)
      Hashimoto, K. (Kanehisa, M.)
    • Journal Title

      Journal of Lipid Research 49

      Pages: 183-191

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] KEGG for linking genomes to life and the environment2008

    • Author(s)
      Kanehisa, M.
    • Journal Title

      Nucleic Acids Research 36

      Pages: 480-484

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genetic analysis of craniofacial traits in the medaka2007

    • Author(s)
      Kimura, T., Shimada, A., Sakai, N., Mitani, H., Naruse, K., Takeda, H., Inoko, H., Tamiya, G., Shinya, M.
    • Journal Title

      Genetics 177

      Pages: 2379-2388

    • Related Report
      2009 Final Research Report
  • [Journal Article] Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes2007

    • Author(s)
      Kurokawa, K., Itoh, T., Kuwahara, T., Oshima, K., Toh, H., Toyoda, A., Takami, H., Morita, H., Sharma, VK, Srivastava, TP, Taylor, TD, Noguchi, H., Mori, H., Ogura, Y., Ehrlich, DS, Itoh, K., Takagi, T., Sakaki, Y., Hayashi, T., Hattori, M.
    • Journal Title

      DNA Res 14(4)

      Pages: 169-181

    • Related Report
      2009 Final Research Report
  • [Journal Article] Reconstruction of the Vertebrate Ancestral Genome Reveals Dynamic Genome Reorganization in Early Vertebrates2007

    • Author(s)
      Nakatani, Y., Takeda, H., Kohara, Y., Morishita, S.
    • Journal Title

      Genome Research 17(9)

      Pages: 1254-1265

    • Related Report
      2009 Final Research Report
  • [Journal Article] Reconstruction of highly heterogeneous gene-content evolution across the three domains of life2007

    • Author(s)
      Iwasaki, W. (Takagi, T.)
    • Journal Title

      Bioinformatics 23(13)

      Pages: 230-239

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] OReFiL: an online resource finder for life sciences2007

    • Author(s)
      Yamamoto, Y. (Takagi, T.)
    • Journal Title

      BMC Bioinformatics 8

      Pages: 287-287

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Comparative metagenomics revealed commonly enriched genesets in human gut microbiomes2007

    • Author(s)
      Kurokawa, K. (Takagi, T.)
    • Journal Title

      DNA Research 14(4)

      Pages: 169-181

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Intrinsic promoter activities of primary DNA sequences in the human genome2007

    • Author(s)
      Sakakibara, Y. (Takagi, T.)
    • Journal Title

      DNA Research 14(2)

      Pages: 71-77

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Biomedical knowledge navigation by literature clustering2007

    • Author(s)
      Yamamoto, Y. (Takagi, T.)
    • Journal Title

      Journal of Biomedical Informatics 40(2)

      Pages: 114-130

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Knowledge discovery based on an implicit and explicit conceptual network2007

    • Author(s)
      Koike, A. (Takagi, T.)
    • Journal Title

      Journal of the American Society for Information Science and Technology 58(1)

      Pages: 51-65

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The medaka draft genome and insights into vertebrate genomeevolution2007

    • Author(s)
      Kasahara, M. (Morishita, S.)
    • Journal Title

      Nature 447

      Pages: 714-719

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates2007

    • Author(s)
      Nakatani, Y. (Morishita, S.)
    • Journal Title

      Genome Research 17(9)

      Pages: 1254-1265

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Comprehensive analysis of distinctive polyketide and nonribosomal peptide structural motifs encoded in microbial genomes2007

    • Author(s)
      Minowa, Y. (Kanehisa, M.)
    • Journal Title

      Journal of Molecular Biology 368

      Pages: 1500-1517

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Systematic analysis of enzyme-catalyzed reaction patterns and prediction of microbial biodegradation pathways2007

    • Author(s)
      Oh, M. (Kanehisa, M.)
    • Journal Title

      Journal of Chemical Information and Modeling 47

      Pages: 1702-1712

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] KAAS: an automatic genome annotation and pathway reconstruction server2007

    • Author(s)
      Moriya, Y. (Kanehisa, M.)
    • Journal Title

      Nucleic Acids Research 35

      Pages: 182-185

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach2007

    • Author(s)
      Fujita, M. (Kanehisa, M.)
    • Journal Title

      BMC Bioinformatics 8

      Pages: 225-225

    • NAID

      120004770237

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Evolutionary history and functional implications of protein domains and their combinations in eukaryotes2007

    • Author(s)
      Itoh, M. (Kanehisa, M.)
    • Journal Title

      Genome Biology 8

      Pages: 121-121

    • NAID

      120004770238

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The commonality of protein interaction networks determined in neurodegenerative disorders (NDDs)2007

    • Author(s)
      Limviphuvadh, V. (Kanehisa, M.)
    • Journal Title

      Bioinformatics 23

      Pages: 2129-2138

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification of endocrine disruptor biodegradation by integration of structure-activity relationship with pathway analysis. Environ2007

    • Author(s)
      Kadowaki, T. (Kanehisa, M.)
    • Journal Title

      Science and Technology 41

      Pages: 7997-8003

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Knowledge discovery based on an implicit and explicit conceptual network2007

    • Author(s)
      Koike, A., (Takagi, T.)
    • Journal Title

      J. Am. Soc. Info. Sci. Tech. 58(1)

      Pages: 51-65

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Retrieving functionally similar bioinformatics workflows using TF-IDF filtering2007

    • Author(s)
      Seo, J., (Matsuda, H.)
    • Journal Title

      IPSJ Transactions on Bioinformatics 48 (SIG5)

      Pages: 20-29

    • NAID

      110006242959

    • Related Report
      2006 Annual Research Report
  • [Journal Article] MetaGene : prokaryotic gene finding from environmental genome shotgun sequences2006

    • Author(s)
      Noguchi, H., (Takagi, T.)
    • Journal Title

      Nucleic Acids Res. 34(19)

      Pages: 5623-5630

    • Related Report
      2006 Annual Research Report
  • [Journal Article] A large-scale full-length cDNA analysis to explore the budding yeast transcriptome2006

    • Author(s)
      Miura, F., (Morishita, S.)
    • Journal Title

      Proc. Natl. Acad. Sci. 103(47)

      Pages: 17846-17851

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Amoeba Join : overcoming structural fluctuations of XML data2006

    • Author(s)
      Saito, T., (Morishita, S.)
    • Journal Title

      Ninth International Workshop on the Web and Databases (WebDB 2006)

      Pages: 45-50

    • Related Report
      2006 Annual Research Report
  • [Journal Article] PrimerStation : a highly specific multiplex genomic PCR primer design server for the human genome2006

    • Author(s)
      Yamada, T., (Morishita, S.)
    • Journal Title

      Nucl. Acids Res. 34

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Gene subset selection in kernel-induced feature space2006

    • Author(s)
      Niijima, S., (Kuhara, S.)
    • Journal Title

      Pattern Recognition Letters 27

      Pages: 1884-1892

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Recursive gene selection based on maximum margin criterion : a comparis on with SVM-RFE2006

    • Author(s)
      Niijima, S., (Kuhara, S.)
    • Journal Title

      BMC Bioinformatics 7(543)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] EGassembler : online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments2006

    • Author(s)
      Masoudi-Nejad A., (Kanehisa, M.)
    • Journal Title

      Nucleic Acids Res. 34

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Event Ontology : A Pathway-Centric Ontology for Biological Processes2006

    • Author(s)
      Kushida, T.
    • Journal Title

      Pacific Symposium on Biocomputing 11

      Pages: 152-163

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Comparative Analysis of Chimpanzee and Human Y Chromosomes Unveils Complex Evolutionary Pathway2006

    • Author(s)
      Kuroki, Y.
    • Journal Title

      Nature Genetics 38

      Pages: 158-167

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Evaluation of Image Processing Programs for Accurate Measurement of Budding and Fission Yeast Morphology2006

    • Author(s)
      Suzuki, G.
    • Journal Title

      Curr Genet. 6

      Pages: 1-11

    • Related Report
      2005 Annual Research Report
  • [Journal Article] ALICE : An Algorithm to Extract Abbreviations from MEDLINE.2005

    • Author(s)
      Ao, H.
    • Journal Title

      Journal of American Medical Informatics Association 12(5)

      Pages: 576-586

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Reassembly and Interfacing Neural Models Registered on Biological Model Databases2005

    • Author(s)
      Ohtake, M.
    • Journal Title

      Genome Informatics Workshop

      Pages: 76-85

    • Related Report
      2005 Annual Research Report
  • [Journal Article] A Sentence Classification System for Multi-document Summarization in the Biomedical Domain2005

    • Author(s)
      Yamamoto, Y.
    • Journal Title

      In the Proc.of International Workshop on Biomedical Data Engineering

      Pages: 90-95

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Automatic Extraction of Gene/protein Biological Functions from Biomedical Text2005

    • Author(s)
      Koike, A.
    • Journal Title

      Bioinformatics 21

      Pages: 1227-1236

    • Related Report
      2005 Annual Research Report
  • [Journal Article] dsCheck : Highly Sensitive Off-target Search Software for dsRNA-mediated RNA Interference2005

    • Author(s)
      Naito, Y.
    • Journal Title

      Nucleic Acids Research 33(Web Server issue)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] High-Dimensional and Large-Scale Phenotyping of Yeast Mutants2005

    • Author(s)
      Ohya, Y.
    • Journal Title

      In the Proc.of Natl.Acad.Sci.USA. 102(52)

      Pages: 19015-19020

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Data Mining Tools for the Saccharomyces Cerevisiae Morphological Database2005

    • Author(s)
      Saito, T.L.
    • Journal Title

      Nucleic Acids Research 33(Web Server issue)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Accelerated Off-Target Search Algorithm for siRNA.2005

    • Author(s)
      Yamada, T.
    • Journal Title

      Bioinformatics 21(8)

      Pages: 1316-1324

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Multiclass Molecular Cancer Classification by Kernel Subspace Methods with Effective Kernel Parameter Selection2005

    • Author(s)
      Niijima, S.
    • Journal Title

      Journal of Bioinformatics and Computational Biology 3(5)

      Pages: 1071-1088

    • Related Report
      2005 Annual Research Report
  • [Journal Article] An OGSA-based Integration of Life Science Resources2005

    • Author(s)
      Kosaka, T.
    • Journal Title

      Methods of Information in Medicine 44(2)

      Pages: 257-261

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Knowledge Discovery Based on an Implicit and Explicit Conceptual Network

    • Author(s)
      Koike, A.
    • Journal Title

      Journal of the American Society for Information Science and Technology (in press)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Gene Subset Selection in Kernel-Iunduced Feature Space

    • Author(s)
      Niijima, S.
    • Journal Title

      Pattern Recognition Letters (in press)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] 遺伝子発現プロファイルを用いた遺伝子制御ネットワーク推定のためバイクラスタリングの応用

    • Author(s)
      瀧 浩平
    • Journal Title

      情報処理学会論文誌:数理モデル化と応用 (印刷中)

    • Related Report
      2005 Annual Research Report
  • [Presentation] Recent advances in the Tol2 transposon technology in zebrafish, 3rd Strategic Conference of Zebrafish Investigators2009

    • Author(s)
      Kawakami, K.
    • Organizer
      川上浩一
    • Place of Presentation
      Asilomar, USA.
    • Related Report
      2009 Final Research Report
  • [Presentation] Recent advances in the To12 transposon technology in zebrafish2009

    • Author(s)
      Kawakami, K.
    • Organizer
      3rd Strategic Conference of Zebrafish Investigators
    • Place of Presentation
      Asilomar, USA
    • Related Report
      2008 Annual Research Report
  • [Presentation] Chromatin-associated periodicity in genetic variation downstream of transcriptional start sites2008

    • Author(s)
      森下真一
    • Organizer
      第31回日本分子生物学会年会・第81回日本生化学会合同大会シンポジウム「超高速シーケンサーとバイオインフォマティクス」
    • Place of Presentation
      神戸
    • Year and Date
      2008-12-11
    • Related Report
      2009 Final Research Report
  • [Presentation] Chromatin-Associated Periodicity in Genetic Variation Downstream of Transcriptional Start Sites2008

    • Author(s)
      森下真一
    • Organizer
      第31回日本分子生物学会年会・第81回日本生化学会合同大会シンポジウム「超高速シーケンサーとバイオインフォマティクス」
    • Place of Presentation
      神戸
    • Year and Date
      2008-12-11
    • Related Report
      2008 Annual Research Report
  • [Presentation] 遺伝子末端領域のアミノ酸組成に基づいた微生物の系統解析2008

    • Author(s)
      麻田道雄、平川英樹、久原哲
    • Organizer
      第二回日本ゲノム微生物学会
    • Place of Presentation
      大阪大学
    • Related Report
      2007 Annual Research Report
  • [Presentation] 複数のマイクロアレイの発現データによるウェルシュ菌の共発現・逆相関遺伝子群のグルーピング2008

    • Author(s)
      大野真人、平川英樹、大谷郁、清水徹、久原哲
    • Organizer
      第二回日本ゲノム微生物学会
    • Place of Presentation
      大阪大学
    • Related Report
      2007 Annual Research Report
  • [Presentation] Comprehensive analysis of enzymatic reaction mechanisms basedon the EC classification and KEGG RPAIR database2007

    • Author(s)
      Shimizu, Y. (Kanehisa, M.)
    • Organizer
      The 2007 Annual Conference of Japanese Society for Bioinformatics (JSBi2007)
    • Place of Presentation
      横浜
    • Year and Date
      2007-12-17
    • Related Report
      2007 Annual Research Report
  • [Presentation] グラフ構造を用いた組織特異的な選択的スプライシングの解析手法2007

    • Author(s)
      瀬尾茂人、竹中要一、松田秀雄
    • Organizer
      日本分子生物学会第30回大会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2007-12-11
    • Related Report
      2007 Annual Research Report
  • [Presentation] Analysis of common substructures of metabolic compoundswithin the different organism groups2007

    • Author(s)
      Muto, A.(Kanehisa, M.)
    • Organizer
      The Seventh Annual International Workshopon Bioinformatics and Systems Biology2007(IBSB2007)
    • Place of Presentation
      東京
    • Year and Date
      2007-08-03
    • Related Report
      2007 Annual Research Report
  • [Presentation] An improved scoring scheme for predicting glycan structures from gene expression data, The Seventh Annual International Workshop on Bioinformatics and Systems Biology20072007

    • Author(s)
      Suga, A. (Kanehisa, M. )
    • Organizer
      IBSB2007
    • Place of Presentation
      東京
    • Year and Date
      2007-08-02
    • Related Report
      2009 Final Research Report
  • [Presentation] An improved scoring scheme for predicting glycan structures from gene expression data2007

    • Author(s)
      Suga, A.(Kanehisa, M.)
    • Organizer
      The Seventh Annual International Workshopon Bioinformatics and Systems Biology2007(IBSB2007)
    • Place of Presentation
      東京
    • Year and Date
      2007-08-02
    • Related Report
      2007 Annual Research Report
  • [Presentation] Efficient Integration of Structure Indexes of XML.2007

    • Author(s)
      Saito, T. L. and Morishita, S.
    • Organizer
      The 12th International Conference on Database Systems for Advanced Applications (DASFAA)
    • Place of Presentation
      Bangkok
    • Year and Date
      2007-04-11
    • Related Report
      2007 Annual Research Report
  • [Presentation] 複数のマイクロアレイの発現データを用いたウェルシュ菌のオペロンおよび共発現、逆相関している遺伝子群の解析2007

    • Author(s)
      大野真人、平川英樹、大谷郁、清水徹、久原哲
    • Organizer
      第30回日本分子生物学会年会、第80回日本生化学学会大会、合同大会
    • Place of Presentation
      パシフィコ横浜
    • Related Report
      2007 Annual Research Report
  • [Presentation] 二成分制御系に関わるセンサータンパク質とレギュレータータンパク質のドメイン構造に基づく分類と機能に関する解析2007

    • Author(s)
      金相 完、平川英樹、久原哲
    • Organizer
      第30回日本分子生物学会年会、第80回日本生化学学会大会、合同大会
    • Place of Presentation
      パシフィコ横浜
    • Related Report
      2007 Annual Research Report
  • [Presentation] KEGG DRUG structure mapから化学変換パターンの抽出2007

    • Author(s)
      重水 大智 (金久 實)
    • Organizer
      第30回分子生物学会年会・第80回日本生化学会大会(BMB2007)
    • Place of Presentation
      横浜
    • Related Report
      2007 Annual Research Report
  • [Presentation] パラログ遺伝子による代謝反応の基質多様性の解析2007

    • Author(s)
      田中 道廣(金久 實)
    • Organizer
      第30回分子生物学会年会・第80回日本生化学会大会(BMB2007)
    • Place of Presentation
      横浜
    • Related Report
      2007 Annual Research Report
  • [Presentation] DesaturaseとElongaseの網羅的探索及びその組合せによる脂肪酸予測2007

    • Author(s)
      橋本 浩介(金久 實)
    • Organizer
      第30回分子生物学会年会・第80回日本生化学会大会(BMB2007)
    • Place of Presentation
      横浜
    • Related Report
      2007 Annual Research Report
  • [Presentation] Analysis of tissue specific expression patterns of metabolic pathway2007

    • Author(s)
      Takarabe, M.(Kanehisa, M.)
    • Organizer
      The Seventh Annual International Workshopon Bioinformatics and Systems Biology2007(IBSB2007)
    • Place of Presentation
      東京
    • Related Report
      2007 Annual Research Report
  • [Presentation] Analysis of the relationship between EC classification and reaction representations in KEGG RPAIR database2007

    • Author(s)
      Shimizu, Y.(Kanehisa, M.)
    • Organizer
      The Seventh Annual International Workshopon Bioinformatics and Systems Biology2007(IBSB2007)
    • Place of Presentation
      東京
    • Related Report
      2007 Annual Research Report
  • [Presentation] KEGG as a glycome informatics resource2007

    • Author(s)
      Hashimoto, K.(Kanehisa, M.)
    • Organizer
      Gordon Research Conferences:Glycobiology
    • Place of Presentation
      Ventura, California, USA
    • Related Report
      2007 Annual Research Report
  • [Presentation] Prediction of glycan structures form gene expression databased on improved scoring scheme2007

    • Author(s)
      Suga, A. (Kanehisa, M.)
    • Organizer
      Gordon Research Conferences: Glycobiology
    • Place of Presentation
      Ventura, California, USA
    • Related Report
      2007 Annual Research Report
  • [Book] 生命研究への応用と開発が進むバイオデータベースとソフトウェア最前線(『実験医学』2008年4月増刊号)2008

    • Author(s)
      森下真一、阿久津達也編
    • Total Pages
      225
    • Publisher
      羊土社
    • Related Report
      2009 Final Research Report
  • [Book] 生命研究への応用と開発が進むバイオデータベースとソフトウェア最前線(『実験医学』2008年4月増刊号)2008

    • Author(s)
      森下真一, 阿久津達也編
    • Total Pages
      225
    • Publisher
      羊土社
    • Related Report
      2008 Annual Research Report
  • [Book] 医学生物学分野におけるシソーラスとテキストマイニング技術の開発(実験医学増刊号Vol.26, No.7)2008

    • Author(s)
      小池 麻子(高木利久)
    • Total Pages
      6
    • Publisher
      羊土社
    • Related Report
      2007 Annual Research Report
  • [Book] メダカゲノム解析に基づく脊椎動物ゲノム進化の推定(実験医学増刊号 Vo1.25, No.2)2007

    • Author(s)
      中谷 洋一郎, (森下真一)
    • Total Pages
      6
    • Publisher
      羊土社
    • Related Report
      2006 Annual Research Report
  • [Book] Large-scale genome sequence processing2006

    • Author(s)
      Kasahara, M. (Morishita, S. )
    • Total Pages
      248
    • Publisher
      Imperial College Press
    • Related Report
      2009 Final Research Report
  • [Book] Large-scale genome sequence processing2006

    • Author(s)
      Kasahara, M., (Morishita, S.)
    • Total Pages
      248
    • Publisher
      Imperial College Press
    • Related Report
      2006 Annual Research Report
  • [Book] 比較ゲノムを支える情報学 : 脊椎動物ゲノム進化を推定するロジック(細胞工学 Vo1.25, No.8)2006

    • Author(s)
      森下 真一
    • Total Pages
      6
    • Publisher
      秀潤社
    • Related Report
      2006 Annual Research Report
  • [Book] Genome Informatics 20052005

    • Author(s)
      Edited by Takagi, T. et al.
    • Total Pages
      293
    • Publisher
      Universal Academy Press, Inc.
    • Related Report
      2005 Annual Research Report
  • [Remarks] UTGB Drosophila [相垣敏郎]

    • URL

      http://machibase.gi.k.u-tokyo.ac.jp/

    • Related Report
      2009 Final Research Report
  • [Remarks] LipidBank [有田正規]

    • URL

      http://lipidbank.jp/

    • Related Report
      2009 Final Research Report
  • [Remarks] Metabolomics. JP [有田正規]

    • URL

      http://metabolomics.jp/

    • Related Report
      2009 Final Research Report
  • [Remarks] Metabolome. JP [有田正規]

    • URL

      http://www.metabolome.jp/

    • Related Report
      2009 Final Research Report
  • [Remarks] MassBank [有田正規]

    • URL

      http://www.massbank.jp/

    • Related Report
      2009 Final Research Report
  • [Remarks] Gene function HOmology Search Tool(GHOST) [伊藤隆司]

    • URL

      http://itolab.cb.k.u-tokyo.ac.jp/GHOST/GHOST.pl

    • Related Report
      2009 Final Research Report
  • [Remarks] Annotation Rating Tool(ART) [伊藤隆司]

    • URL

      http://itolab.cb.k.u-tokyo.ac.jp/ART/ART.pl

    • Related Report
      2009 Final Research Report
  • [Remarks] Acytostelium Gene Database(AcytoDB) [漆原秀子]

    • URL

      http://acyto.sequence.info/

    • Related Report
      2009 Final Research Report
  • [Remarks] 3C browser(公開準備中)[大川恭行]

    • Related Report
      2009 Final Research Report
  • [Remarks] SD-Score algorithm [大野欽司

    • URL

      http://www.med.nagoya-u.ac.jp/neurogenetics/SD_Score/sd_score.html

    • Related Report
      2009 Final Research Report
  • [Remarks] siRNA designer [大野欽司]

    • URL

      http://www.med.nagoya-u.ac.jp/neurogenetics/i_Score/i_score.html

    • Related Report
      2009 Final Research Report
  • [Remarks] Association Test for CNV ver. 1 [大橋順]

    • URL

      http://210.188.217.208:8081/cnv/jsp/index.jsp

    • Related Report
      2009 Final Research Report
  • [Remarks] ppdb: Plant Promoter Database [小保方潤一]

    • URL

      http://ppdb.gene.nagoya-u.ac.jp/

    • Related Report
      2009 Final Research Report
  • [Remarks] Firefox3 [金子周司]

    • URL

      http://lsd.pharm.kyoto-u.ac.jp/ja/download/

    • Related Report
      2009 Final Research Report
  • [Remarks] zTrap:Zebrafish Gene Trap and Enhancer Trap Database [川上浩一]

    • URL

      http://kawakami.lab.nig.ac.jp/ztrap/

    • Related Report
      2009 Final Research Report
  • [Remarks] Ortholog Group Management System [久原哲]

    • URL

      http://jamboree.grt.kyushu-u.ac.jp:9001/

    • Related Report
      2009 Final Research Report
  • [Remarks] STR検索ソフト[桑野良三]

    • URL

      http://ocean.cb.k.u-tokyo.ac.jp/str21/index.cgi

    • Related Report
      2009 Final Research Report
  • [Remarks] pub marker [桑野良三]

    • URL

      http://ocean.cb.k.u-tokyo.ac.jp/homocontig1/test.cgi

    • Related Report
      2009 Final Research Report
  • [Remarks] ゲノムフィニッシングプラットフォーム[小原雄治]

    • URL

      http://dolphin.lab.nig.ac.jp

    • Related Report
      2009 Final Research Report
  • [Remarks] CyanoClustサーバー[佐藤直樹]

    • URL

      http://cyanoclust.c.u-tokyo.ac.jp/

    • Related Report
      2009 Final Research Report
  • [Remarks] Gclustサーバー[佐藤直樹]

    • URL

      http://gclust.c.u-tokyo.ac.jp/

    • Related Report
      2009 Final Research Report
  • [Remarks] NIG Mouse Phenotype Database [城石俊彦]

    • URL

      http://molossinus.lab.nig.ac.jp/phenotype/index.html

    • Related Report
      2009 Final Research Report
  • [Remarks] NIG Mouse Genome Database [城石俊彦]

    • URL

      http://molossinus.lab.nig.ac.jp/msmdb/

    • Related Report
      2009 Final Research Report
  • [Remarks] MCTDB [新屋みのり]

    • URL

      http://medaka.cb.k.u-tokyo.ac.jp/mctdb/

    • Related Report
      2009 Final Research Report
  • [Remarks] DBTSS [菅野純夫]

    • URL

      http://dbtss.hgc.jp/

    • Related Report
      2009 Final Research Report
  • [Remarks] BifidoBase [鈴木徹]

    • URL

      http://gib.genes.nig.ac.jp/single/index.php?spid=Bado_ATCC15703

    • Related Report
      2009 Final Research Report
  • [Remarks] BifidoBase [鈴木徹]

    • URL

      http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=16321

    • Related Report
      2009 Final Research Report
  • [Remarks] Fluorome [園池公毅]

    • URL

      http://www.photosynthesis.jp/fluorome/

    • Related Report
      2009 Final Research Report
  • [Remarks] proGENA [高木利久]

    • URL

      http://gena.ontology.ims.u-tokyo.ac.jp:8081/progena/progena.php

    • Related Report
      2009 Final Research Report
  • [Remarks] MOV (Multi Ontology Viewer) [高木利久]

    • URL

      http://gena.ontology.ims.u-tokyo.ac.jp:8081/mov/

    • Related Report
      2009 Final Research Report
  • [Remarks] BioTermNet [高木利久]

    • URL

      http://btn.ontology.ims.u-tokyo.ac.jp/

    • Related Report
      2009 Final Research Report
  • [Remarks] PRIME [高木利久]

    • URL

      http://prime.ontology.ims.u-tokyo.ac.jp:8081/

    • Related Report
      2009 Final Research Report
  • [Remarks] Data Collector for Auto Annotation on Microbial Genomes [津田雅孝]

    • URL

      http://www.burkholderia.net/

    • Related Report
      2009 Final Research Report
  • [Remarks] WorTS (Worm TS Mutant Database) [中村邦明]

    • URL

      http://worts.biken.osaka-u.ac.jp/

    • Related Report
      2009 Final Research Report
  • [Remarks] ヒト腸内細菌叢メタゲノムデータ[服部正平]

    • URL

      http://metagenome.jp/

    • Related Report
      2009 Final Research Report
  • [Remarks] Kyoto Chlamydomonas Genome Database (KCGD) [藤山秋佐夫]

    • URL

      http://chlamy.pmb.lif.kyoto-u.ac.jp/chlamybase/

    • Related Report
      2009 Final Research Report
  • [Remarks] Acytosterium Genome Database [藤山秋佐夫]

    • URL

      http://acyto.sequence.info/

    • Related Report
      2009 Final Research Report
  • [Remarks] Chemical Compound Classification Database: Sclion [松田秀雄]

    • URL

      http://sclion.ics.es.osaka-u.ac.jp

    • Related Report
      2009 Final Research Report
  • [Remarks] MuSICA2 [森下真一]

    • URL

      http://musica.gi.k.u-tokyo.ac.jp/

    • Related Report
      2009 Final Research Report
  • [Remarks] Efficient frequency-based de novo short-read clustering for error trimming in next-generation sequencing [森下真一]

    • URL

      http://mlab.cb.k.u-tokyo.ac.jp/~quwei/DeNovoShortReadClustering/

    • Related Report
      2009 Final Research Report
  • [Remarks] UTGB medaka [森下真一]

    • URL

      http://utgenome.org/UTGBMedaka/

    • Related Report
      2009 Final Research Report
  • [Remarks] MachiBase [森下真一]

    • URL

      http://machibase.gi.k.u-tokyo.ac.jp/

    • Related Report
      2009 Final Research Report
  • [Remarks] UTGB (yeast) [森下真一]

    • URL

      http://yeast.utgenome.org/

    • Related Report
      2009 Final Research Report
  • [Remarks] PrimerStation [森下真一]

    • URL

      http://ps.cb.k.u-tokyo.ac.jp/

    • Related Report
      2009 Final Research Report
  • [Remarks] dsCheck [森下真一]

    • URL

      http://dscheck.rnai.jp/

    • Related Report
      2009 Final Research Report
  • [Remarks] siDirect [森下真一]

    • URL

      http://design.rnai.jp/

    • Related Report
      2009 Final Research Report
  • [Remarks] Full-Malaria/Parasites and Full-Arthropods: databases of full-length cDNAs of parasites and arthropods, update 2009 [渡辺純一]

    • URL

      http://fullmal.hgc.jp/

    • Related Report
      2009 Final Research Report
  • [Remarks] Full-Malaria: an enlarged database for comparative studies of full-length cDNAs of malaria parasites, Plasmodium species [渡辺純一]

    • URL

      http://fullmal.ims.u-tokyo.ac.jp/

    • Related Report
      2009 Final Research Report
  • [Remarks] Comparasite: a database for comparative study of transcriptomes of parasites defined by full-length cDNAs [渡辺純一]

    • URL

      http://fullmal.hgc.jp/comp_index.html

    • Related Report
      2009 Final Research Report
  • [Remarks] 「イネ品種改良が加速名大がプロモーターをデータベース化」、中日新聞朝刊、2007年8月10日[小保方潤一]

    • Related Report
      2009 Final Research Report
  • [Remarks] 「シロイヌナズナやイネのプロモーター名大が機能配列DB化」、日刊工業新聞、2007年8月10日[小保方潤一]

    • Related Report
      2009 Final Research Report
  • [Remarks] Kyoto Chlamydomonas Genome Database(KCGD)(藤山秋佐夫)(クラミドモナス研究者コミュニティのみに公開中)

    • URL

      http://chlamy.pmb.lif.kyoto-u.ac.jp/chlamybase/

    • Related Report
      2009 Annual Research Report
  • [Remarks] Acytosterium Genome Database(藤山秋佐夫)(粘菌研究者コミュニティのみに公開中)

    • URL

      http://acyto.sequence.info/

    • Related Report
      2009 Annual Research Report
  • [Remarks] MuSICA2(森下真一)

    • URL

      http://musica.gi.k.u-tokyo.ac.jp/

    • Related Report
      2009 Annual Research Report
  • [Remarks] ppdb:Plant Promoter Database(小保方潤一)

    • URL

      http://ppdb.gene.nagoya-u.ac.jp

    • Related Report
      2009 Annual Research Report
  • [Remarks] NIG Mouse Genome Database(城石俊彦)

    • URL

      http://molossinus.lab.nig.ac.jp/msmdb/

    • Related Report
      2009 Annual Research Report
  • [Remarks] Full-Malaria/Parasites and Full-Arthropods : databases of full-length cDNAs of parasites and arthropods, update 2009(渡辺純一)

    • URL

      http://fullmal.hgc.jp

    • Related Report
      2009 Annual Research Report
  • [Remarks] SD-Score algorithm : 5'splice siteのスプライシング異常予測のためのweb tool(大野欽司)

    • URL

      http://www.med.nagoya-u.ac.jp/neurogenetics/SD-Score/sd_score.html

    • Related Report
      2008 Annual Research Report
  • [Remarks] siRNA designer : 効率的なsiRNA設計のためのweb tool(大野欽司)

    • URL

      http://www.med.nagoya-u.ac.jp/neurogenetics/i_Score/i_score.html

    • Related Report
      2008 Annual Research Report
  • [Remarks] NIG Mouse Phenotype Database : マウス表現型データベース(城石俊彦)

    • URL

      http://molossinus.lab.nig.ac.jp/phenotype/index.html

    • Related Report
      2008 Annual Research Report
  • [Remarks] MachiBase : ショウジョウバエの転写開始点に関し世界最大の情報量を提供するゲノムブラウザ(森下真一)

    • URL

      http://machibase.gi.k.u-tokyo.ac.jp/

    • Related Report
      2008 Annual Research Report
  • [Remarks] zTrap : GFP発現情報管理システムとトラップ遺伝子同定システムの研究室内運用及びGFP発現情報と遺伝子情報の外部からの閲覧(川上浩一)

    • URL

      http://kawakami.lab.nig.ac.jp/ztrap/

    • Related Report
      2008 Annual Research Report
  • [Remarks] ・BioTermNet:明示的/潜在的な概念間の関係性のネットワークの可視化

    • URL

      http://btn.ontology.ims.u-tokyo.ac.jp/

    • Related Report
      2007 Annual Research Report
  • [Remarks] ・OReFiL:インターネット上のデータベースやツールなどの検索システム

    • URL

      http://orefil.dbcls.jp/

    • Related Report
      2007 Annual Research Report
  • [Remarks] ・メダカゲノムブラウザー

    • URL

      http://medaka.utgenome.org/

    • Related Report
      2007 Annual Research Report
  • [Remarks] ・出芽酵母ゲノムブラウザー

    • URL

      http://yeast.utgenome.org/

    • Related Report
      2007 Annual Research Report
  • [Remarks] ・siRNA設計:

    • URL

      http://design.rnai.jp/

    • Related Report
      2007 Annual Research Report
  • [Remarks] ・出芽酵母表現型解析

    • URL

      http://scmd.gi.k.u-tokyo.ac.jp/

    • Related Report
      2007 Annual Research Report
  • [Remarks] ・Multiplex Genomic PCR design

    • URL

      http://ps.cb.k.u-tokyo.ac.jp/

    • Related Report
      2007 Annual Research Report
  • [Remarks] ・KEGGデータベース

    • URL

      http://www.genome.jp/kegg/

    • Related Report
      2007 Annual Research Report

URL: 

Published: 2005-04-01   Modified: 2018-03-28  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi