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Mechanism of translation-coupled mRNA decay

Research Project

Project/Area Number 17026004
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionNagoya City University

Principal Investigator

HOSHINO Shinichi  Nagoya City University, Graduate School of Pharmaceutical Sciences, Professor (40219168)

Project Period (FY) 2005 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥14,200,000 (Direct Cost: ¥14,200,000)
Fiscal Year 2006: ¥7,100,000 (Direct Cost: ¥7,100,000)
Fiscal Year 2005: ¥7,100,000 (Direct Cost: ¥7,100,000)
Keywordsgenetics / gene expression / nucleic acids / enzyme
Research Abstract

In this study, we have investigated the initiation mechanism of mRNA decay. Control of mRNA decay is a fundamentally important step in determining the amount of protein produced from the mRNA by translation, and mRNA decay is intimately linked to and regulated by translation. In eukaryotes, decay of most mRNAs is initiated by shortening of the poly(A)-tail at the 3' end, referred to as deadenylation. Deadenylation is the first and rate-limiting step and also the most efficient step in controlling mRNA decay. Two major deadenylase complexes, Caf1-Ccr4 and Pan2-Pan3, play central roles in this process. However, the molecular mechanism triggering deadenylation remained elusive. We previously showed that translation termination factor eRF3 interacts with poly(A) binding protein (PABPC1) through its N-domain and that eRF3 regulates the initiation of mRNA decay at the poly(A) tail shortening step through the interaction with PABPC1 in a manner coupled to translation termination. Thus, transl … More ation termination triggers mRNA decay. Here we examined the mechanism of mRNA deadenylation and obtained evidence fir a molecular interplay between translation termination factor eRF3 and mRNA deadenylases. We have demonstrated that eRF3-mediated deadenylation is catalyzed by both of the two major mRNA deadenylase complexes, Caf1-Ccr4 and Pan2-Pan3, in yeast and humans. Interestingly, translation termination complex eRF1-eRF3, Pan2-Pan3 and Caf1-Ccr4 competitively bind to the PABC domain of PABPC1. In each complex, eRF3, Pan3 and Tob, respectively, mediate PABPC1-binding. The PAM2 motifs found in both eRF3 and the two deadenylase complexes are responsible both for their binding to PABPC1 and for mRNA deadenylation. The termination complex and the deadenylase complex are exchanged on PABPC1 in a translation-dependent manner. Recruitment of the two deadenylase complexes to PABPC1 leads to the activation of both enzymes. From these results, we suggest a mechanism of mRNA deadenylation by Pan2-Pan3 and Caf1-Ccr4 in cooperation with eRF3 and PABPC1. Less

Report

(3 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • Research Products

    (37 results)

All 2008 2007 2006 2005 2002

All Journal Article (15 results) (of which Peer Reviewed: 4 results) Presentation (22 results)

  • [Journal Article] Mechanism of mRNA deadenylation : evidence for a molecular interplaybetween translation termination factor eRF3 and mRNA deadenylases.2007

    • Author(s)
      Funakoshi, Y., Doi, Y., Hosoda, N., Uchida, N., Osawa, M., Shimada, I., Tsujimoto, M., Suzuki, T., Katada, T., Hoshino, S.
    • Journal Title

      Genes & Development 21

      Pages: 3135-3148

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] LARK activates posttranscriptional expression of an essential mammalian clock protein, PERIOD1.2007

    • Author(s)
      Kojima, S., Matsumoto, K., Hirose, M., Shimada, M., Nagano, M., Shigeyoshi, Y., Hoshino, S., Tei, K., Saigo, K., Green, CB., Sakaki, Y., Tei, H
    • Journal Title

      Proc. Natl. Acad. Sci 104

      Pages: 1859-1864

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Mechanism of mRNA deadenylation : evidence for a molecular interplay between translation termination factor eRF3 and mRNA deadenylases.2007

    • Author(s)
      Funakoshi, Y., Doi, Y., Hosoda, N., Uchida, N., Osawa, M., Shimada, I., Tsujimoto, M., Suzuki, T., Katada, T., Hoshino, S.
    • Journal Title

      Genes Dev 21

      Pages: 3135-3148

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] LARK activates posttranscriptional expression of an essential mammalian clock protein, PERIOD1.2007

    • Author(s)
      Kojima, S., Matsumoto, K., Hirose, M., Shimada, M., Nagano, M., Shigeyoshi, Y., Hoshino, S., Ui-Tei, K., Saigo, K., Green, C. B., Sakaki, Y., Tei, H.
    • Journal Title

      Proc Natl Acad Sci U S A 104

      Pages: 1859-1864

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] LARK activates posttranscriptional expression of an essential mammalian clock protein, PERIOD1.2007

    • Author(s)
      Kojima, S., Matsumoto, K., Hirose, M., Shimada, M., Nagano, M., Shigeyoshi, Y., Hoshino, S., Tei, K., Saigo, K., Green, CB., Sakaki, Y., Tei, H
    • Journal Title

      Proc.Natl.Acad.Sci. 104

      Pages: 1859-1859

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF)to the exon junction complex triggers Upf1 phosphorylation and nonsense・mediatedmRNA decay.2006

    • Author(s)
      Kashima, I., Yamashita, A., Izumi, N., Kataoka, N., Morishita, R., Hoshino, S., Ohno, M., Dreyfuss, G., Ohno, S
    • Journal Title

      Genes & Development 20

      Pages: 355-367

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] The decapping enzyme Dcp1 participates in translation termination through its interaction with the release factor eRF3 in budding yeast.2006

    • Author(s)
      Kofuji, S., Sakuno, T., Takahashi, S., Araki, Y., Doi, Y., Hoshinoi, S., Katada, T.
    • Journal Title

      Biochem Biophys Res Commun 344

      Pages: 547-553

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] The decapping enzyme Dcpl participates in translation termination through its interaction with the release factor eRF3 in budding yeast.2006

    • Author(s)
      Kofuji, S., Sakuno, T., Takahashi, S., Araki, Y., Doi, Y., Hoshino, S., Katada, T.
    • Journal Title

      Biochem Biophys Res Commun 344

      Pages: 547-553

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay.2006

    • Author(s)
      Kashima, I., Yamashita, A., Izumi, N., Kataoka, N., Morishita, R., Hoshino, S., Ohno, M., Dreyfuss, G., Ohno, S.
    • Journal Title

      Genes Dev 20

      Pages: 355-367

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] The decapping enzyme Dcp1 participates in translatio termination through its interaction with the release factor eRF3 in budding yeast.2006

    • Author(s)
      Kofuji, S., Sakuno, T., Takahashi, S., Araki, Y., Doi, Y., Hoshino, S., Katada, T
    • Journal Title

      Biochem.Biophys.Res.Commun. 344

      Pages: 547-547

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upfl phosphorylation and nonsense-mediated mRNA decay.2006

    • Author(s)
      Kashima, I., Yamashita, A., Izumi, N., Kataoka, N., Morishita, R., Hoshino, S., Ohno, M., Dreyfuss, G., Ohno, S
    • Journal Title

      Genes & Development 20

      Pages: 355-355

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay2006

    • Author(s)
      I.Kashima A.Yamashita, N.Izumi N.Kataoka, R.Morishita, S.Hoshino, M.Ohno, G.breyfuss, S.Ohno
    • Journal Title

      Genes & Development 20

      Pages: 355-367

    • Related Report
      2005 Annual Research Report
  • [Journal Article] 真核生物におけるmRNA分解制御の分子機構2005

    • Author(s)
      船越佑司, 星野真一
    • Journal Title

      実験医学 23

      Pages: 1902-1907

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary 2005 Annual Research Report
  • [Journal Article] 真核生物における mRNA 分解制御の分子機構2005

    • Author(s)
      船越佑司, 星野真一
    • Journal Title

      実験医学 23

      Pages: 1902-1907

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] のmRNA動態を制御する新規Gタンパク質ファミリー2002

    • Journal Title

      実験医学 20

      Pages: 150-157

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] Mechanism of mRNA deadenylation : evidence for a molecular interplay between translationtermination factor eRF3 and mRNA deadenylases.2008

    • Author(s)
      Yuji Funakoshi, Yusuke Doi, NaoHosoda, Naoyuki Uchida, MasafumiTsujimoto, Shin-ichi Hoshino
    • Organizer
      Pan-Pacific International Partnership Conference on Pharmaceuti cal and Life Sciences (The 4th US-Japan Joint Conference)
    • Place of Presentation
      Nagoya, Japan
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] Mechanism of mRNA deadenylation : evidence for a molecular interplay between translation termination factor eRF3 and mRNA deadenylases.2008

    • Author(s)
      Yuji Funakoshi, Yusuke Doi, Nao Hosoda, Naoyuki Uchida, Masafumi Tsujimoto, Shin-ichi Hoshino
    • Organizer
      Pan-Pacific International Partnership Conference on Pharmaceutical and Life Sciences (The 4th US-Japan Joint Conference)
    • Place of Presentation
      Nagoya, Japan
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] eRF3/GSPTを介した翻訳終結と共役したmRNA分解制御機構の解析2007

    • Author(s)
      船越祐二, 細田直, 辻本雅文, 星野真一
    • Organizer
      分子生物学会第7回春期シンポジウム
    • Place of Presentation
      淡路夢舞台国際会議場
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] 真核生物mRNA分解開始機構の解析2006

    • Author(s)
      星野真一
    • Organizer
      日本分子生物学会2006フォーラム
    • Place of Presentation
      名古屋国際会議場
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] 熱ショック蛋白質SsalはNMD (Nonsense-mediated mRNA Decay)経路活性化に必要である2006

    • Author(s)
      高橋真也, 星野真一, 堅田利明
    • Organizer
      日本分子生物学会2006フォーラム
    • Place of Presentation
      名古屋国際会議場
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] Larkによる時計遺伝子Period 1の転写後発現制御機構の解析2006

    • Author(s)
      松本健, 小島志保子, 廣瀬松美, 長野護, 重吉康史, 星野真一, 程肇
    • Organizer
      日本分子生物学会2006フォーラム
    • Place of Presentation
      名古屋国際会議場
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] Structural Characterization of PABP Multimerization on Poly(A)Tail.2006

    • Author(s)
      Shunsuke Imai, Masanori Osawa, Shin-ichi Hoshino, Toshiaki Katada, Ichio Shimada
    • Organizer
      RNA 2006 Izu “Functional RNAs and Regulatory Machinety".
    • Place of Presentation
      Izu, Japan
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] Structural Characterization of PABP Multimerization on Poly(A)Tail.2006

    • Author(s)
      Shunsuke Imai, Masanori Osawa, Shin-ichi Hoshino, Toshiaki Katada, lchio Shimada
    • Organizer
      Sapporo Conference 2006
    • Place of Presentation
      Sapporo, Japan
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] Characterization of Multimerization Mechanism of PABP on Poly(A)Tail.2006

    • Author(s)
      Shunsuke Imai, Masanori Osawa, Shin-ichi Hoshino, Toshiaki Katada, Ichia Shimada
    • Organizer
      20th IUBMB International Congress of Biochemistry and Molecular Biology.
    • Place of Presentation
      Kyoto, Japan
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] The heat Shock Protein Ssalp is involved in NMD (Nonsense-mediated mRNA Decay)Pathway through Direct Interaction with mRNA in Saccharomyces cerevisiae.2006

    • Author(s)
      Shinya Takahashi, Shin-ichi Hoshino, Kenji Kontani, Toshiaki Katada
    • Organizer
      20th IUBMB International Congress of Biochemistry and Molecular Biology・
    • Place of Presentation
      Kyoto, Japan
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] Eukaryotic Translation Termination Factor GSPT/eRF3 Recognizes PABP with Chemical Echange Using Two Overlapping Motifs.2006

    • Author(s)
      Masanori Osawa, Tamiji Nakanishi, Shinishi Hoshino, Toshiaki Katada, IchiO Shimada
    • Organizer
      RNA 2006 Izu “Functional RNAs and Regulatory Machinery".
    • Place of Presentation
      Izu, Japan
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] 翻訳終結と共役したmRNA分解制御機構の解析2006

    • Author(s)
      星野真一
    • Organizer
      特定領域研究「RNA情報発現系の時空間ネットワーク」第4回合同班会議
    • Place of Presentation
      宮崎
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] Larkによる時計遺伝子Period1の転写後発現制御機構の解析2006

    • Author(s)
      松本健, 小島志保子, 廣瀬松美, 長野護, 重吉康史, 星野真一, 程肇
    • Organizer
      日本分子生物学会2006フォーラム
    • Place of Presentation
      名古屋国際会議場
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] Structural Characterization of PABP Multimerization on Poly(A) Tail.2006

    • Author(s)
      Shunsuke Imai, Masanori Osawa, Shin-ichi Hoshino, Toshiaki Katada, Ichia Shimada
    • Organizer
      RNA 2006 Izu Functional RNAs and Regulatory Machinery.
    • Place of Presentation
      Izu, Japan
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] Structural Characterization of PABP Multimerization on Poly(A) Tail.2006

    • Author(s)
      Shunsuke Imai, Masanori Osawa, Shin-ichi Hoshino, Toshiaki Katada, Ichio Shimada
    • Organizer
      Sapporo Conference 2006
    • Place of Presentation
      Sapporo, Japan
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] Characterization of Multimerization Mechanism of PABP on Poly(A) Tail.2006

    • Author(s)
      Shunsuke Imai, Masanori Osawa, Shin-ichi Hoshino, Toshiaki Katada, Ichia Shimada
    • Organizer
      20th IUBMB International Congress of Biochemistry and Molecular Biology.
    • Place of Presentation
      Kyoto, Japan
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] The heat Shock Protein Ssalp is involved in NMD(Nonsense-mediated mRNA Decay) Pathway through Direct Interaction with mRNA in Saccharomyces cerevisiae.2006

    • Author(s)
      Shinya Takahashi, Shin-ichi Hoshino, Kenji Kontani, Toshiaki Katada
    • Organizer
      20th IUBMB International Congress of Biochemistry and Molecular Biology.
    • Place of Presentation
      Kyoto, Japan
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] Eukaryotic Translation Termination Factor GSPT/eRF3 Recognizes PABP with Chemical Exchange Using Two Overlapping Motifs.2006

    • Author(s)
      Masanori Osawa, Tamiji Nakanishi, Shinishi Hoshino, Toshiaki Katada, Ichio Shimada
    • Organizer
      RN A2006 Izu Functional RNAs and Regulatory Machinery.
    • Place of Presentation
      Izu, Japan
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] NMD (Nonsense-Mediated mRNA Decay)経路に介在する新規制御因子の探索2005

    • Author(s)
      高橋真也, 星野真一, 堅田利明
    • Organizer
      第28回日本分子生物学会年会
    • Place of Presentation
      福岡
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] The Association between the initial SMG-I-Upf1 complex and exon junction complex on mRNP is required for the SMG-1-mediated phosphorylation of Upf1 during Nonsense-mediated mRNA decay2005

    • Author(s)
      Isao Kashima, Akio Yamashita, Natsuko Izumi, Naoyuki Kataoka, Shinichi Hoshino, Ryou Morishita, Shigeo Ohno
    • Organizer
      第28回日本分子生物学会年会
    • Place of Presentation
      福岡
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] 酵母eRF3/GSPTを介した翻訳終結と共役したmRNA分解機構の解析2005

    • Author(s)
      船越祐司, 辻本雅文, 星野真一
    • Organizer
      第28回日本分子生物学会年会
    • Place of Presentation
      福岡
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] TheAssociation between the initial SMG-1-Upf1 complex and exon junction complex on mRNP is required for the SMG-1-mediatedphosphoiylation ofUpfl during Nonsense-mediated mRNA decay2005

    • Author(s)
      Isao Kashima, Akio Yamashita, Natsuko Izumi, Naoyuki Kataoka, Shinichi Hoshino, Ryou Morishita, Shigeo Ohno
    • Organizer
      第28回日本分子生物学会年会
    • Place of Presentation
      福岡
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary

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Published: 2005-04-01   Modified: 2018-03-28  

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