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Mechanism for regulation of DECODE complexes in gene activation

Research Project

Project/Area Number 17054033
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionYokohama City University

Principal Investigator

OGATA Kazuhiro  Yokohama City University, 医学研究科, 教授 (90260330)

Co-Investigator(Kenkyū-buntansha) 佐藤 光  横浜市立大学, 医学研究科, 助教 (90300962)
椎名 政昭  横浜市立大学, 医学研究科, 助教 (30347299)
浜田 恵輔  横浜市立大学, 医学研究科, 助教 (00344052)
Co-Investigator(Renkei-kenkyūsha) SHIINA Masaaki  横浜市立大学, 医学部, 助教 (30347299)
HAMADA Keisuke  横浜市立大学, 医学部, 助教 (00344052)
SATO Ko  横浜市立大学, 医学部, 助教 (90300962)
Project Period (FY) 2005 – 2009
Project Status Completed (Fiscal Year 2009)
Budget Amount *help
¥105,600,000 (Direct Cost: ¥105,600,000)
Fiscal Year 2009: ¥21,000,000 (Direct Cost: ¥21,000,000)
Fiscal Year 2008: ¥21,000,000 (Direct Cost: ¥21,000,000)
Fiscal Year 2007: ¥21,000,000 (Direct Cost: ¥21,000,000)
Fiscal Year 2006: ¥21,000,000 (Direct Cost: ¥21,000,000)
Fiscal Year 2005: ¥21,600,000 (Direct Cost: ¥21,600,000)
Keywords転写因子 / タンパク質-核酸複合体 / Ets1,Runx1,エンハンサー / 化学修飾 / 連携研究者 / 転写制御因子 / エンハンソソーム / Runx1 / Ets1 / ヒストンシャペロン / クロマチンリモデリング / エンハンセオソーム / ヒストンシヤペロン / リン酸化 / MeCP2
Research Abstract

Multiple transcription factors (TFs) regulate transcription by forming TFs-DNA complexes. A cell signaling causes chemical modification of transcription factors, which modulates transcriptional activities. Besides, effect of chemical modification of transcription factors on their activity in the context of TFs-DNA complexes, however, is largely unknown. In this sturdy, we showed that the phosphorylation of a transcription factor Ets1 "differentially" modulates Ets1-containing TFs-DNA complexes. In addition, we clarified the underlying mechanism by which the selective modulation of Ets1-containing TFs-DNA complexes is achieved using NMR analyses of allosteric regulation of Runx1 by CBFβ and crystallographic analyses of multiprotein-DNA complex comprised of Ets1, Runx1 and CBFβ formed on the TCRα gene enhancer.

Report

(6 results)
  • 2009 Annual Research Report   Final Research Report ( PDF )
  • 2008 Annual Research Report
  • 2007 Annual Research Report
  • 2006 Annual Research Report
  • 2005 Annual Research Report
  • Research Products

    (49 results)

All 2011 2010 2009 2008 2007 2006 2005 Other

All Journal Article (20 results) (of which Peer Reviewed: 17 results) Presentation (21 results) Book (7 results) Remarks (1 results)

  • [Journal Article] NLRP4 negatively regulates autophagic processes through an association with Beclin12011

    • Author(s)
      Jounai N, Kobiyama K, Shiina M, Ogata K, Ishii KJ, Takeshita F.
    • Journal Title

      J Immunol 186

      Pages: 1646-1655

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Loss-of-function mutations of CHST14 in a new type of Ehlers-Danlos syndrome2010

    • Author(s)
      Miyake N, Kosho T, Mizumoto S, Furuichi T, Hatamochi A, Nagashima Y, Arai E, Takahashi K, Kawamura R, Wakui K, Takahashi J, Kato H, Yasui H, Ishida T, Ohashi H, Nishimura G, Shiina M, Saitsu H, Tsurusaki Y, Doi H, Fukushima Y, Ikegawa S, Yamada S, Sugahara K, Matsumoto N
    • Journal Title

      Hum Mutat 31(8)

      Pages: 966-974

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structural basis of Ets1 cooperative binding to palindromic sequences on stromelysin-1 promoter DNA2010

    • Author(s)
      Babayeva ND, Wilder PJ, Shiina M, Mino K, Desler M, Ogata K, Rizzino A, Tahirov TH
    • Journal Title

      Cell Cycle 9(14)

      Pages: 3054-3062

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Dominant-negative mutations in alpha-II spectrin cause West syndrome with severe cerebral hypomyelination, spastic quadriplegia, and developmental delay2010

    • Author(s)
      Saitsu H, Tohyama J, Kumada T, Egawa K, Hamada K, Okada I, Mizuguchi T, Osaka H, Miyata R, Furukawa T, Haginoya K, Hoshino H, Goto T, Hachiya Y, Yamagata T, Saitoh S, Nagai T, Nishiyama K, Nishimura A, Miyake N, Komada M, Hayashi K, Hirai S, OgOgS, OggS, Oggg, Oga K, Kato M, Fukuda A, Matsumoto N
    • Journal Title

      Am J Hum Genet 86(6)

      Pages: 881-891

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Rational approach to the synthesis, evaluation and 68Ga labeling of a novel 4-anilinoquinoline EGFR inhibitor as a new imaging agent that selectively targets the EGFR tyrosine kinase2010

    • Author(s)
      Theeraladanon C, Takahashi N, Shiina M, Hamada K, Takada Y, Endo H, Tateishi U, Oka T, Ogata K, Inoue T
    • Journal Title

      Cancer Biotherapy & Radiopharmaceuticals 25(4)

      Pages: 479-485

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Rational approach to the synthesis, evaluation and 68Ga labeling of a novel 4-anilinoquinoline EGFR inhibitor as a new imaging agent that selectively targets the EGFR tyrosine kinase2010

    • Author(s)
      Theeraladanon C
    • Journal Title

      Cancer Biotherapy & Radiopharmaceuticals (in press)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The 8th and 9th tandem spectrin-like repeats of utrophin cooperatively form a functional unit to interact with polarity-regulating kinase PAR-1b2009

    • Author(s)
      Yamashita K, Suzuki A, Satoh Y, Ide M, Amano Y, Masuda-Hirata M, Hayashi YK, Hamada K, Ogata K, Ohno S
    • Journal Title

      Biochem.Biophys.Res.Commun. 391(1)

      Pages: 812-817

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] The 8th and 9th tandem spectrin-like repeats of utrophin cooperatively for a functional unit to interact with polarity-regulating kinase PAR-1b2009

    • Author(s)
      Yamashita K
    • Journal Title

      Biochem.Biophys.Res.Commun. 391

      Pages: 812-817

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] De novo mutations in the gene encoding STXBP1(MUNC18-1)cause early infantile epileptic encephalopathy2008

    • Author(s)
      Saitsu H, Kato M, Mizuguchi T, Hamada K, Osaka H, Tohyama J, Uruno K, Kumada S, Nishiyama K, Nishimura A, Okada I, Yoshimura Y, Hirai S, Kumada T, Hayasaka K, Fukuda A, Ogata K, Matsumoto N
    • Journal Title

      Nat Genet 40(6)

      Pages: 782-788

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] De novo mutations in the gene encoding STXBP1 (MUNC18-1) cause early infantile epileptic encephalopathy2008

    • Author(s)
      Saitsu H
    • Journal Title

      Nature Genetics 40

      Pages: 782-788

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Distant N-terminal and C-terminal domains are required for intrinsic kinase activity of SMG-1, a critical component of nonsense-mediated mRNA decay2007

    • Author(s)
      Morita T, Yamashita A, Kashima I, Ogata K, Ishiura S, Ohno S
    • Journal Title

      J Biol Chem 282(11)

      Pages: 7799-7808

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Foxo1 links insulin signaling to C/EBPα and regulates gluconeogenesis during liver development2007

    • Author(s)
      Sekine K, Chen YR, Kojima N, Ogata K, Fukamizu A, Miyajima A
    • Journal Title

      The EMBO Journal 26(15)

      Pages: 3607-3615

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Distant N-terminal and C-terminal domains are required for intrinsic kinase activity of SMG-1, a critical component of nonsense-mediated mRNA decay2007

    • Author(s)
      Morita T
    • Journal Title

      J Biol Chem 282

      Pages: 7799-7808

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Foxol links insulin signaling to C/EBP α and regulates gluconeogenesis during liver development2007

    • Author(s)
      Sekine K.
    • Journal Title

      The EMBO Journal 26

      Pages: 3607-3615

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Distant N-terminal and C-terminal domains are required for intrinsic kinase activity of SMG-1, a critical component of nonsense-mediated mRNA decay2007

    • Author(s)
      Tomoko Morita
    • Journal Title

      J.Biol.Chem. 16

      Pages: 7799-7808

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Cyclin-dependent kinase(CDK)phosphorylation destabilizes somatic Wee1 via multiple pathways2005

    • Author(s)
      Watanabe N, Arai H, Iwasaki J, Shiina M, Ogata K, Hunter T, Osada H
    • Journal Title

      Proc.Natl.Acad.Sci.USA 102(33)

      Pages: 11663-11668

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of the protein histidine phosphatase SixA in the multistep His-Asp phosphorelay2005

    • Author(s)
      Hamada K, Kato M, Shimizu T, Ihara K, Mizuno T, Hakoshima T
    • Journal Title

      Genes Cells 10

      Pages: 1-11

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structural basis for recruitment of human flap endonuclease 1 to PCNA2005

    • Author(s)
      Sakurai S, Kitano K, Yamaguchi H, Hamada K, Okada K, Fukuda K, Uchida M, Ohtsuka E, Morioka H, Hakoshima T
    • Journal Title

      EMBO J. 24(4)

      Pages: 683-693

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Cyclin-dependent kinase (CDK) phosphorylation destabilizes somatic Weel via multiple pathways2005

    • Author(s)
      Nobumoto Watanabe, Harumi Arai, Jun-ichi Iwasaki, Masaaki Shiina, Kazuhiro Ogata, Tony Hunter, Hiroyuki Osada
    • Journal Title

      Proc.Natl.Acad.Sci.USA 102

      Pages: 11663-11668

    • Related Report
      2005 Annual Research Report
  • [Journal Article] 特集 転写制御と疾患 タンパク質の分子構造異常と癌化.2005

    • Author(s)
      緒方 一博
    • Journal Title

      Molecular Medicine 42

      Pages: 64-75

    • Related Report
      2005 Annual Research Report
  • [Presentation] 分化細胞特異的エンハンソソーム形成とリン酸化による制御の分子基盤2011

    • Author(s)
      緒方一博
    • Organizer
      特定領域研究遺伝情報デコード成果報告シンポジウム
    • Place of Presentation
      東京
    • Related Report
      2009 Final Research Report
  • [Presentation] Context-Dependent Regulation of the Etsl-containing Enhanceosome by Phosphorylation2010

    • Author(s)
      Shiina M
    • Organizer
      Decode winter workshop 2010
    • Place of Presentation
      Yuzawa
    • Year and Date
      2010-01-18
    • Related Report
      2009 Annual Research Report
  • [Presentation] Context-Dependent Regulation of the Ets1-containing Enhanceosome by Phosphorylation.2010

    • Author(s)
      Shiina M, Hamada K, Uchiyama A, Shimamura M, Inoue-Bungo T, Baba S, Sato K, Ogata K
    • Organizer
      Decode winter workshop 2010
    • Place of Presentation
      Yuzawa
    • Related Report
      2009 Final Research Report
  • [Presentation] Effect of methylations of Runx1 by PRMT1 on its transactivation activity.2010

    • Author(s)
      Baba S, Shiina M, Bungo T, Shimamura M, Uchiyama A, Ogata K
    • Organizer
      Decode winter workshop 2010
    • Place of Presentation
      Yuzawa
    • Related Report
      2009 Final Research Report
  • [Presentation] Analysis of cooperative DNA binding activity between c-Ets1 and Runx1 on various DNA.2010

    • Author(s)
      Uchiyama A, Shiina M, Hamada K, Bungo T, Shimamura M, Ogata K
    • Organizer
      Decode winter workshop 2010
    • Place of Presentation
      Yuzawa
    • Related Report
      2009 Final Research Report
  • [Presentation] 細胞内シグナルによるエンハンソソーム制御の分子機構ワークショップ:クロマチン遺伝子制御研究の現状と将来2010

    • Author(s)
      椎名政昭, 浜田恵輔, 豊後泰子, 嶋村麻利子, 内山晃子, 馬場しほ, 佐藤光, 緒方一博
    • Organizer
      第33回日本分子生物学会年会・第83回日本生化学会大会合同大会
    • Place of Presentation
      神戸
    • Related Report
      2009 Final Research Report
  • [Presentation] Analysis of cooperative DNA binding activity between c-Ets1 and Runx1 on various enhancers.2010

    • Author(s)
      Uchiyama A, Shiina M, Hamada K, Bungo T, Shimamura M, Ogata K
    • Organizer
      第33回日本分子生物学会年会・第83回日本生化学会大会合同大会
    • Place of Presentation
      神戸
    • Related Report
      2009 Final Research Report
  • [Presentation] Context-dependent regulation of the Ets1-containing enhanceosome.2010

    • Author(s)
      Shiina M, Hamada K, Bungo T, Shimamura M, Uchiyama A, Baba S, Sato K, Ogata K
    • Organizer
      第33回日本分子生物学会年会・第83回日本生化学会大会合同大会
    • Place of Presentation
      神戸
    • Related Report
      2009 Final Research Report
  • [Presentation] 分子構造を基盤としたシグナル伝達と転写制御2010

    • Author(s)
      緒方一博
    • Organizer
      日本薬学会第130年会
    • Place of Presentation
      岡山
    • Related Report
      2009 Annual Research Report 2009 Final Research Report
  • [Presentation] TCRαエンハンサーにおける転写制御因子複合体形成の制御機構解析2009

    • Author(s)
      Shiina M, Hamada K, Bungo T, Shimamura M, Uchiyama A, Baba S, Ogata K
    • Organizer
      第82回日本生化学会大会
    • Place of Presentation
      神戸
    • Related Report
      2009 Final Research Report
  • [Presentation] Molecular mechanisms for allosteric regulation of Runxl activity2008

    • Author(s)
      Shiina M
    • Organizer
      第21回内藤コンファレンス
    • Place of Presentation
      山梨県北杜市
    • Year and Date
      2008-06-25
    • Related Report
      2008 Annual Research Report
  • [Presentation] Regulatory mechanism of assembly of transcription factors on DNA2008

    • Author(s)
      Ogata K
    • Organizer
      1st International Conference on Drug Design and Discovery
    • Place of Presentation
      Dubai
    • Year and Date
      2008-02-06
    • Related Report
      2008 Annual Research Report
  • [Presentation] 分子構造の揺らぎに注目したRunx1/AML1の活性制御機構解析2008

    • Author(s)
      椎名政昭, 嶋村麻利子, 豊後泰子, 緒方一博
    • Organizer
      第31回日本分子生物学会年会・第81回日本生化学会大会合同大会(BMB2008)
    • Place of Presentation
      神戸
    • Related Report
      2009 Final Research Report 2008 Annual Research Report
  • [Presentation] Molecular mechanisms for allosteric regulation of Runx1 activity.2008

    • Author(s)
      Shiina M, Shimamura M, Bungo T, Ogata K
    • Organizer
      第21回内藤コンファレンス
    • Place of Presentation
      山梨県北杜市
    • Related Report
      2009 Final Research Report
  • [Presentation] Regulatory mechanism of assembly of transcription factors on DNA2008

    • Author(s)
      Ogata K.
    • Organizer
      1st International Conference on Drug Design and Discovery
    • Place of Presentation
      Dubai,UAE
    • Related Report
      2007 Annual Research Report
  • [Presentation] 分子構造の揺らぎに注目したRunx1/AML1の活性制御機構解析2007

    • Author(s)
      椎名政昭, 嶋村麻利子, 豊後泰子, 緒方一博
    • Organizer
      第30回日本分子生物学会年会・第80回日本生化学会大会合同大会
    • Place of Presentation
      横浜
    • Related Report
      2009 Final Research Report
  • [Presentation] 転写制御異常と白血病2007

    • Author(s)
      緒方一博
    • Organizer
      第49回日本小児血液学会/第5回日本小児がん学会
    • Place of Presentation
      仙台
    • Related Report
      2009 Final Research Report
  • [Presentation] NMR analyses of molecular fluctuations of Runx1 and its correlation with functional regulations.2006

    • Author(s)
      Shiina M, Takata S, Bungo T, Shimamura M, Ogata K
    • Organizer
      NBSJ Forum 2006: Molecular Biology- the next decade- Conference & Scientific Exhibition
    • Place of Presentation
      名古屋
    • Related Report
      2009 Final Research Report
  • [Presentation] Structural basis for the diverse DNA sequence recognition by C/EBPαhomodimer.2006

    • Author(s)
      Shiina M, Takata S, Tahirov TH, Hamada K, Bungo T, Ogata K
    • Organizer
      20th IUBMB International Congress of Biochemistry and Molecular Biology and 11th FAOBMB Congress
    • Place of Presentation
      Kyoto
    • Related Report
      2009 Final Research Report
  • [Presentation] Molecular mechanism for the diverse DNA sequence recognition by C/EBPβhomodimer.2005

    • Author(s)
      Shiina M, Tahir TH, Hamada K, Takata S, Ogata K
    • Organizer
      第28回日本分子生物学会年会
    • Place of Presentation
      福岡市
    • Related Report
      2009 Final Research Report
  • [Presentation] Structural basis for the diverse DNA sequence recognition by C/EBPβhomodimer.2005

    • Author(s)
      Shiina M, Takata S, Hamada K, Ogata K
    • Organizer
      XX Congress of the International Union of Crystallography, Florence
    • Place of Presentation
      Italy
    • Related Report
      2009 Final Research Report
  • [Book] 転写制御とエピジェネティクス2008

    • Author(s)
      緒方一博, 浜田恵輔
    • Publisher
      南山堂
    • Related Report
      2009 Final Research Report
  • [Book] 転写制御とエピジェネティクス転写制御因子の分子構造と作用機構2008

    • Author(s)
      緒方一博
    • Total Pages
      16
    • Publisher
      南山堂
    • Related Report
      2008 Annual Research Report
  • [Book] 実験医学別冊生命科学のための機器分析実験ハンドブック2007

    • Author(s)
      椎名政昭, 緒方一博
    • Publisher
      羊土社
    • Related Report
      2009 Final Research Report
  • [Book] 実験医学増刊号「転写因子による生命現象解明の最前線」分子構造を基盤とした転写制御因子の活性制御機構2007

    • Author(s)
      緒方 一博
    • Total Pages
      8
    • Publisher
      羊土社
    • Related Report
      2007 Annual Research Report
  • [Book] 実験医学別冊 生命科学のための機器分析実験ハンドブツク 第8章 Biacore-タンパク質とリガンドとの相互作用の解析-2007

    • Author(s)
      椎名 政昭
    • Total Pages
      6
    • Publisher
      羊土社
    • Related Report
      2007 Annual Research Report
  • [Book] 分子生物学実験シリーズ「図・写真で観るタンパク構造・機能解析実験実践ガイド」2005

    • Author(s)
      椎名政昭, 浜田恵輔, 緒方一博
    • Publisher
      メディカルドゥ
    • Related Report
      2009 Final Research Report
  • [Book] 分子生物学実験シリーズ「図・写真で観るタンパク構造・機能解析実験実践ガイド」タンパク質の立体構造解析を行うために-分子構造解析のためのタンパク質試料調整法2005

    • Author(s)
      椎名政昭, 浜田恵輔, 緒方一博
    • Publisher
      メディカル ドゥ
    • Related Report
      2005 Annual Research Report
  • [Remarks]

    • URL

      http://www.decodesystems.jp/

    • Related Report
      2009 Annual Research Report

URL: 

Published: 2005-04-01   Modified: 2018-03-28  

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