Global regulation of genome expression : Single cell analysis of environmental stress response

• Project/Area Number: 17076016
• Research Category: Grant-in-Aid for Scientific Research on Priority Areas
• Allocation Type: Single-year Grants
• Review Section: Science and Engineering
• Research Institution: Hosei University
• Principal Investigator: ISHIHAMA Akira Hosei University, 企画・戦略本部, 特任教授 (80019869)
• Co-Investigator(Kenkyū-buntansha): MAGARIYAMA Yukio 農業食品産業技術総合研究機構, 食品総合研究所, 上席研究員 (40343818) ; YAMAMOTO Kaneyoshi 法政大学, 生命科学部, 准教授 (40351580)
• Project Period (FY): 2005 – 2009
• Project Status: Completed (Fiscal Year 2009)
• Budget Amount: ¥96,900,000 (Direct Cost: ¥96,900,000); Fiscal Year 2009: ¥17,800,000 (Direct Cost: ¥17,800,000); Fiscal Year 2008: ¥19,600,000 (Direct Cost: ¥19,600,000); Fiscal Year 2007: ¥19,700,000 (Direct Cost: ¥19,700,000); Fiscal Year 2006: ¥19,900,000 (Direct Cost: ¥19,900,000); Fiscal Year 2005: ¥19,900,000 (Direct Cost: ¥19,900,000)
• Keywords: ナノバイオロジー / システム生物学 / ゲノム / 転写制御 / 一細胞観察 / プロモーター / 転写因子 / 大腸菌 / 環境応答 / プロモーター強度 / マイクロマニュピュレーション / ストレス応答 / 単一細胞 / 転写ネットワーク / 細胞個性学 / 転写因子ネットワーク / 細胞制御 / 転写包括制御 / ゲノム転写 / 転写装置 / 一細胞生命科学

Research Abstract

The model bacterium, Escherichia coli, is able to survive under various stressful conditions in nature by forming the bacterial community, in which each cell plays a different physiological role. For search of the role each plays, single-live cell observation systems were developed using newly constructed cell chips, and transcription in individual cells was analyzed. Towards understanding the regulation mechanism of genome transcription, we also performed the systematic analysis of regulatory roles of a to tal of 300 transcription factors from E. coli.

Research Products

• [Journal Article] Prokaryotic genome regulation: Multi-factor promoters, multi-target regulators and hierarchic networks. (2010)
  • Author(s): Ishihama, A.
  • Journal Title: FEMS Microbial Reviews (in press)
  • Peer Reviewed
• [Journal Article] Regulation of the Escherichia coli csgD promoter: Interplay between five transcription factors. (2010)
  • Author(s): Ogasawara, H., Kori, A., Yamada, K., Yamamoto, K., Ishihama, A.
  • Journal Title: Microbiology (in press)
  • Peer Reviewed
• [Journal Article] A novel nucleoid protein of Escherichia coli induced under anaerobic growth conditions. (2010)
  • Author(s): Teramoto, J., Yoshimura, S.H., Takeyasu, K., Ishihama, A.
  • Journal Title: Nucleic Acids Res (in press)
  • Peer Reviewed
• [Journal Article] Prokaryotic genome regulation : Multi-factor promoters, multi-target regulators and hierarchic networks. (2010)
  • Author(s): Ishihama, A.
  • Journal Title: FEMS Microb.Rev. 34(in press)
  • Peer Reviewed
• [Journal Article] Promoter regulation of the E. coli csgD gene : Interplay between eight transcription factors in promoter binding. (2010)
  • Author(s): Ogasawara, H., Yamada, K., Kori, A., Yamamoto, K., Ishihama, A.
  • Journal Title: Microbiology 156(In press)
  • Peer Reviewed
• [Journal Article] A novel nucleoid protein of Escherichia coli induced under anaerobic growth conditions. (2010)
  • Author(s): Teramoto, J., Yoshimura, S.H., Takeyasu,_K., Ishihama, A.
  • Journal Title: Nucleic Acids Res. 38(In press)
  • Peer Reviewed
• [Journal Article] Participation of regulator AscG of theβ-glucoside utilization operon in regulation of the propionate catabolism operon. (2009)
  • Author(s): Ishida, Y., Kori, A., Ishihama, A.
  • Journal Title: J. Bacteriol. 191(19) Pages: 6136-6144
  • Peer Reviewed
• [Journal Article] Involvement of RNA-binding protein Hfq in the osmotic-response regulation of invE gene expression in Shigella sonnei. (2009)
  • Author(s): Mitobe, J., Morita -Ishihara, T., Ishihama, A., Watanabe, H.
  • Journal Title: BMC Microbiol 9 Pages: 110-110
  • Peer Reviewed
• [Journal Article] Involvement of leucine -response transcription factor LeuO in regulation of the genes for sulfa -drug efflux. (2009)
  • Author(s): Shimada, T., Yamamoto, K., Ishihama, A.
  • Journal Title: J. Bacteriol. 191(14) Pages: 4562-4571
  • Peer Reviewed
• [Journal Article] Enhancement of the synthesis of RpoE and StpA by polyamines at the level of translation in Escherichia coli under heat shock conditions. (2009)
  • Author(s): Terui, Y., Higashi, K., Tabei, Y., Tomitori, H., Yamamoto, K., Ishihama, A., Igarashi, K., Kashiwagi, K.
  • Journal Title: J. Baceriol. 191(17) Pages: 5348-5357
  • Peer Reviewed
• [Journal Article] Participation of regulator AscG of the β-glucoside utilization operon in regulation of the propionate catabolism operon. (2009)
  • Author(s): Ishida, Y., Kori, A., Ishihama. A.
  • Journal Title: J.Bacteriol. 191 Pages: 6136-6144
  • Peer Reviewed
• [Journal Article] Two modes of autoregulation of the murR repressor in Escherichia coli. (2009)
  • Author(s): Ishii, D., Ishihama. A., Yamamoto, K.
  • Journal Title: Biosci.Biotechnonl.Biochem. 73
  • NAID: 10027548218
  • Peer Reviewed
• [Journal Article] Involvement of RNA-binding protein Hfq in the osmotic-response regulation of invE gene expression in Shigella sonnei. (2009)
  • Author(s): Mitobe, J., Morita-Ishihara, T., Ishihama, A., Watanabe, H.:
  • Journal Title: BMC Microbiol. 9 Pages: 110-110
  • Peer Reviewed
• [Journal Article] Regulation of the E. coli csgD gene encoding the master regulator of biofilm formation : Interplay between multiple transcription factors (2009)
  • Author(s): Ogasawara, H., Kori, A., Yamada, K., Yamamoto, K., Ishihama, A.
  • Journal Title: Micro-Nano Mechatronics Human Sci. 2009 Pages: 186-190
  • Peer Reviewed
• [Journal Article] Genomic SELEX for the genome-wide search of regulation targets by transcription factors : SELEX-clos and SELEX-chip procedures. (2009)
  • Author(s): Shimada, T., Fujita, N., Yamamoto, Y., Ishihama, A.
  • Journal Title: Micro-Nano Mechatronics Human Sci. 2009 Pages: 175-178
  • Peer Reviewed
• [Journal Article] Involvement of Ieucine-reponse transcription factor LeuO in regulation of the genes for sulfa-drug efflux. (2009)
  • Author(s): Shimada, T., Yamamoto, K., Ishihama, A.
  • Journal Title: J.Bacteriol. 191 Pages: 4552-4571
  • Peer Reviewed
• [Journal Article] Anaerobiosis-Induced novel nucleoid protein of Escherichia coli : Architectural rofe in genome DNA compaction. (2009)
  • Author(s): Teramoto, J., Yamada, K., Kobayashi, N., Kori, A., Yoshimurd, S.H., Takeyasu, K., Ishihama, A.
  • Journal Title: Micro-Nano Mechatronics Human Sci. 2009 Pages: 179-182
  • Peer Reviewed
• [Journal Article] Single live-bacterial cell assay of promoter activity and regulation : Escherichia coli gcl promoter. (2009)
  • Author(s): Teramoto, J., Yamanishi, Y., Magdy, E-S.H., Hasegawa, A., Nakajima,M., Shimada, T., Arai, F., Fukuda, T., Ishihama. A.
  • Journal Title: Micro-Nano Mechatronics Human Sci. 2009 Pages: 175-178
  • Peer Reviewed
• [Journal Article] Enhancement of the synthesis of RpoE and StpA by polyamines at the level of translation in Escherichia coli under heat shock conditions. (2009)
  • Author(s): Terui, Y., Higashi, K., Tabei, Y., Tomitori, H., Yamamoto, K., Ishihama. A., Igarashi, K., Kashiwagi, K.
  • Journal Title: J.Bacteriol. 191 Pages: 5348-5357
  • Peer Reviewed
• [Journal Article] Characterization of CitA-CitB signal transduction activating genes involved in anaerobiccitrate catabolism in Escherichia coli. (2009)
  • Author(s): Yamamoto, K., Matsumoto, F., Minagawa, S., Oshima, T., Fujita, N., Ogasawara, N., Ishihama, A.
  • Journal Title: Biosci.Biotechnonl.Biochem. 73 Pages: 346-350
  • Peer Reviewed
• [Journal Article] On-chip cell immobilization and monitoring system using thermosensitive gel controlled by suspended polymeric microbridge. (2009)
  • Author(s): Yamanishi, Y., Teramoto, J., Magariyama, Y., Ishihama, A., Fukuda, T., Arai, F.
  • Journal Title: IEEE Transaction NanoBioscience 8 Pages: 312-317
  • Peer Reviewed
• [Journal Article] On-chip temperature control under suspended microbridge for cell immobilizsiion and cutture system. (2009)
  • Author(s): Yamanishi, Y., Teramoto, J., Magariyama, Y., Iahihama, A., Fukuda, T., Arai, F.
  • Journal Title: Proc. 13^<th> Internatl. Conf. Miniaturized Systems for Chemist.Life Sci 2009
• [Journal Article] Characterization of CitA-CitB signal transduction activating genes involved in anaerobic citrate catabolism in Escherichia coil (2009)
  • Author(s): Yamamoto, K., Matsumoto, E, Minagawa, S., Oshima, T., Fujita, N., Ogasawara, N. and Ishihama, A.
  • Journal Title: Biosci. Biotechnol. Biochem 73 Pages: 346-350
  • Peer Reviewed
• [Journal Article] AllR is the allantoin/glyoxylate sensing master regulator of the genes for degradation and reutilization of purines. (2008)
  • Author(s): Hasegawa, A., Ogasawara, H., Kori, A., Ishihama, A.
  • Journal Title: Microbiology 154 Pages: 366-3378
  • Peer Reviewed
• [Journal Article] Involvement of RNA binding protein Hfq in the post-transcriptional regulation of invE gene expression in Shigella sonnei. (2008)
  • Author(s): Mitobe, J., Ishihara, T., Ishihama, A., Watanabe, H.
  • Journal Title: J. Biol. Chem. 283 Pages: 5738-5747
  • Peer Reviewed
• [Journal Article] The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions. (2008)
  • Author(s): Shimada, T., Ishihama, A., Busby, S.J.W., Grainger, D.C.
  • Journal Title: Nucleic Acids Res. 36(12) Pages: 3950-3955
  • Peer Reviewed
• [Journal Article] The uncharacterized YdhM is the regulator of the nemA gene, coding for N-ethylmaleimide reductase. (2008)
  • Author(s): Umezawa, Y., Ogasawara, H., Shimada, T., Kori, A., Ishihama, A.
  • Journal Title: J. Bacteriol. 190(17) Pages: 5890-5897
  • Peer Reviewed
• [Journal Article] Anaerobic regulation of citrate fermentation by CitAB in Escherichia coli. (2008)
  • Author(s): Yamamoto, K., Matsumoto, F., Oshima, T., Fujita, N., Ogasawara, N., Ishihama, A.
  • Journal Title: Biosci. Biotechnol. Biochem. 72(11) Pages: 3011-3014
  • NAID: 10027534304
  • Peer Reviewed
• [Journal Article] Involvement of multiple transcription factors for metal-induced spy gene expression in Escherichia coli. (2008)
  • Author(s): Yamamoto, K., Ogasawara, H., Ishihama, A.
  • Journal Title: J. Biotechnol. 133(16) Pages: 80-6084
  • Peer Reviewed
• [Journal Article] AIIR is the allantoin/glyoxylate-sensing master regulator of the genes for degradation and reutilization of purines (2008)
  • Author(s): Hasegawa, A., Ogasawara, H., Kori, A. and Ishihama, A
  • Journal Title: Microbiology 154 Pages: 3366-3378
  • Peer Reviewed
• [Journal Article] Involvement of RNA binding protein Hfq in the post-tanscriptional regulation of invE gene expression in Shigella sonnei (2008)
  • Author(s): Mitobe, J., Ishihara, T, Ishihama, A. and Watanabe, H
  • Journal Title: J. Biol. Chem 283 Pages: 5738-5747
  • Peer Reviewed
• [Journal Article] The Escherichia coil RutR transcription factor binds at targets within genes as well as intergenic regions (2008)
  • Author(s): Shimada, T., Ishihama, A., Busby, S.W. and Grainger, D.C
  • Journal Title: Nucleic Acids Res 36 Pages: 3950-3955
  • Peer Reviewed
• [Journal Article] Single live-bacterial cell assay of promoter activity and regulation (2008)
  • Author(s): Teramoto, J., Hasegawa, A., Kori, A., Magdy, E-S., Nakajima, M.,,Lin, Y-C., Yamanshi, Y., Arai, F., Fukuda,T. and Ishihama, A
  • Journal Title: Micro-Nano Mechatronics and Human Science 2008 Pages: 301-306
• [Journal Article] The uncharacterized YdhM is the regulator of the nemA gene, coding for N-ethylmaleimide reductase (2008)
  • Author(s): Umezawa, Y., Ogasawara, H., Shimada, T., Kori, A. and Ishihama, A
  • Journal Title: J. Bacteriol 190 Pages: 5890-5897
  • Peer Reviewed
• [Journal Article] Anaerobic regulation of citrate fermentation by CitAB in Escherichia (2008)
  • Author(s): Yamamoto, K., Matsumoto, F., Oshima, T., Fujita, N., Ogasawara, N. and Ishihama, A
  • Journal Title: Biosci. Biotechnoi. Biochem 72 Pages: 3011-3014
  • Peer Reviewed
• [Journal Article] Involvement of multiple transcription factors for metal-induced spy gene expression in Escherichia coli (2008)
  • Author(s): Yamamoto, K., Ogasawara, H. and Ishihama, A
  • Journal Title: J. Biotechnol 133 Pages: 6080-6084
  • Peer Reviewed
• [Journal Article] Comprehensive analysis of the recognition sequences of DNA-binding transcription factors within the Esherichia coil genome using a newly developed 'Promoter Chip" (2008)
  • Author(s): Yamamoto, K., Shimada,T. and lshihama, A.
  • Journal Title: Mcro-Nano Mechatronics and Human Science 2008 Pages: 307-310
• [Journal Article] On-chip temperature sensing and control for cell immobilization and culture system (2008)
  • Author(s): Yamanishi, Y., Chow, E., Teramoto, J., Magariyama, Y., Ishihama, A., Fukuda, T. and Arai, F
  • Journal Title: Micro-Nano Mechatronics and Human Science 2008 Pages: 295-300
• [Journal Article] Involvement of RNA binding protein Hfq in the post-tanscriptionat regulation of invE gene expression in Shigella sonnei (2008)
  • Author(s): Mitobe, J., Ishihara, T., Ishihama, A. and Watanabe, H.
  • Journal Title: J. Biol. Chem. 283 Pages: 5738-5747
  • Peer Reviewed
• [Journal Article] The Escherichia coli RutR transcription factor binds at targetswithin genes as well as intergenic regions (2008)
  • Author(s): Shimada, T., Ishihama, A., Busby, S. J. W. and Grainger, D.C
  • Journal Title: Nucleic Acids Res. (In press)
  • Peer Reviewed
• [Journal Article] The Role of omega subunit of RNA polymerase in expression of the relA Gene in Escherichia coli. (2007)
  • Author(s): Chatterji, D., Ozoline, O., Ogawa, Y. Shimada, T., Ishihama, A.
  • Journal Title: FEMS Microbiol. Lett. 267(1) Pages: 51-55
  • Peer Reviewed
• [Journal Article] Genomic SELEX search for target genes under the control of PhoQP-RstBA signal relay cascade. (2007)
  • Author(s): Ogasawara, H., Hasegawa, A., Kanda, E., Miki, T., Yamamoto, K., Ishihama, A.
  • Journal Title: J. Bacteriol. 189(13) Pages: 4791-4799
  • Peer Reviewed
• [Journal Article] PdhR (pyruvate dehydrogenase complex regulator) controls the respiratory electron transport system in Escherichia coli. (2007)
  • Author(s): Ogasawara, H., Ishida, Y., Yamada, K., Yamamoto, K., Ishihama, A.
  • Journal Title: J. Bacteriol. 189(15) Pages: 5534-5541
  • Peer Reviewed
• [Journal Article] RutR is the uracil/thymine -sensing master regulator of a set of genes for synthesis and degradation of pyrimdines. (2007)
  • Author(s): Shimada, T., Hirao, K., Kori, A., Yamamoto, K., Ishihama, A.
  • Journal Title: Mol. Microbiol. 66(3) Pages: 744-779
  • Peer Reviewed
• [Journal Article] Enhancement of the synthesis of RpoN, Cra and H -NS by polyamines at the level of translation Escherichia coli cultured with glucose and glutamate. (2007)
  • Author(s): Terui, Y., Higashi, K., Taniguchi, S., Shigemasa, A., Nishimura, K., Kashiwagi, K., Yamamoto, K., Ishihama, A., Igarashi, K.
  • Journal Title: J. Bacteriol 189(6) Pages: 2359-2368
  • Peer Reviewed
• [Journal Article] folA a new member of the TyrR regulon in Escherichia coli K-12. (2007)
  • Author(s): Yang, J., Ogawa, Y., Camakaris, H., Shimada, T., Ishihama, A., Pittard, A.J.
  • Journal Title: J. Bacteriol. 189(16) Pages: 6080-6084
  • NAID: 120000993292
  • Peer Reviewed
• [Journal Article] The role of omega subunit of RNA polymerase in expression of the relA gene in Escherichia coli (2007)
  • Author(s): Chatterji, D., Ozoline, O., Ogawa, Y. Shimada, T. and Ishihama, A.
  • Journal Title: FEMS Microbiol. Lett. 267 Pages: 51-55
• [Journal Article] Host factor Ebp1: Selective inhibitor of influenza virus RNA polymerase (2007)
  • Author(s): Honda, A., Okamoto, T. and Ishihama, A
  • Journal Title: Genes Cells 12 Pages: 133-142
  • Peer Reviewed
• [Journal Article] Multi-scale genetics towards understandig the regulatory roles of all 300 transcription factors from a single organism Escherichia coli (2007)
  • Author(s): Ishihama, A., Ogasawara, H., Teramoto, J., Shimada, T., Hasegawa, A., Umezawa, Y., Yabuki, K., Ishida, Y., Inaba, T., Kori, A., Yamada, K., Kitai, Y., Kobayashi, N., Kato, D. and Yamamoto, K
  • Journal Title: Micro-Nano Mechatronics and Human Science 2007 Pages: 35-37
• [Journal Article] Genomic SELEX search for target genes under the control of PhoQP-RstBA signal relay cascade (2007)
  • Author(s): Ogasawara, H., Hasegawa, A., Kanda, E., Miki, T., Yamamoto, K. and Ishihama, A.
  • Journal Title: J. Bacteriol. 189 Pages: 4791-4799
  • Peer Reviewed
• [Journal Article] PdhR (pyruvate dehydrogenase complex regulator) controls the respiratory electron transport system in Escherichia coli (2007)
  • Author(s): Ogasawara, H., Ishida, Y., Yamada, K., Yamamoto, K.and Ishihama, A.
  • Journal Title: J. Bacteriol. 189 Pages: 5534-5541
  • Peer Reviewed
• [Journal Article] Preparation and preliminary X-ray diffraction analysis of crystals of bacterial flagellar sigma factor o^<28> in complex with the o^<28>-bindingregion of its anti-sigma factor FlgM (2007)
  • Author(s): Okuda, K., Ichihara, H., Takahashi, H., Fujita, N., Ishihama, A. and Hakoshima, T.
  • Journal Title: Acta Crystallogr F63 Pages: 196-199
  • Peer Reviewed
• [Journal Article] A novel two-component signaling system that activates transcription of an enerohemorrhagic Escherichia coli effector involved in remodeiing of host actin (2007)
  • Author(s): Reading, C.R., Torres, A.G., Kendall, M.M., Huges, D.T., Yamamoto, K. and Sperandio, V.
  • Journal Title: J. Bacteriol. 189 Pages: 2468-2476
  • Peer Reviewed
• [Journal Article] RutR is the uracil/thymine-sensing master regulator of a set of genes for synthesis and degradation of pyrimdines (2007)
  • Author(s): Shimada, T., Hirao, K., Kori, A., Yamamoto, K. and Ishihama, A.
  • Journal Title: Mol. Microbiol. 66 Pages: 744-749
  • Peer Reviewed
• [Journal Article] Enhancement of the synthesis of RpoN, Cra and H-NS bypolyamines at the level of translation Escherichia coli cultured with glucose and glutamate (2007)
  • Author(s): Terui, Y., Higashi, K., Taniguchi, S., Shigemasa, A., Nishimura, K., Kashiwagi, K., Yamamoto, K., Ishihama, A. and Igarashi,
  • Journal Title: J. Bactereiol. 189 Pages: 2359-2368
  • Peer Reviewed
• [Journal Article] Construction of ‘Promoter Chip' for microarray analysis of regulation targets of transcription factors (2007)
  • Author(s): Yamamoto, K. and Ishihama, A.
  • Journal Title: Micro-Nano Mechatronics and Human Science 2007 Pages: 35-40
  • Peer Reviewed
• [Journal Article] Involvement of multiple transcription factors for metal-induced spygene expression in Escherichia coli (2007)
  • Author(s): Yamamoto, K., Ogasawara, H. and Ishihama, A.
  • Journal Title: J. Biotechnol. 133 Pages: 6080-6084
  • Peer Reviewed
• [Journal Article] folA a new member of the TyrR regulon in Escherichia coli K-12 (2007)
  • Author(s): Yang, J., Ogawa, Y., Camakaris, H., Shimada, T., (shihama, A. and Pittard, A.J.:
  • Journal Title: J. Bacteriol. 189 Pages: 6080-8084
  • Peer Reviewed
• [Journal Article] 代謝糸を統合的に制御する包括転写因子-ひとつの生物の全ての転写因子の調節機能同定を目指して- (2007)
  • Author(s): 石浜 明
  • Journal Title: 遺伝 21 Pages: 322-332
• [Journal Article] 大腸菌ゲノム発現カスケードー「細胞個性学」事始め- (2007)
  • Author(s): 石浜 明
  • Journal Title: 日本ロボット学会誌 25 Pages: 32-35
  • NAID: 10018869516
• [Journal Article] 大腸菌ゲノムの転写包括制御 - ひとつの生物の全ての転写因子の調節機能同定をめざして- (2007)
  • Author(s): 石浜 明
  • Journal Title: 実験医学 25 Pages: 1531-1538
• [Journal Article] レーザー暗視野顕微鏡を用いたサルモネラ菌べん毛のらせんパラメータ観測 (2007)
  • Author(s): 西鳥羽恵美、曲山幸生、高野泰斉、飯野正昭、工藤成史
  • Journal Title: 可視化情報学会論文集 27 Pages: 15-21
  • NAID: 130004438187
• [Journal Article] グラム陽性菌とグラム陰性菌における金属応答機構 (2007)
  • Author(s): 山本兼由, J.L. Hobman, 大島 拓
  • Journal Title: 化学と生物 45 Pages: 164-167
• [Journal Article] The role of omega subunit of RNA polymerase in expression of the relA gene in Escherichia coli. (2007)
  • Author(s): Chatterji, D., Ozoline, O., Ogawa, Y., Shimada, T., Ishihama, A.
  • Journal Title: FEMS Microbiol. Lett. 267 Pages: 51-55
• [Journal Article] Host factor Ebpl : Selective inhibitor of influenza virus RNA polymerase. (2007)
  • Author(s): Honda, A., Okamoto, T., Ishihama, A.
  • Journal Title: Genes Cells 12 Pages: 133-142
• [Journal Article] Enhancement of the synthesis of RpoN, Cra and H-NS by polyamines at the level of translation Escherichia coli cultured with glucose and glutamate. (2007)
  • Author(s): Terui, Y., Higashi, K., Taniguchi, S., Shigemasa, A., Nishimura, K., Kashiwagi, K., Yamamoto, K., Ishihama, A., Igarashi, K.
  • Journal Title: J. Bacteriol. 189 Pages: 2359-2368
• [Journal Article] Genomic SELEX search for target genes under the control of PhoQP-RstBA signal relay cascade. (2007)
  • Author(s): Ogasawara, H., Hasegawa, A., Kanda, E., Miki, T., Yamamoto, K, Ishihama.A.
  • Journal Title: J. Bacteriol. 189(In press)
• [Journal Article] PdhR (pyruvate dehydrogenase complex regulator) controls the respiratory electron transport system in Escherichia coli. (2007)
  • Author(s): Ogasawara, H., Ishida, Y., Yamada, K., Yamamoto, K., Ishihama, A.
  • Journal Title: J. Bacteriol. 189(In press)
• [Journal Article] Anaerobic regulation of citrate metabolism by CitAB two-component signal transduction in Escherichia coli. (2007)
  • Author(s): Yamamoto, K., Matsumoto, F., Oshima, T., Fujita, N., Ogasawara, N., Ishihama, A
  • Journal Title: J. Biolechnol. 130(In press)
• [Journal Article] 大腸菌における金属ホメオスタシス (2007)
  • Author(s): 山本兼由, 石浜 明
  • Journal Title: バイオサイエンスとバイオインダストリー 64 Pages: 151-154
  • NAID: 10017315807
• [Journal Article] 代謝系を統合的に制御する包括転写因子-ひとつの生物の全ての転写因子の調節機能同定を目指して- (2007)
  • Author(s): 石浜 明
  • Journal Title: 生物の科学 遺伝 別冊21
• [Journal Article] 大腸菌ゲノムの転写包括制御-ひとつの生物の全ての転写因子の調節機能同定をめざして- (2007)
  • Author(s): 石浜 明
  • Journal Title: 転写因子をモデルとしたグローバル制御へのアプローチ(実験医学) 増刊号(印刷中)
• [Journal Article] Enhancement of +1 frameshift by polyamines during translation of polypeptide release factor 2 in Escherichia coli. (2006)
  • Author(s): Higashi, K., Kashiwagi, K., Taniguchi, S., Terui, Y., Yamamoto, K., Ishihama, A., Igarashi, K.
  • Journal Title: J. Biol. Chem. 281 Pages: 9527-9537
  • Peer Reviewed
• [Journal Article] The dynamic state of DNA topology is essential for genome condensation in bacteria. (2006)
  • Author(s): Ohniwa, R.L., Morikawa, K., Kim, J., Ohta, T., Ishihama, A., Wada, C., Takeyasu, K.
  • Journal Title: EMBO J. 25 Pages: 5591-5602
  • Peer Reviewed
• [Journal Article] Characterization of copper -inducible promoters regulated by CpxA/CpxR in Escherichia coli. (2006)
  • Author(s): Yamamoto, K., Ishihama, A.
  • Journal Title: Bioscience, Biotechnology and Biochemistry 70 Pages: 1688-1695
  • NAID: 10018529229
  • Peer Reviewed
• [Journal Article] Enhancement of+1 frameshift by polyamines during translation of polypeptide release factor 2 in Escherichia coli. (2006)
  • Author(s): Higashi, K., Kashiwagi, K., Taniguchi, S., Terui, Y., Yamamoto, K., Ishihama, A., Igarashi, K.
  • Journal Title: J. Biol. Chem. 281 Pages: 9527-9537
• [Journal Article] The dynamic state of DNA topology is essential for genome condensation in bacteria. (2006)
  • Author(s): Ohniwa, R.L., Mirikawa, K., Kim, J., Ohta, T., Ishihama, A., Wada, C., Takeyasu, K.
  • Journal Title: EMBO J. 25 Pages: 5591-5602
• [Journal Article] Characterization of copper-inducible promoters regulated by CpxA/CpxR in Escherichia coli. (2006)
  • Author(s): Yamamoto, K., Ishihama, A.
  • Journal Title: Biosci. Biotechnol. Biochem. 70 Pages: 1688-1695
  • NAID: 10018529229
• [Journal Article] Multi-scale genetics towards understanding the hierarchy of transcription factor network in genome regulation. (2006)
  • Author(s): Ishihama, A., Ogasawara, H., Shimada, T., Teramoto, J., Hasegawa, A., Umezawa, Y., Yabuki, K., Ishida, Y., Inaba, T., Matsui, M., Kori, A., Yamada, K., Hirao, K., Yamamoto, K.
  • Journal Title: Micro-Nano Mechatronics Human Sci. 2006(In press)
• [Journal Article] Improvement in motion efficiency of a spirochee Bracyspira pilosicoli in viscous environments (2006)
  • Author(s): Sakamoto, K., Magariyama, Y., Isobe, S.
  • Journal Title: Biophys. J. 89 Pages: 513-526
• [Journal Article] Anisotropic growth of Vibrio alginolyticus colonies affected by their neighboring colobies (2006)
  • Author(s): Sakamoto, K., Magariyama, Y., Isobe, S.
  • Journal Title: Curr. Microbiol.
• [Journal Article] 大腸菌細胞分化の遺伝子発現カスケード : 「細胞個性学」の幕開け (2006)
  • Author(s): 石浜 明
  • Journal Title: 蛋白質核酸酵素 51 Pages: 958-965
  • NAID: 40007357935
• [Journal Article] Enhancement of +1 frameshift by polyamines during translation of polypeptide release factor 2 in Escherichia coli (2006)
  • Author(s): Higashi, K., Kashiwagi, K., Taniguchi, S., Terui, Y., Yamamoto, K., Ishihama, A., Igarashi, K.
  • Journal Title: J.Biol.Chem. (In press)
• [Journal Article] Gene expression profiling of Escherichia coli and regulatory role of RNA polymerase omega subunit in stringent control of transcription (2006)
  • Author(s): Chatterji, D., Ozoline, O., Ogawa, Y., Ishihama, A.
  • Journal Title: Microbiology (In press)
• [Journal Article] Systematic search for the Cra-binding promoters using genomic SELEX. (2005)
  • Author(s): Shimada, T., Fujita, N., Maeda, M., Ishihama, A.
  • Journal Title: Genes Cells 10(9) Pages: 907-918
  • Peer Reviewed
• [Journal Article] Transcriptional response of Escherichia coli to external copper. (2005)
  • Author(s): Yamamoto, K., Ishihama, A.
  • Journal Title: Mol. Microbiol. 55(1) Pages: 215-227
  • Peer Reviewed
• [Journal Article] Transcriptional response of Escherichia coli to external zinc. (2005)
  • Author(s): Yamamoto, K., Ishihama, A.
  • Journal Title: J. Bacteriol. 187(18) Pages: 6333-6340
  • NAID: 120000993462
  • Peer Reviewed
• [Journal Article] Functional characterization in vitro of all two-component signal transduction systems from Escherichia coli. (2005)
  • Author(s): Yamamoto, K., Hirano, K., Ohshima, T., Aiba, H., Utsumi, R., Ishihama, A.
  • Journal Title: J. Biol. Chem. 280(2) Pages: 1448-1456
  • Peer Reviewed
• [Journal Article] Systematic search for the Cra-binding promoters using genomic SELEX (2005)
  • Author(s): Shimada, T., Fujita, N., Maeda, M., Ishihama, A
  • Journal Title: Genes Cells 10(9) Pages: 907-918
• [Journal Article] Cross-talks in signal transduction network among all two-component systems in Escherichia coli (2005)
  • Author(s): Yamamoto, Y., Hirano, K., Ohshima, T., Aiba, H., Utsumi, R., Ishihama, A.
  • Journal Title: J.Biol.Chem. 280(2) Pages: 1448-1456
• [Journal Article] Transcriptional response of Escherichia coli to external copper (2005)
  • Author(s): Yamamoto, Y., Ishihama, A.
  • Journal Title: Mol.Microbiol. 55(1) Pages: 215-227
• [Journal Article] Transcriptional response of Escherichia coli to external zinc (2005)
  • Author(s): K.Yamamoto, A.Ishihama
  • Journal Title: J.Bacteriol. 187(18) Pages: 6333-6340
  • NAID: 120000993462
• [Journal Article] Negative regulation of DNA repair gene (uvrA) expression by ArcA/ArcB two-component system in Escherichia coli (2005)
  • Author(s): Ogasawara, H., Teramoto, J., Hirao, K.Yamamoto, K., Ishihama, A., Utsumi, R.
  • Journal Title: FEMS Microbi.Letters
• [Journal Article] Studies of Schizosaccharomyces pombe TFIIE indicate conformational and functional changes in RNA polymerase II at transcription initiation (2005)
  • Author(s): Hayashi, K., Watanabe, T., Tanaka, A., Furumoto, T., Sato-Tsuchiya, C., Kimura, M., Yokoi, M., Ishihama, A., Hanaoka, F., Ohkuma, Y.
  • Journal Title: Genes Cells 10(1) Pages: 207-224
• [Journal Article] The fission yeast protein, Ker1p, is an ortholog of RNA polymerase I subunit A14 in Saccharomyces cerevisiae, and is required for stable association of Rrm3 and RPA21 in Pol I (2005)
  • Author(s): Imazawa, Y., Hisatake, K., Mitsuzawa, H., Matsumoto, M., Tsukui, T., Nakagawa, K., Nakadai, T., Shimada, M., Ishihama, A., Nori, Y.
  • Journal Title: J.Biol.Chem. 280(12) Pages: 11467-11474
• [Journal Article] Glyceraldehyde-3-phosphate dehydrogenase associates with RNA polymerase II and interacts with its Rpb7 subunit (2005)
  • Author(s): Mitsuzawa, H., Kimura, M., Kanda, E., Ishihama, A.
  • Journal Title: FEBS Letters 579(1) Pages: 48-52
• [Journal Article] Difference in bacterial motion between forward and backward swimming caused by the wall effect (2005)
  • Author(s): Kudo, S., Imai, N., Nishitoba, M., Sugiyama, S., Magariyama, Y.
  • Journal Title: FEMS Microb.Letters 89(6) Pages: 221-225
• [Journal Article] Asymmetric swimming pattern of Vibrio alginolyticus cells with single polar flagella (2005)
  • Author(s): Magariyama, Y., Ichiba, M., Nakata, K., Baba, K., Ohtani, T., Kudo, S., Goto, T.
  • Journal Title: Biophys.J. 88(5) Pages: 3648-3658
• [Journal Article] Analysis on deformation of helical flagella of Salmonella (2005)
  • Author(s): Takano, Y., Kudo, S., Nishitoba, M., Magariyama, Y.
  • Journal Title: JSME Internatl.J., Series C 48(4) Pages: 513-520
• [Presentation] rokaryotic genome regulation: Multi-factor promoters, multi-target regulators and multi-factor networks. (2010)
  • Author(s): Ishihama, A.
  • Organizer: Japan -India Collaborative Science Program Seminar
  • Place of Presentation: Centre for Cellular and Molecular Biology (CCMB), Hyderabad, India
  • Year and Date: 2010-03-17
• [Presentation] Prokaryotic Genome Regulation : Multi-factor promoters, multi-target regulators and multi-factor networks. (2010)
  • Author(s): Ishihama, A.
  • Organizer: Japan-India Collaborative Science Program Seminar
  • Place of Presentation: CCMB, Hyderabad(India)
  • Year and Date: 2010-03-17
• [Presentation] Prokaryotic Genome Regulation : Multi-factor promoters, multi-targetregulators and multi-factor networks. (2010)
  • Author(s): Ishihama, A.
  • Organizer: Japan-India Collaborative Science Program Seminar
  • Place of Presentation: CDFD, Hyderabad(India)
  • Year and Date: 2010-03-16
• [Presentation] 大腸菌新規核様体タンパクDanの発見と構造機能解析 (2010)
  • Author(s): 寺本潤・吉村成弘・山田佳代子・郡彩子・竹安邦夫・石浜明
  • Organizer: 特定領域研究「バイオ操作」第8回公開シンポジウム
  • Place of Presentation: 九州大学(福岡)
  • Year and Date: 2010-03-11
• [Presentation] 細菌単-細胞での転写制御の解析 (2010)
  • Author(s): 寺本潤・山西陽子・大山晃太郎・中島正博・新井史人・福田敏男・石浜明
  • Organizer: 特定領域研究「バイオ操作」第8回公開シンポジウム
  • Place of Presentation: 九州大学(福岡)
  • Year and Date: 2010-03-11
• [Presentation] 細菌ゲノム制御全体像解明のための戦略戦術 (2010)
  • Author(s): 石浜明
  • Organizer: 日本大学学術研究高度化推進事業公開シンポジウム「病原体抑制遺伝子の解明と感染症の制御」
  • Place of Presentation: 日大・オープンリサーチセンター, 東京
  • Year and Date: 2010-02-26
• [Presentation] 細菌ゲノム制御全体像解明のための戦略戦術 (2010)
  • Author(s): 石浜明
  • Organizer: 日本大学学術研究高度化推進事業公開シンポジウム「病原体抑制遺伝子の解明と感染症の制御」
  • Place of Presentation: 日本大学(東京)
  • Year and Date: 2010-02-26
• [Presentation] 細菌細胞の個性:その分子基盤 (2010)
  • Author(s): 石浜明
  • Organizer: 九州大学G-COE「未来分子システム科学」公開セミナー
  • Place of Presentation: 九州大学先導物質化学研究所、福岡
  • Year and Date: 2010-02-09
• [Presentation] 細菌細胞の個性:その分子基盤 (2010)
  • Author(s): 石浜明
  • Organizer: 九州大学G-COE「未来分子システム科学」公開セミナー
  • Place of Presentation: 九州大学(福岡)
  • Year and Date: 2010-02-09
• [Presentation] 多様な環境要因に応答するcsgDプロモーターの転写制御に関わる分子機構の解明 (2010)
  • Author(s): 小笠原寛・郡彩子・山田佳代子・山本兼由・石浜明
  • Organizer: 日本農芸化学会2010大会
  • Place of Presentation: 東京大学(東京)
• [Presentation] 大腸菌転写因子CRPのゲノム上結合部位の全体像:Genomic SELEX法を用いた解析 (2010)
  • Author(s): 島田友裕, 藤田信之, 山本兼由, 石浜明
  • Organizer: 第4回ゲノム微生物学会年会
  • Place of Presentation: 九州大学(福岡)
• [Presentation] モリブデンを感知する転写因子ModEに制御される新規非翻訳RNA (2009)
  • Author(s): 平松優和・小笠原寛・石浜明・山本兼由
  • Organizer: 第8回微生物研究会
  • Place of Presentation: 日本大学湘南キヤンパス(神奈川)
  • Year and Date: 2009-05-30
• [Presentation] Genomic SELEX search for regulation targets by 100 species of uncharacterized transcription factors from E. coli. (2009)
  • Author(s): Ishihama, A.
  • Organizer: 12th Transcription Assembly
  • Place of Presentation: Chandigarh, India
• [Presentation] Growth phase-dependent regulation of csgD, the master regulator of biofilm formation: Interplay between multiple transcription factors. (2009)
  • Author(s): Ishihama, A.
  • Organizer: 3 rd Internatl. Conf. Environ. Indust. Appl. Microbiol. (BioMicroWorld2009)
  • Place of Presentation: Lisbon, Portugal
• [Presentation] 細菌の生存戦略としてのバイオフィルム形成:遺伝子制御ネットワークと転写因子群 (2009)
  • Author(s): 石浜明
  • Organizer: 日本生化学会第82回大会シンポジウム"細菌の生存戦略をめぐる新たな展開"
  • Place of Presentation: 神戸ポートアイランド、神戸
• [Presentation] 大腸菌における環境金属応答のゲノム転写制御 (2009)
  • Author(s): 石浜明
  • Organizer: メタルバイオサイエンス研究会2009
  • Place of Presentation: 東京大学、東京
• [Presentation] Genomic SELEX search for regulation targets by 100 species of uncharacterized transcription factors from E.coli. (2009)
  • Author(s): Ishihama, A.
  • Organizer: 12^<th> Transcription Assembly
  • Place of Presentation: Chandigarh(India)
• [Presentation] Growth phase-dependent regulation of csgD, the master regulator of biofilm formation : Interplay between multiple transcription factors. (2009)
  • Author(s): Ishihama. A., Ogasawara, H., Shimada, T., Teramoto, J., Kori, A., Yamada, K., Yamamoto, K.
  • Organizer: 3^<rd> Internatl. Conf. Environ. Indust. Appl. Microbiol.(BioMicroWorld2009)
  • Place of Presentation: Lisbon(Portugal)
• [Presentation] Regulatory roles of nucleoid-associated proteins in Escherichia coli. (2009)
  • Author(s): Ishihama. A., Teramoto, J., Ogasawara, H., Shimada, T., Yamamoto, K.
  • Organizer: 32^<nd> Ann.Meet.Mol.Biol.Soc.Japan
  • Place of Presentation: Pacifico Yokohama(Japan)
• [Presentation] Control of biofilm formation by Escherichia coli : Interplay between multiple transcription factors. (2009)
  • Author(s): Ogasawara, H., Kori, A., Yamada, K., Yamamoto, K., Ishihama, A.
  • Organizer: 20^<th> Internatl.Symp.Micro-NanoMechatronics Human Sci., Symp. "Systems Cell Engineering by Multi-scale Manipulation"
  • Place of Presentation: Nagoya, Univ.(Japan)
• [Presentation] Noveltechnologies for the genome-wide search of regulation targets by transcription factors : Genomic SELEX and SELEX-chip. (2009)
  • Author(s): Shimada, T., Fujita, N., Yamamoto, K., Ishihama, A.
  • Organizer: 20th Internatl.Symp.Micro-NanoMechatronics Human Sci., Symp. "Systems Cell Engineering by Multi-scale Manipulation"
  • Place of Presentation: Nagoya Unv.(Japan)
• [Presentation] Single live-bacterial cell assay of promoter activity and regulation : Escherichia coli gcl promoter. (2009)
  • Author(s): Teramoto, J., Yamanishi, Y., Magdy, E-S.H., Hasegawa, A., Nakajima, M., Arai, F., Fukuda, T., Ishihama, A.
  • Organizer: 3^<rd> Internatl.Conf.Environ.Indust.Appl.Microbiol.(BioMicroWorld2009)
  • Place of Presentation: Lisbon(Portugal)
• [Presentation] Anaeoboriosis-induced novel nucleold protein Dan in Escherichia coli. (2009)
  • Author(s): Teramoto, J., Yoshimura, S.H., Takeyasu, K., Ishihama, A.
  • Organizer: 20^<th> Internatl.Symp.Micro-NanoMechatronics Human Sci., Symp. "Systems Cell Engineering by Multi-scale Manipulation"
  • Place of Presentation: Nagoya Univ.(Japan)
• [Presentation] Single live-cell cell assay of promoter activity and regulation. (2009)
  • Author(s): Teramoto, J., Yamanishi, Y., Magdy, E-S.H., Hasegawa, A., Shohata, E., Kori, A., Nakajima, M., Arai, F., Fukuda, T., Ishihama, A.
  • Organizer: 20^<th> Internatl.Symp.Micro-NanoMechatronics Human Sci., Symp. "Systems Cell Engineering by Multi-scale Manipulation"
  • Place of Presentation: Nagoya Univ.(Japan)
• [Presentation] A single cell immobilization and culture system under suspenced polymeric microbridge with compartments. (2009)
  • Author(s): Yamanishi, Y., Teramoto, J., Magariyama, Y., Ishihama, A., Fukuda, T., Arai, F.
  • Organizer: 20^<th> Internatl.Symp.Micro-NanoMechatronics Human Sci., Symp. "Systems Cell Engineering by Multi-scale Manipulation"
  • Place of Presentation: Nagoya Univ.(Japan)
• [Presentation] On-chip temperature control under suspended microbridge for cell immobilization and culture system.A (2009)
  • Author(s): Yamanishi, Y., Teramoto, J., Magariyama, Y., Ishihama, A., Fukuda, T., Arai, F.
  • Organizer: 3^<th> Internatl.Conf.Miniaturized Systems for Chemist.Life Sci.(mTAS)
  • Place of Presentation: Jeju(Korea)
• [Presentation] 細菌の生存戦略としてのバイオフィルム形成:遺伝子制御ネットワークと転写因子群 (2009)
  • Author(s): 石浜明
  • Organizer: 2008年度「べん毛研究会」
  • Place of Presentation: 秋保グランドホテル(宮城)
• [Presentation] 細菌の環境金属応答のゲノム制御 (2009)
  • Author(s): 石浜明・小笠原寛・島田友祐・寺本潤・小林尚貴・郡彩子・山田佳代子・山本兼由
  • Organizer: メタロチオネインおよびメタルバイオサイエンス研究会2009
  • Place of Presentation: 東京大学(東京)
• [Presentation] 細菌の生存戦略としてのバイオフィルム形成:遺伝子制御ネットワークと転写因子群 (2009)
  • Author(s): 石浜明・小笠原寛・島田友祐・寺本潤・小林尚貴・郡彩子・山田佳代子・山本兼由
  • Organizer: 第82回日本生化学会大会シンポジウム「細菌の生存戦略をめぐる新たな展開」
  • Place of Presentation: 神戸ポートピア(神戸)
• [Presentation] 大腸菌転写因子YpdB支配下制御遺伝子群の同定と制御機構の解明 (2009)
  • Author(s): 稲葉達也・山田佳代子・郡彩子・石浜明
  • Organizer: 日本ゲノム微生物学会第3回年会
  • Place of Presentation: 中央大学(東京)
• [Presentation] 大腸菌機能未知転写因子YkgDの制御標的遺伝子群の同定と機能解析 (2009)
  • Author(s): 大貫章吾・寺本潤・郡彩子・石浜明
  • Organizer: 第32回日本分子生物学会年会
  • Place of Presentation: パシフィコ横浜(横浜)
• [Presentation] 多因子が関与する大腸菌Curli線毛発現制御機構の解明 (2009)
  • Author(s): 小笠原寛・郡彩子・山田佳代子・山本兼由・石浜明
  • Organizer: 日本農芸化学会2009年度大会
  • Place of Presentation: 福岡メッセ(福岡)
• [Presentation] Control of biofilm formation by Escherichia coli : Interplay between multiple transcription factors. (2009)
  • Author(s): 小笠原寛・郡彩子・山田佳代子・山本兼由・石浜明
  • Organizer: 第32回日本分子生物学会年会
  • Place of Presentation: パシフィコ横浜(横浜)
• [Presentation] 大腸菌機能未知転写因子YidZの制御標的遺伝子群の同定と制御機能解析 (2009)
  • Author(s): 片山泰徳・小笠原寛・郡彩子・山田佳代子・石浜明
  • Organizer: 第32回日本分子生物学会年会
  • Place of Presentation: パシフィコ横浜(横浜)
• [Presentation] 大腸菌機能未知転写因子YbjKによる転写制御機構の解析 (2009)
  • Author(s): 河北寿一・島田友裕・山田佳代子・石浜明
  • Organizer: 第32回日本分子生物学会年会
  • Place of Presentation: パシフィコ横浜(横浜)
• [Presentation] 大腸菌機能未知転写因子YneJによる転写制御機構の解析 (2009)
  • Author(s): 國友雄介・寺本潤・山田佳代子・長谷川明子・石浜明
  • Organizer: 第32回日本分子生物学会年会
  • Place of Presentation: パシフィコ横浜(横浜)
• [Presentation] Quorum Sensing転写因子QseAの調節機能の解析 (2009)
  • Author(s): 小林尚貴・寺本潤・五浜明
  • Organizer: 日本ゲノム微生物学会第3回年会
  • Place of Presentation: 中央大学(東京)
• [Presentation] Quorum-sensing transcription factor QseA of Escherichia coli : Search forregulation targets and analysis of regulatory modes. (2009)
  • Author(s): 小林尚貴・稲葉達也・山田佳代子・寺本潤・石浜明
  • Organizer: 第32回日本分子生物学会年会
  • Place of Presentation: パシフィコ横浜(横浜)
• [Presentation] Genomic SELEXを用いた大腸菌Leu0の転写制御機構解析 (2009)
  • Author(s): 島田友裕・山本兼由・石浜明
  • Organizer: 日本ゲノム微生物学会第3回年会
  • Place of Presentation: 中央大学(東京)
• [Presentation] 細胞分裂調節因子SdiAに影響するHomoserine Lactone類似体の同定と新規支配下遺伝子群の探索 (2009)
  • Author(s): 島田佳織・鍛代悠一・松井誠・島田友裕・五十嵐潤・菅裕明・石浜明
  • Organizer: 第32回日本分子生物学会年会
  • Place of Presentation: パシフィコ横浜(横浜)
• [Presentation] ウラシル/チミンを感知する転写因子RutRによるピリミジン合成/分解経路に関与する遺伝子群の制御機構の解析 (2009)
  • Author(s): 島田友祐・山本兼由・石浜明
  • Organizer: 日本農芸化学会2009年度大会
  • Place of Presentation: 福岡メッセ(福岡)
• [Presentation] Genomic SELEXを用いた大腸菌Leu0の転写制御機構解析 (2009)
  • Author(s): 島田友祐・山本兼由・石浜明
  • Organizer: 第6回21世紀大腸菌研究会
  • Place of Presentation: KKR熱海(神奈川)
• [Presentation] Involvement of the leucine response transcription factor Leu0 in regulation of the genes for sulfa drug efflux. (2009)
  • Author(s): 島田友裕・山本兼由・石浜明
  • Organizer: 第32回日本分子生物学会年会
  • Place of Presentation: パシフィコ横浜(横浜)
• [Presentation] ビフィズス菌の共存時に発現する大腸菌プロモーター (2009)
  • Author(s): 田村正典・村田侑子・森田英利・石浜明・山本兼由
  • Organizer: 第6回21世紀大腸菌研究会
  • Place of Presentation: KKR熱海(神奈川)
• [Presentation] Identification of promoters induced in Escherichia coli growing with Bifidobacterium. (2009)
  • Author(s): 田村正典・村田侑子・石浜明・山本兼由
  • Organizer: 第32回日本分子生物学会年会
  • Place of Presentation: パシフィコ横浜(横浜)
• [Presentation] 嫌気条件で誘導される大腸菌新規核様体タンパク質 (2009)
  • Author(s): 寺本潤・吉村成弘・竹安邦夫・石浜明
  • Organizer: 第6回21世紀大腸菌研究会
  • Place of Presentation: KKR熱海(神奈川)
• [Presentation] Single live-bacterial cell assay of promoter activity and regulation in Escherichia coli. (2009)
  • Author(s): 寺本潤・山西陽子・Magdy, E-S.H.・長谷川明子・正畑絵理・新井史人・福田敏男・石浜明
  • Organizer: 第32回日本分子生物学会年会
  • Place of Presentation: パシフィコ横浜(横浜)
• [Presentation] 大腸菌転写因子DeoRの新規標的遺伝子群の同定と制御機能解明 (2009)
  • Author(s): 中川史之・島田友裕・石田雄士・石浜明
  • Organizer: 第32回日本分子生物学会年会
  • Place of Presentation: パシフィコ横浜(横浜)
• [Presentation] 大腸菌全tRNA遺伝子発現プロファイルの解析 (2009)
  • Author(s): 長谷川喬彬・梅林章・五浜明・前田理久
  • Organizer: 第32回日本分子生物学会年会
  • Place of Presentation: パシフィコ横浜(横浜)
• [Presentation] Novel non-coding RNA regulated by ModE in Escherichia coli. (2009)
  • Author(s): 平松優和・小笠原寛・石浜明・山本兼由
  • Organizer: 第32回日本分子生物学会年会
  • Place of Presentation: パシフィコ横浜(横浜)
• [Presentation] モリブデンを感知する転写因子ModEに制御される新規非翻訳RNA (2009)
  • Author(s): 平松優和・小笠原寛・石浜明・山本兼由
  • Organizer: 第82回日本生化学会大会
  • Place of Presentation: 神戸ポートピア(神戸)
• [Presentation] Autoregulation of the murR repressor that regulate the enzymes for the degradation of N-acetylymuramic acid in Escherichia coli. (2009)
  • Author(s): 山本兼由・石浜明
  • Organizer: 第32回日本分子生物学会年会
  • Place of Presentation: パシフィコ横浜(横浜)
• [Presentation] Genomic SELEX search for regulation targets by 100 species of uncharacterized transcription factors from E. coli (2009)
  • Author(s): Ishihama, A
  • Organizer: 12^<th> Transcription Assembly
  • Place of Presentation: Chandigarh, India
• [Presentation] Comprehensive analysis for the recognition sequences of DNA-binding transcription factors within the E. coli genome using the newly developed 'Promoter Chip' (2009)
  • Author(s): Yamamoto, K., Shimada, T. and Ishihama, A
  • Organizer: 21st RNA Polymerase Workshop
  • Place of Presentation: Bristol, UK
• [Presentation] 嫌気条件で誘導される大腸菌新規核様体タンパク質 (2009)
  • Author(s): 寺本潤、吉村成弘、竹安邦夫、石浜明
  • Organizer: 定領域研究「バイオ操作」第7回公開シンポジウム
  • Place of Presentation: エレクトローンホール宮城・仙台
• [Presentation] 大腸菌転写因子YpdB支配下制御遺伝子群の同定と制御機構の解明 (2009)
  • Author(s): 稲葉達也、山田佳代子、郡彩子、石浜明
  • Organizer: 日本ゲノム微生物学会第3回年会
  • Place of Presentation: 中央大学・東京
• [Presentation] Quorum Sensing転写因子QseAの調節機能の解析 (2009)
  • Author(s): 小林尚貴、寺本潤、石浜明
  • Organizer: 日本ゲノム微生物学会第3回年会
  • Place of Presentation: 中央大学・東京
• [Presentation] Genomic SELEXを用いた大腸菌転写因子LeuOの転写制御機構解析 (2009)
  • Author(s): 島田友裕、山本兼由、石浜明
  • Organizer: 日本ゲノム微生物学会第3回年会
  • Place of Presentation: 中央大学・東京
• [Presentation] 大腸菌ゲノム転写の包括制御 (2009)
  • Author(s): 石浜明
  • Organizer: 特定領域研究「バイオ操作」第7回公開シンポジウム
  • Place of Presentation: ユレクトローンホール宮城・仙台
• [Presentation] 多因子が関与する大腸菌Curli線毛発現制御機構の解明 (2009)
  • Author(s): 小笠原寛, 郡彩子, 山田佳代子, 山本兼由, 石浜明
  • Organizer: 日本農芸化学会2009年度大会
  • Place of Presentation: 国際会議場・福岡
• [Presentation] ウラシル/チミンを感知する転写因子RutRによるピリミジン合成/分解経路に関与する遺伝子群の制御機構の解析 (2009)
  • Author(s): 島田友裕、平尾貴世、郡彩子、山本兼由、石浜明
  • Organizer: 日本農芸化学会2009年度大会
  • Place of Presentation: 国際会議場・福岡
• [Presentation] 新規ゲノム研究資材を用いたゲノム機能解析 (2008)
  • Author(s): 山本兼由、石浜明
  • Organizer: 日本農芸化学会2008年関東支部大会
  • Place of Presentation: 山梨大学・甲府
  • Year and Date: 2008-10-11
• [Presentation] 大腸菌における全りボゾーム蛋白質遺伝子の発現解析 (2008)
  • Author(s): 梅林章、片寄純也、石浜明、前田理久
  • Organizer: 日本農芸化学会2008年関東支部大会
  • Place of Presentation: 山梨大学・甲府
  • Year and Date: 2008-10-11
• [Presentation] 還元条件下における大腸菌センサーキナーゼ活性の変化 (2008)
  • Author(s): 山本兼由
  • Organizer: 第7回微生物研究会
  • Place of Presentation: 東京工業大学・横浜
  • Year and Date: 2008-06-14
• [Presentation] 20 years of progress with RNA polymerase. (2008)
  • Author(s): Ishihama, A.
  • Organizer: 20 th RNA Polymerase Workshop.
  • Place of Presentation: York, UK
• [Presentation] Multi-factor promoters and multi-factor networks. (2008)
  • Author(s): Ishihama, A.
  • Organizer: 20 th RNA Polymerase Workshop.
  • Place of Presentation: York, UK
• [Presentation] Multi-scale genetics towards understanding the regulatory roles of all transcription factors from a single organism Escherichia coli. Asian Conference on Transcription (ACT) (2008)
  • Author(s): Ishihama, A.
  • Organizer: 10th Meeting, Jan.
  • Place of Presentation: Bangalore, India
• [Presentation] Transcription factor-promoter interaction networks. (2008)
  • Author(s): Ishihama, A.
  • Organizer: 2005 Internatl. Symp. Micro-Nano Mechatronics & Human Science
  • Place of Presentation: Nagoya, Japan.
• [Presentation] 20 years of progress with RNA polymerase (2008)
  • Author(s): Akira ISHIHAMA
  • Organizer: 20^<th> RNA Polymerase Workshop
  • Place of Presentation: York, UK
• [Presentation] Multi-factor promoters and multi-factor networks. (2008)
  • Author(s): Ishihama, A., Ogasawara, H., Shimada, T., Teramoto, J., Hasegawa, A., Umezawa, Y., Kori, A., Yamada, K. and Yamamoto, K.
  • Organizer: 20^<th> RNA Polymerase Workshop
  • Place of Presentation: York, UK
• [Presentation] Single live-cell assay of promoter activity and regulation. (2008)
  • Author(s): Teramoto, J., Hasegawa, A., Shohata, E., Kori, A., Magdy, E-S. H. Nakajima, M., Lin, Y-C., Yamanishi, Y., Magariyama, Y, Arai,F., Fukuda, T. and Ishihama, A.
  • Organizer: Micro-Nano Mechatronics Human Sci. Symp.
  • Place of Presentation: Nagoya, Japan
• [Presentation] Distribution of a DNA-binding Protein using the Novel 'Promoter Chip' (2008)
  • Author(s): Yamamoto, K. and Ishihama, A.
  • Organizer: Micro-Nano Mechatronics Human Sci. Symp.
  • Place of Presentation: Nagoya, Japan
• [Presentation] On-chip temperature sensing and control for cell immobilization and culture system (2008)
  • Author(s): Yamaristj Y, Chow, E, Teramdo, J., Magariyarta, Y., Ishisma, A, Ftiatia, T and Arai, F
  • Organizer: Micro-Nano Mechatronics Human Sci. Symp.
  • Place of Presentation: Napova, Japan
• [Presentation] Global regulation of genome transcription : Multi-factor promoters and multi-factor networks (2008)
  • Author(s): Ishihama, A
  • Organizer: 2008 Asian Academic Seminar(AAS)
  • Place of Presentation: Bangalore, India
• [Presentation] Stress response to sub-lethal metals in Escherichia coli (2008)
  • Author(s): Yamamoto, K
  • Organizer: 2008 Asian Academic Seminar(AAS)
  • Place of Presentation: Bangalore, India
• [Presentation] 単一細胞観測系による大腸菌遺伝子プロモーター強度測定 (2008)
  • Author(s): 寺本潤、長谷川明子、E-SH Magdy、郡彩子、中島正博、林育菁、小笠原寛、新労史人、福田敏男、石浜明
  • Organizer: 特定領域研究「バイオ操作]第6回公開シンポジウム
  • Place of Presentation: キャンパスプラザ・京都
• [Presentation] 大腸菌転写因子AsoGの制御機能の解明 (2008)
  • Author(s): 石田雄士, 郡彩子, 石浜明
  • Organizer: 2008年日本ゲノム微生物学会若手の会
  • Place of Presentation: 大学セミナーハウス・八王子
• [Presentation] 大腸菌csgDプロモーターの制御 : 原核生物の多因子支配プロモーター (2008)
  • Author(s): 小笠原寛, 郡彩子, 山田佳代子, 山本兼由, 石浜明
  • Organizer: 2008年日本ゲノム微生物学会若手の会
  • Place of Presentation: 大学セミナーハウス・八王子
• [Presentation] Genomio SELEXとCh1P-chip法による大腸菌機能未知転写因子YcdCのゲノム上結合領域の同定 (2008)
  • Author(s): 島田友裕、Grainger. D.、Busby, S.J. W. 山本兼由、石浜明
  • Organizer: 2008年日本ゲノム微生物学会若手の会
  • Place of Presentation: 大学セミナ-ハウス・八王子
• [Presentation] ポリマー製マイクロブリッジを用いた細胞固定培養システム (2008)
  • Author(s): 山西陽子、寺本潤、曲山幸生、石浜明、福田敏男、新井史人
  • Organizer: 第18回化学とマイクロ・ナノシステム研究会
  • Place of Presentation: 京都大学・京都
• [Presentation] 植物由来の配糖体取り込み系を制御する大腸菌転写因子AscGの機能解明 (2008)
  • Author(s): 石田雄士、郡彩子、石浜明
  • Organizer: 第31回日本分子生物学会年会第81回日本生化学会大会
  • Place of Presentation: 国際展示場・神戸
• [Presentation] 大腸菌転写因子YpdBによる制御遺伝子の同定と制御機構の解明 (2008)
  • Author(s): 稲葉達也、山田佳代子、郡彩子、石浜明
  • Organizer: 第31回日本分子生物学会年会第81回日本生化学会大会
  • Place of Presentation: 国際展示場・神戸
• [Presentation] 多因子が関与するCurli繊毛発現調節の分子機構の解明 (2008)
  • Author(s): 小笠原寛、山田佳代子、郡彩子、山本兼由、石浜明
  • Organizer: 第31回日本分子生物学会年会第81回日本生化学会大会
  • Place of Presentation: 国際展示場・神戸
• [Presentation] Quorum Sensing転写因子QseAの調節機能の解析 (2008)
  • Author(s): 小林尚貴、寺本潤、山田佳代子、石浜明
  • Organizer: 第31回日本分子生物学会年会第81回日本生化学会大会
  • Place of Presentation: 国際展示場・神戸
• [Presentation] ChlP-chip法による大腸菌転写因子RutRのゲノム上結合領域の同定 (2008)
  • Author(s): 島田友裕、石浜明、Busby, S.J.W., Grainger, D.
  • Organizer: 第31回日本分子生物学会年会第81回日本生化学会大会
  • Place of Presentation: 国際展示場・神戸
• [Presentation] 大腸菌の嫌気条件下発現新規核様体蛋白質の同定と特性解析 (2008)
  • Author(s): 寺本潤、吉村成弘、郡彩子、竹安邦夫、石浜明
  • Organizer: 第31回日本分子生物学会年会第81回日本生化学会大会
  • Place of Presentation: 国際展示場・神戸
• [Presentation] 定常期におけるポリアミンの大腸菌の生存率維持に果たす役割 (2008)
  • Author(s): 照井祐介、東恭平、田部井譲、秋山真律子、富取秀行、山本兼由、石浜明、五十嵐一衛、柏木敬子
  • Organizer: 第31回日本分子生物学会年会第81回日本生化学会大会
  • Place of Presentation: 国際展示場・神戸
• [Presentation] Multi-Scale Genetics towards Understanding the Regulatory Roles of All Transcription Factors from a Single Organism Escherichra coli (2008)
  • Author(s): A, Ishihama
  • Organizer: 10th Asian Conference on Transcription
  • Place of Presentation: Bangalore, India
• [Presentation] Identification of a Novel Nucleoid Protein(NNP)with Enhancing Activity of Nuclease Sensitivity in Escherichia coli Grown under Anaerobic Conditions (2008)
  • Author(s): J. Teramoto, N. Kobayashi, A. Kori and A. Ishihama
  • Organizer: 10th Asian Conference on Transcription
  • Place of Presentation: Bangalore, India
• [Presentation] RutR is the Uracil/Thymine Sensing Master Regulator of a Set of Genes for Synthesis and Degradation of Pyrimidines (2008)
  • Author(s): Shimada, T., Hirao, K., Kori, A., Yamamoto, K. and Ishihama, A.
  • Organizer: 10th Asian Conference on Transcription
  • Place of Presentation: Bangalore, India
• [Presentation] Transcriptional Response of Escherichia coli to External Metals (2008)
  • Author(s): K. Yamamoto and A, Ishihama
  • Organizer: 10th Asian Conference on Transcription
  • Place of Presentation: Bangalore, India
• [Presentation] 20 years of progress with RNA polymerase (2008)
  • Author(s): A. Ishihama
  • Organizer: 20th RNA Polymerase Workshop
  • Place of Presentation: York, UK
• [Presentation] Multi-factor promoters and multi-factor networks (2008)
  • Author(s): Ishihama, A., Ogasawara, H., Shimada, T., Teramoto, J., Hasegawa, A., Umezawa, Y., Yabuki, K., Ishida, Y., Inaba, T., Kori, A., Yamada, K. and Yamamoto, K
  • Organizer: 20th RNA Polymerase Workshop
  • Place of Presentation: York, UK
• [Presentation] 大腸菌金属感知転写因子群のGenomic SELEX法による機能解析 (2008)
  • Author(s): 小笠原 寛、渡邊智行、跡部裕之、片山泰徳、山田 佳代子、郡 彩子、山本兼由、石浜 明
  • Organizer: 第二回日本ゲノム微生物学会年会
  • Place of Presentation: 大阪大学、大阪
• [Presentation] ウラシル/チミンを感知する転写因子RutRによるピリミジン合成/分解経路に関与する遺伝子群の制御機構の解析 (2008)
  • Author(s): 島田 友裕、平尾 貴世、郡 彩子、山本 兼由、石浜 明
  • Organizer: 第二回日本ゲノム微生物学会年会
  • Place of Presentation: 大阪大学、大阪
• [Presentation] 細菌の金属ストレスに対する転写応答の包括的な制御機構 (2008)
  • Author(s): 山本兼由、石浜 明
  • Organizer: 日本農芸化学会大会
  • Place of Presentation: 名城大学、名古屋
• [Presentation] ゲノムの転写制禦:ひとつの生物のすべての転写因子の調節機能同定の試み (2007)
  • Author(s): 石浜明
  • Organizer: 第30回日本分子生物学会・第80回日本生化学会マスターズレクチャー
  • Place of Presentation: パシフィコ横浜、横浜
• [Presentation] 細菌の環境金属応答の転写包括制御 (2007)
  • Author(s): 石浜明・山本兼由・小笠原寛・島田友裕・寺本潤
  • Organizer: 第30回日本分子生物学会・第80回日本生化学会ワークショップ「金属イオンのChemical Biology」
  • Place of Presentation: パシフィコ横浜、横浜
• [Presentation] Multi-scale genetics of transcription network: Understanding the regulatory roles of all 300 transcription factors from a single organism Escherichia coli. (2007)
  • Author(s): Ishihama, A.
  • Organizer: 2007 Micro-Nano Mechatronics and Human Science Symp.
  • Place of Presentation: Nagoya Univ.
• [Presentation] RutR is the uracil/thymine sensing regulator of a set of genes forsynthesis and degradation of pyrimidines (2007)
  • Author(s): T. Shimada, K. Hirao, A. Kori, K. Yamamoto, D. C. Grainger, S.J.W. Busby and A. Ishihama
  • Organizer: RNA Polymerase Workshop
  • Place of Presentation: London, UK
• [Presentation] Involvement of RNA binding protein Hfq in the post-transcriptionairegulation of invE gene expression in Shigella sonnei (2007)
  • Author(s): J. Mitobe, T. Morita-lshihara, A. Ishihama and H. Watanabe
  • Organizer: US-Japan Conference on Pathogenic Bacteria
  • Place of Presentation: Washington, USA
• [Presentation] Multi-Scale Genetics of Transcription Network: Understanding the Regulatory Roles of All 300 Transcription Factors from a Single Organism Escherichia coli (2007)
  • Author(s): A. Ishihama, H. Ogasaawra, J. Teramoto, T. Shimada, A. Hasegawa, Y. Umezawa, K. Yabuki, Y. Ishida, T. Inaba, A. Kori, K. Yamada, Y. Kitai, N. Kobayashi, D. Katoand K. Yamamoto
  • Organizer: 2007 Micro-Nano Mechatronics and Human Science Symp
  • Place of Presentation: Nagoya, Japan
• [Presentation] Construction of a Novel 'Promoter Chip'for DNA Microarray (2007)
  • Author(s): K. Yamamoto and A. Ishihama
  • Organizer: 2007 Micro-Nano Mechatronics and Human Science Symp
  • Place of Presentation: Nagoya, Japan
• [Presentation] 大腸菌全転写因子の調節機能解明:PdhRとYhfRの機能解析 (2007)
  • Author(s): 石田雄士、小笠原 寛、山本兼由、石浜 明
  • Organizer: 第1回日本ゲノム微生物学会年会
  • Place of Presentation: かずさアカデミアパーク、千葉
• [Presentation] 大腸菌単一細胞のプロモーター強度の測定 (2007)
  • Author(s): 寺本 潤、長谷川明子、曲山幸生、市川明彦、Elshimy Haitham、新井史人、福田敏男、石浜 明
  • Organizer: 第1回日本ゲノム微生物学会年会
  • Place of Presentation: かずさアカデミアパーク、千葉
• [Presentation] 宿主環境への細菌の適応に関与する共通遺伝子群の探索 (2007)
  • Author(s): 皆川 周、藺牟田結衣、澤田真嗣、山本兼由、石浜明、後藤直正
  • Organizer: 第1回日本ゲノム微生物学会年会
  • Place of Presentation: かずさアカデミアパーク、千葉
• [Presentation] 嫌気条件でクエン酸に応答する大腸菌センサーキナーゼCitAの活性化機構 (2007)
  • Author(s): 山本兼由、大島 拓、藤田信之, 小笠原直毅、石浜 明
  • Organizer: 第1回日本ゲノム微生物学会年会
  • Place of Presentation: かずさアカデミアパーク、千葉
• [Presentation] ピルビン酸応答転写制御因子PdhRの機能解析 (2007)
  • Author(s): 小笠原 寛, 石田雄司, 山田佳代子, 石浜 明
  • Organizer: 日本農芸化学会
  • Place of Presentation: 東京大学、東京
• [Presentation] ピルビン酸応答転写制御因子PdhRの転写抱括制御機能 (2007)
  • Author(s): 小笠原 寛, 石田雄司, 山田佳代子, 山本兼由, 石浜 明
  • Organizer: 第4回大腸菌研究会
  • Place of Presentation: 藤枝エミナース、静岡
• [Presentation] ウラシル/チミンを感知する転写因子RutRによるピリミジン合成/分解経路に関与する遺伝子群の制御機構の解析 (2007)
  • Author(s): 島田 友裕・平尾 貴世・郡 彩子・山本 兼由・石浜 明
  • Organizer: 第4回大腸菌研究会
  • Place of Presentation: 藤枝エミナース、静岡
• [Presentation] 大腸菌単-細胞観測系の構築とプロモーター強度測定 (2007)
  • Author(s): 長谷川明子、寺本 潤、曲山幸生、新井史人、福田敏男、石浜 明
  • Organizer: 特定領域研究「バイオ操作」女性シンポジウム
  • Place of Presentation: 法政大学、東京
• [Presentation] Genomic SELEX法による大腸菌転写因子標的プロモーターの探索 (2007)
  • Author(s): 小笠原 寛、島田友祐、寺本 潤、長谷川明子、梅澤喜正、矢吹光史郎、石田雄士、稲葉達也、鍛代悠一、加藤大策、小林尚貴、山田佳代子、郡 彩子、山本兼由、石浜 明
  • Organizer: 2007年日本ゲノム微生物学会若手の会
  • Place of Presentation: 八王子セミナーハウス、東京
• [Presentation] ゲノムの転写制禦:ひとつの生物のすべての転写因子の調節機能同定の試み (2007)
  • Author(s): 石浜 明
  • Organizer: 第30回日本分子生物学会・第80回日本生化学会マスターズレクチャー
  • Place of Presentation: みなとみらい、横浜
• [Presentation] 細菌の環境境金属応答の転写包括制御 (2007)
  • Author(s): 石浜 明、山本兼由、小笠原 寛、島田友裕、寺本 潤
  • Organizer: 第30回日本分子生物学会・第80回日本生化学会ワークショップ「金属イオンのChemical Biology」
  • Place of Presentation: みなとみらい、横浜
• [Presentation] 大腸菌転写因子TorRの新規標的遺伝子群の探索と制御機構 (2007)
  • Author(s): 稲葉達也、寺本 潤、三木健良、石浜 明
  • Organizer: 第30回日本分子生物学会・第80回日本生化学会
  • Place of Presentation: みなとみらい、横浜
• [Presentation] 大腸菌機能未知転写因子YdhMの転写調節機能の解明 (2007)
  • Author(s): 梅澤喜正、小笠原 寛、山田佳代子、三木健良、石浜 明
  • Organizer: 第30回日本分子生物学会・第80回日本生化学会
  • Place of Presentation: みなとみらい、横浜
• [Presentation] 大腸菌核様体構造蛋白質H-NSのゲノム包括制御における役割 (2007)
  • Author(s): 矢吹光史郎、島田友裕、三木健良、石浜 明
  • Organizer: 第30回日本分子生物学会・第80回日本生化学会
  • Place of Presentation: みなとみらい、横浜
• [Presentation] 大腸菌新規核様体タンパク質の同定 (2007)
  • Author(s): 寺本 潤.吉村成弘、郡 彩子、竹安邦夫、石浜 明
  • Organizer: 第30回日本分子生物学会・第80回日本生化学会
  • Place of Presentation: みなとみらい、横浜
• [Presentation] Gurli繊毛発現調節の分子機構の解明 (2007)
  • Author(s): 小笠原 寛、山田佳代子、郡 彩子、山本兼由、石浜 明
  • Organizer: 第30回日本分子生物学会・第80回日本生化学会
  • Place of Presentation: みなとみらい、横浜
• [Presentation] 大腸菌単一細胞観測系の構築とプロモーター強度測定 (2007)
  • Author(s): 長谷川明子、寺本 潤、郡 彩子、曲山幸生、El-Shimy H. Magdy, 、中島正博、林 育菁、新井史人、福田敏男、石浜 明
  • Organizer: 第30回日本分子生物学会・第80回日本生化学会
  • Place of Presentation: みなとみらい、横浜
• [Presentation] ウラシル/チミンを感知する転写因子RutRによるピリミジン合成/分解経路に関与する遺伝子群の制御機構の解析 (2007)
  • Author(s): 島田友裕、平尾貴世、郡 彩子、山本兼由、石浜 明
  • Organizer: 第30回日本分子生物学会・第80回日本生化学会
  • Place of Presentation: みなとみらい、横浜
• [Presentation] マルチスケール遺伝学:大 腸菌全転写因子の機能同定 (2006)
  • Author(s): 石浜明
  • Organizer: シンポジウム「マルチスケール操作によるシステム細胞工学」
  • Place of Presentation: 名古屋大学野依学術交流館
  • Year and Date: 2006-06-30
• [Presentation] Transcription in E. coli: the big picture. (2005)
  • Author(s): Ishihama, A.
  • Organizer: UK Integrated Biology of Escherichia coli Meeting
  • Place of Presentation: Birmingham, UK
  • Year and Date: 2005-12-30
• [Presentation] ゲノム転写包括制御研究の戦略と戦術 (2005)
  • Author(s): 石浜明
  • Organizer: 東京大学化学生命工学セミナー
  • Place of Presentation: 東京大学、東京
• [Presentation] ノム全遺伝子で対応する細菌の環境応答 (2005)
  • Author(s): 石浜明
  • Organizer: 特定領域研究「バイオ操作」第1回公開シンポジウム
  • Place of Presentation: 東京大学、東京
• [Presentation] Genomic SELEX search for the genes and promoters under the control of E. (2005)
  • Author(s): Ishihama, A.
  • Organizer: coli transcription factors. Transcription Assembly
  • Place of Presentation: Hyderabad, India
• [Book] The Nucleoid:an Overview.(A. Beak, R .Curtiss III, J. B. Kaper, P. D. Karp, F. C. Neidhardt, T.Nystree, J. M. Slauch, C. L. Squires, and D. Ussery, eds., In:EcoSal-Escherichia coliand Salmonella:cellular and molecular biology., Chapter 2.6) (2009)
  • Author(s): Ishihama, A.
  • Publisher: ASM Press
  • URL: http://www.ecosal.org
• [Book] EcoSal-Escherichia coli and Salmonella : cellular and molecular biology. (2009)
  • Author(s): Ishihama, A.
  • Publisher: ASM (American Society for Mibrobiology) Press
• [Book] Escherichia coli and Salmonella (2009)
  • Author(s): Ishihama, A
  • Total Pages: 1050
  • Publisher: American Society for Microbiology(ASM), Washington, USA
• [Book] Escherichia coli and Salmonella (2008)
  • Author(s): A. Ishihama and S. Adhya
  • Publisher: American Society of Microbiology
• [Book] Methods in Enzymology, Vol. 422 (2007)
  • Author(s): Okada, A., Gotoh, Y., Watanabe, T., Furuta, E., Yamamto, K. and Utsumi, R.
  • Publisher: Elsevier
• [Book] Escherichia coli and Salmonella Cellular and Molecular Biology (2007)
  • Author(s): Ishihama, A.
  • Publisher: American Society for Microbiology Press, Washington, DC(In press)
• [Book] バイオインフォマティクス事典 (2007)
  • Author(s): 石浜 明
  • Publisher: 共立出版,東京(印刷中)
• [Book] タンパク質の事典 (2007)
  • Author(s): 石浜 明
  • Publisher: 朝倉書店、東京(印刷中)
• [Book] タンパク質化学 (2007)
  • Author(s): 石浜 明
  • Publisher: 広川書店、東京(印刷中)
• [Book] Micro-Nano Mechatronics and Human Science (2005)
  • Author(s): Ishihama, A., Shimada, T., Ogasawara, H., Teramoto, J., Yamamoto, K
  • Total Pages: 130
  • Publisher: Transcription factor-promoter interaction networks