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Links Between S-phase and M-phase Mediated by Fork Protection Complex

Research Project

Project/Area Number 17080001
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionTokyo Institute of Technology

Principal Investigator

SHIRHIGE Katsuhiko  Tokyo Institute of Technology, 大学院・生命理工学研究科, 連携教授 (90273854)

Project Period (FY) 2005 – 2009
Project Status Completed (Fiscal Year 2009)
Budget Amount *help
¥84,900,000 (Direct Cost: ¥84,900,000)
Fiscal Year 2009: ¥17,000,000 (Direct Cost: ¥17,000,000)
Fiscal Year 2008: ¥25,500,000 (Direct Cost: ¥25,500,000)
Fiscal Year 2007: ¥17,000,000 (Direct Cost: ¥17,000,000)
Fiscal Year 2006: ¥12,700,000 (Direct Cost: ¥12,700,000)
Fiscal Year 2005: ¥12,700,000 (Direct Cost: ¥12,700,000)
KeywordsDNAチップ / 染色体分配 / 染色体動態 / 染色体複製 / 複製チェックポイント / ヘリカーゼ / MCM複合体 / チェックポイント因子 / ラギング鎖 / リーディング鎖 / ポリメラーゼ / 複製停止
Research Abstract

DNA replication checkpoint plays a crucial role for the maintenance of genome integrity. With the help of research grant, we have found that replication checkpoint mediator complex (that consists of Tof1, Mrc1, and Csm3) is a key linker between DNA polymerase and helicase. This function as a linker is important for proper mediator function to sense different types of replication stress for the activation of the DNA replication checkpoint and protection of the replisome.

Report

(6 results)
  • 2009 Annual Research Report   Final Research Report ( PDF )
  • 2008 Annual Research Report
  • 2007 Annual Research Report
  • 2006 Annual Research Report
  • 2005 Annual Research Report
  • Research Products

    (41 results)

All 2010 2009 2008 2007 2006 2005 Other

All Journal Article (38 results) (of which Peer Reviewed: 29 results) Presentation (2 results) Remarks (1 results)

  • [Journal Article] SCF(Dia2) regulates DNA replication forks during S-phase in budding yeast.2009

    • Author(s)
      S. Mimura, M. Komata, T. Kishi, K. Shirahige, T. Kamura
    • Journal Title

      EMBO J. 28

      Pages: 3693-3705

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Csm3, Tof1, and Mrc1 form a heterotrimeric mediator complex that associates with DNA replication forks.2009

    • Author(s)
      M. B, o, Y.M. Katou, M. Komata, H. Tanaka, T. Itoh, T. Sutani,, K. Shirahige
    • Journal Title

      J Biol Chem. 284

      Pages: 34355-34365

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] ChIP-on-Chip Analysis of DNA Topoisomerases.2009

    • Author(s)
      R. Bermejo, Y.M. Katou, K. Shirahige,, M. Foiani
    • Journal Title

      Methods Mol Biol. 582

      Pages: 103-118

    • Related Report
      2009 Final Research Report
  • [Journal Article] Involvement of a chromatin remodeling complex in damage tolerance during DNA replication Nat.2009

    • Author(s)
      K.B. Falbo*, C. Alabert*, Y. Katou*, S. Wu, J. Han, T. Wehr, J. Xiao, X. He, Z. Zhang, Y. Shi, K. Shirahige, P. Pasero,, X. Shen
    • Journal Title

      Struct. Mol. Biol. 16

      Pages: 1167-1172

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Genome-Organizing Factors Top2 and Hmo1 Prevent Chromosome Fragility at Sites of S phase Transcription Cell2009

    • Author(s)
      R. Bermejo, T. Capra, V. Gonzales-Huici, D. Fachinetti, A. Cocito, G. Natoli, Y. Katou, H. Mori, K. Kurokawa, K. Shirahige,, M. Foiani
    • Journal Title

      138

      Pages: 870-884

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] The Direct Binding of Mrc1, a Checkpoint Mediator, to Mcm6, a Replication Helicase, is Essential for Replication Checkpoint Against Methyl Methanesulfonate-induced Stress.2009

    • Author(s)
      M. Komata, M. B, o, H. Araki,, K. Shirahige
    • Journal Title

      Mol. Cell. Biol. 29

      Pages: 5008-5019

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Rec8 guides canonical Spo11 distribution along yeast meiotic chromosomes.2009

    • Author(s)
      K. Kugou, T. Fukuda, S. Yamada, M. Ito, H. Sasanuma, S. Mori, Y. Katou, T. Itoh, K. Matsumoto, T. Shibata, K. Shirahige,, K. Ohta
    • Journal Title

      Mol Biol Cell. 20

      Pages: 3064-3076

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Ctf4 coordinates the progression of helicase and DNA polymerase alpha.2009

    • Author(s)
      H. Tanaka, Y. Katou, M. Yagura, K. Saitoh, T. Itoh, H. Araki, M. B, o#,, K. Shirahige#
    • Journal Title

      Genes Cells. 14

      Pages: 807-820

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Budding Yeast Wpl1(Rad61)-Pds5 Complex Counteracts Sister Chromatid Cohesion- Establishing Reaction.2009

    • Author(s)
      T. Sutani, T. Kawaguchi, R. Kanno, T. Itoh,, K. Shirahige
    • Journal Title

      Curr. Biol. 19

      Pages: 492-497

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] The Direct Binding of Mrc1, a Checkpoint Mediator, to Mcm6, a Replication Helicase, is Essential for Replication Checkpoint Against Methyl Methanesulfonate-induced Stress2009

    • Author(s)
      M.Komata, M.Bando, H.Araki, K.Shirahige
    • Journal Title

      Mol Biol Cell. 29

      Pages: 5008-5019

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Involvement of a chromatin remodeling complex in damage tolerance during DNA replication2009

    • Author(s)
      K.B.Falbo, C.Alabert, Y.Katou, S.Wu, J.Han, T.Wehr, J.Xiao, X.He, Z.Zhang, Y.Shi, K.Shirahige, P.Pasero, X.Shen
    • Journal Title

      Nat.Struct.Mol.Biol. 16

      Pages: 1167-1172

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] SCF(Dia2)regulates DNA replication forks during S-phase in budding yeast2009

    • Author(s)
      S.Mimura, M.Komata, T.Kishi, K.Shirahige, T.Kamura
    • Journal Title

      Embo J 28

      Pages: 3693-3705

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] H. Tanaka#, Y. Katou#, M. Yagura, K. Saitoh, T. Itoh, H. Araki, M. Bando* and K. Shirahige*2009

    • Author(s)
      H. Tanaka#, Y. Katou#, M. Yagura, K. Saitoh, T. Itoh, H. Araki, M. Bando* and K. Shirahige*
    • Journal Title

      Genes Cells (In press)

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Rad51 suppresses gross chromosomal rearrangement at centromere in Schizosaccharomyces pombe.2008

    • Author(s)
      K. Nakamura, A. Okamoto, Y. Katou, C. Yadani, T. Shit, a, C. Kaweeteerawat, T.S. Takahashi, T. Itoh, K. Shirahige, H. Masukata,, T. Nakagawa
    • Journal Title

      EMBO J. 27

      Pages: 3036-3046

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Balance between distinct HP1 family proteins controls heterochromatin assembly in fission yeast.2008

    • Author(s)
      M. Sadaie, R. Kawaguchi, Y. Ohtani, F. Arisaka, K. Tanaka, K. Shirahige, J. Nakayama
    • Journal Title

      Mol Cell Biol. 28

      Pages: 6973-6988

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] polymeraseεfunction together in linking DNA replication and the S phase checkpoint Mol.2008

    • Author(s)
      H. Lou, M. Komata, Y. Katou, Z. Guan, C.C. Reis, M. Budd, K. Shirahige, J.L. Campbell1, Mrc1, DNA
    • Journal Title

      Cell 32

      Pages: 106-117

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Nutrient-regulated antisense and intragenic RNAs modulate a signal transduction pathway in yeast2008

    • Author(s)
      M. Nishizawa, T. Komai, Y. Katou, K. Shirahize, T. Itoh, and A. Toh-E
    • Journal Title

      PLoS Biol 6

      Pages: 2817-2830

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Balance between distinct HP1 family proteins controls heterochromatin assembly in fission yeast2008

    • Author(s)
      M. Sadaie, R. Kawaguchi, Y. Ohtani,F. Aiisaka, K. Tanaka, K. Shirahige, J. Nakayama
    • Journal Title

      Mol Cell Biol 28

      Pages: 6973-6988

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A DNA polymerase alpha accessory protein, Mcll, is required for propagation of centromere structures in fission yeast2008

    • Author(s)
      T. Natsume, Y. Tsutsui, T. Sutani, E. M. Dunleavy, A.L. Pidoux, H. Iwasaki, K. Shirahige, R.C. Allshire, F. Yamao
    • Journal Title

      PLoS ONE 3

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A DNA Polymerase {lower case alpha} Accessory Protein, Mcll, is Required for Propagation of Centromere Structures in Fission Yeast.2008

    • Author(s)
      Toyoaki Natsume, Yasuhiro Tsutsui, Takashi Sutani, Elaine M.Dunleavy, Alison L. Pidoux, Hiroshi Iwasaki, Katsuhiko Shirahige, Robin C. Allshire, Fumiaki Yamao
    • Journal Title

      PLoS One In press

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Abnormality in initiation program of DNA replication is monitored by the highly repetitive rDNA array on chromosome XII in budding yeast, Mol.2007

    • Author(s)
      S. Ide, K. Watanabe, H. Watanabe, K. Shirahige, T. Kobayashi,, H. Maki
    • Journal Title

      Cell. Biol. 27

      Pages: 568-578

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Genome-wide localization of pre-RC sites and identification of replication origins in fission yeast.2007

    • Author(s)
      M. Hayashi, Y. Katou, T. Itoh, M. Tazumi, Y. Yamada, T. Takahashi, T. Nakagawa, K. Shirahige,, H. Masukata
    • Journal Title

      EMBO J. 26

      Pages: 1327-1339

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Displacement and re-accumulation of centromeric cohesin during transient pre-anaphase centromere splitting.2007

    • Author(s)
      M.T. Ocampo-Hafalla, Y. Katou, K. Shirahige, F. Uhlmann
    • Journal Title

      Chromosoma. 116

      Pages: 531-544

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Displacement and re-accumulation of centromeric cohesin during transient pre-anaphase centromere splitting.2007

    • Author(s)
      Ocampo-Hafalla MT, Katou Y, Shirahige K, Uhimann F.
    • Journal Title

      Chromosoma 116

      Pages: 531-544

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mrell mediates gene regulation in yeast spore development,2007

    • Author(s)
      Kugou K, Sasanuma H, Matsumoto K, Shirahige K, Ohta K.
    • Journal Title

      Genes Genet Syst 82

      Pages: 21-33

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genome-wide localization of pre-RC sites and identification of replication origins in fission yeast.2007

    • Author(s)
      Hayashi M, Katou Y, Itoh T, Tazumi A, Yamada Y, Takahashi T, Nakagawa T, Shirahige K, Masukata H.
    • Journal Title

      EMBO J. 26

      Pages: 1327-1339

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Abnormality in initiation program of DNA replication is monitored by the highly repetitive rDNA array on chromosome XII in budding yeast2007

    • Author(s)
      S.Ide, K.Watanabe, H.Watanabe, K.Shirahige, T.Kobayashi, H.Maki
    • Journal Title

      Mol. Cell. Biol. 27

      Pages: 568-578

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Perturbation of the activity of replication origin by meiosis specific transcription2007

    • Author(s)
      S.Mori, K.Shirahige
    • Journal Title

      J. Biol. Chem. 282

      Pages: 4447-4452

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Meiotic recombination-related DNA synthesis and its implications for cross-over and non-cross-over recombinant formation.2007

    • Author(s)
      M.Terasawa, H.Ogawa, Y.Tsukamoto, Shinohara, K.Shirahige, N.Kleckner, T.Ogawa
    • Journal Title

      Proc Natl Acad Sci U S A. Mar 23

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Meiotic cohesins modulate chromosome compaction during meiotic prophase in fission yeast.2006

    • Author(s)
      D.Q. Ding, N. Sakurai, Y. Katou, T. Itoh, K. Shirahige, T. Haraguchi,, Y. Hiraoka.
    • Journal Title

      J Cell Biol. 174

      Pages: 499-508

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Establishment of Sister Chromatid Cohesion at the S. cerevisiae Replication Fork.2006

    • Author(s)
      A. Lengronne, J. McIntyre, Y. Katou, Y. Kanoh, K.P. Hopfner, K. Shirahige,, F. Uhlmann
    • Journal Title

      Mol Cell. 23

      Pages: 787-799

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Genomic Approach for the Understanding of Dynamic Aspect of Chromosome Behavior.2006

    • Author(s)
      Y. Katou, K. Kaneshiro, H. Aburatani,, K. Shirahige
    • Journal Title

      Methods in Enzymology, Elsevier Life Sciences (CA), vol. 409, chapter 23

      Pages: 389-410

    • Related Report
      2009 Final Research Report
  • [Journal Article] Different requirements for the association of ATR-ATRIP and 9-1-1 to the stalled replication forks.2006

    • Author(s)
      Y. Kanoh, K. Tamai,, K. Shirahige.
    • Journal Title

      Gene. 377

      Pages: 88-95

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Different requirements for the association of ATR-ATRIP and 9-1-1 to the stalled replication forks.2006

    • Author(s)
      Y.Kanoh, K.Tamai, K.Shirahige
    • Journal Title

      Gene 377

      Pages: 88-95

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Establishment of Sister Chromatid Cohesion at the S. cerevisiae Replication Fork.2006

    • Author(s)
      A.Lengronne, J.McIntyre, Y.Katou, Y.Kanoh, K.P.Hopfner, K.Shirahige, F.Uhlmann
    • Journal Title

      Mol Cell. 23

      Pages: 787-799

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Evidence that Loading of Cohesin Onto Chromosomes Involves Opening of Its SMC Hinge2006

    • Author(s)
      S.Gruber, P.Arumugam, Y.Katou, D.Kuglitsch, W.Helmhart, K.Shirahige, K.Nasmyth
    • Journal Title

      Cell 127

      Pages: 523-537

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Protein Phosphatase 2A protects centromeric sister chromatid cohesion.2006

    • Author(s)
      C.G.Riedel, V.L.Katis, Y.Katou, S.Mori, W.Helmhart, M.Galova, M.Petronczki, J.Gregan, B.Cetin, I.Mudrak, E.Ogris, K.Mechtler, L.Pelletier, F.Buchholz, K.Shirahige, K.Nasmyth
    • Journal Title

      Nature (article) (In press)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] A checkpoint control linking meiotic S phase and recombination initiation in fission yeast.2005

    • Author(s)
      Y. Tonami, H. Murakami, K. Shirahige,, M. Nakanishi.
    • Journal Title

      Proc. Natl. Acad. Sci. U.S.A. 102

      Pages: 5797-801

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Presentation] Role of Cohesin acetylation in transcription2010

    • Author(s)
      白髭克彦
    • Organizer
      International Conference on Radiation and Cancer Biology at Nagasaki 2010
    • Place of Presentation
      Nagasaki University Medical School, Matsumoto Ryojun Auditotturn, Bauduin Hall
    • Year and Date
      2010-02-20
    • Related Report
      2009 Annual Research Report
  • [Presentation] 複製と分配の連携機構の解明2009

    • Author(s)
      白髭克彦
    • Organizer
      遺伝学会シンポジウム
    • Place of Presentation
      信州大学
    • Year and Date
      2009-11-10
    • Related Report
      2009 Final Research Report
  • [Remarks]

    • URL

      http://www.iam.u-tokyo.ac.jp/chromosomeinformatics/index.html

    • Related Report
      2009 Final Research Report

URL: 

Published: 2005-04-01   Modified: 2018-03-28  

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