Analysis on regulatory factors and functional mechanisms for the initiator protein of the chromosomal replication
Project/Area Number |
17080005
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Research Category |
Grant-in-Aid for Scientific Research on Priority Areas
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Allocation Type | Single-year Grants |
Review Section |
Biological Sciences
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Research Institution | Kyushu University |
Principal Investigator |
TSUTOMU Katayama Kyushu University, 大学院・薬学研究院, 教授 (70264059)
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Project Period (FY) |
2005 – 2009
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Project Status |
Completed (Fiscal Year 2009)
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Budget Amount *help |
¥81,000,000 (Direct Cost: ¥81,000,000)
Fiscal Year 2009: ¥13,500,000 (Direct Cost: ¥13,500,000)
Fiscal Year 2008: ¥18,000,000 (Direct Cost: ¥18,000,000)
Fiscal Year 2007: ¥18,000,000 (Direct Cost: ¥18,000,000)
Fiscal Year 2006: ¥22,500,000 (Direct Cost: ¥22,500,000)
Fiscal Year 2005: ¥9,000,000 (Direct Cost: ¥9,000,000)
|
Keywords | DNA複製 / 複製開始 / DnaA / DiaA / ヘリカーゼ / DARS / 試験管内再構成 / タンパク質複合体 / タンパク質高次複合体 / 試験管内再構成系 / タンパク質高次復合体 / DNA 複製 / 細胞周期 / タンパク質高吹複合体 / タンパク質機能構造解析 / プロテオミクス / システム連携 / ネットワーク / クランプ / フィードバック制御 / ATP |
Research Abstract |
Initiation of the chromosomal DNA replication is a crucial reaction that regulates the cell proliferation. The active form of Escherichia coli DnaA protein initiates the chromosomal replication, whereas the inactive form does not. This study revealed for the first time that specific DNA sequences (termed DARS) on the chromosome directly activate DnaA. Moreover, it revealed molecular mechanisms in stimulation for the initiation reaction by the DnaA-binding protein DiaA and in post-initiational inactivation of DnaA by Hda protein.
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Report
(6 results)
Research Products
(165 results)
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[Journal Article] A common mechanism for the ATP-DnaA-dependent formation of open complexes at the replication origin.2008
Author(s)
Ozaki, S., Kawakami, H., Nakamura, K., Fujikawa, N., Kagawa, W., Park, S. -Y., Yokoyama, S., Kurumizaka, H., Katayama, T.
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Journal Title
J. Biol. Chem. 283
Pages: 8351-8362
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[Journal Article] Modes of over-initiation, dnaA gene expression and the inhibition of cell division in a novel cold-sensitive hda mutant in Escherichia coli J.2008
Author(s)
Fujimitsu, K., Su'etsugu, M., Yamaguchi, Y., Mazda, K., Fu, N., Kawakami, H., Katayama, T.
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Journal Title
Bacteriol. 190
Pages: 5368-5381
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[Journal Article] The interaction of DiaA and DnaA regulates the replication cycle in E. coli by directly promoting ATP-DnaA-specific initiation complexes2007
Author(s)
Keyamura, K., Fujikawa, N,, Ishida, T., Ozaki, S., Su'etsugu, M., Fujimitsu, K., Kagawa, W., Yokoyama, S., Kurumizaka, H., Katayama, T.
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Journal Title
Genes Dev. 21
Pages: 2083-2099
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[Journal Article] Structure and function of DnaA N-terminal domains: Specific sites and mechanisms in inter-DnaA interaction and in DnaB helicase loading on oriC2007
Author(s)
Abe, Y., Jo, T., Matsuda, Y., Matsunaga, C., Katayama, T., Ueda, T.
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Journal Title
J. Biol. Chem. 282
Pages: 17816-17827
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[Journal Article] Assignment of 1H, 13C and 15N resonances of N-terminal domains of DnaA protein2007
Author(s)
Abe, Y., Watanabe, N., Yoshida, Y., Ebata, F., Katayama, T., Ueda, T.
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Journal Title
Biomol. NMR Assign. 1
Pages: 57-59
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[Journal Article] The exceptionally tight affinity of DnaA for ATP/ADP requires a unique aspartic acid residue in the AAA+ sensor 1 motif2006
Author(s)
Kawakami, H., Ozaki, S., Suzuki, S., Nakamura, K., Senriuchi, T., Su'etsugu, M., Fujimitsu, K., Katayama, T.
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Journal Title
Mol. Microbiol. 62
Pages: 1310-1324
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[Journal Article] Involvement of the Escherichia coli folate-binding protein YgfZ in RNA modification and regulation of chromosomal replication initiation2006
Author(s)
Ote, T., Hashimoto, M., Ikeuchi, Y., Su'etsugu, M., Suzuki, T., Katayama, T., Kato, J.
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Journal Title
Mol. Microbiol. 59
Pages: 265-274
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[Journal Article] Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome.2005
Author(s)
Hishimoto, M., Ichimura, Y., Mizoguchi, H., Tanaka, K., Fujimitsu, K., Keyamura, K., Ote, T., Yamakawa, T., Yamazaki, Y., Mori, H., Katayama, T., Kato, J.
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Journal Title
Mol. Microbiol. 55
Pages: 137-149
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[Journal Article] Crystal structure of a biologically functional form of PriB from Escherichia coli reveals a potential single-stranded DNA-binding site. Biochem2005
Author(s)
Shioi, S., Ose, T., Maenaka, K., Shiroishi, M., Abe, Y., Kohda, D., Katayama, T., Ueda, T.
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Journal Title
Biophys. Res. Commun. 326
Pages: 766-776
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[Presentation] Novel fundamental mechanism regulating the replicational initiation in E. coli2009
Author(s)
Katayama, T., Keyamura, K., Fujimitsu, K., Ozaki, S., Shinozuka, S., Hatano, T., Niki, H.
Organizer
第32回日本分子生物学会ワークショップ「Frontier of Bacterial Cell Duplication」
Place of Presentation
横浜
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[Presentation] A novel initiation-stimulator DiaA directly promotes ATP-DnaA-specific initiation complexes in E. coli2008
Author(s)
Keyamura, K., Fujikawa, N., Ishida, T., Ozaki, S., Su'etsugu, M., Fujimitsu, K., Kagawa, W., Yokoyama, S., Kurumizaka, H., Katayama, T.
Organizer
Keysone Symposia in Molecular and Cellular Biology: DNA Replication and Recombination
Place of Presentation
Santa Fe, NM, USA
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[Presentation] Analysis on Mechanisms of ATP-DnaA Assembly on oriC and Duplex Unwinding2008
Author(s)
Katayama, T., Ozaki, S., Keyamura, K., Kawakami, H., Fujikawa, N., Kagawa, W., Nakamura, K., Fujimitsu, K., Su'etsugu, M., Yokoyama, S., Kurumizaka, H.
Organizer
EMBO Workshop on Replication & Segregation of Chromosomes
Place of Presentation
Geilo, Norway
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[Presentation] 新規因子DiaA蛋白質を含む, 複製開始複合体の構造とメカニズム2008
Author(s)
片山勉, 毛谷村賢司, 尾崎省吾, 藤川乃り映, 香川亘, 川上広宣, 中村賢太, 石田琢磨, 末次正幸, 藤光和之, 横山茂之, 胡桃坂仁志
Organizer
第8回蛋白質科学会年会ワークショップ「構造から理解するDNA結合タンパク質の機能」
Place of Presentation
東京都江戸川区
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[Presentation] Biochemical analysis of DnaA AAA+ domain on the ATP-dependent regulation for the initiation of chromosomal replication2007
Author(s)
Katayama, T., Ozaki, S., Kawakami, H., Nakamura, N., Keyamura, K., Fujikawa, N., Kagawa, W., Yokoyama, S., Kurumizaka, H.
Organizer
7th International Meeting on AAA Proteins
Place of Presentation
Royal Agricultural College, Cirencester, UK
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[Presentation] Role for specific residues of DnaA AAA+ domain in duplex DNA unwinding during the initiation of chromosomal replication2007
Author(s)
Ozaki, S., Kawakami, H., Nakamura, N., Fujikawa, N., Kagawa, W., Yokoyama, S., Kurumizaka, H., Katayama, T.
Organizer
7th International Meeting on AAA Proteins
Place of Presentation
Royal Agricultural College, Cirencester, UK
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[Presentation] The nucleotide-dependent activation of Hda in the replicase clamp-mediated DnaA-ATP hydrolysis in Escherichia coli, EMBO Workshop2006
Author(s)
Su'etsugu, M., Keyamura, K., Kudo, Y., Nakamura, K., Katayama, T.
Organizer
Cell Cycle and Cytoskeletal Elements in Bacteria
Place of Presentation
Copenhagen, Denmark
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[Presentation] DARS: the chromosomal locus for reactivation of the replication initiator DnaA in E. coli
Author(s)
Fujimitsu, K., Kasho, K., Senriuchi, T., Ohyama, H., Katayama, T.
Organizer
International Symposium on Chromosomal Cycle and Genome Dynamics
Place of Presentation
Nasu, Tochigi, Japan
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