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Selfish genetic elements involved both in the maintenance and rearrangement of the genome

Research Project

Project/Area Number 17310113
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field 基礎ゲノム科学
Research InstitutionThe University of Tokyo

Principal Investigator

KOBAYASHI Ichizo  The University of Tokyo, Graduate School of Frontier Sciences, Professor (30126057)

Co-Investigator(Kenkyū-buntansha) HANADA Naofmi  The University of Tokyo, Graduate School of Frontier Sciences, Assistant Professor (00396855)
Project Period (FY) 2005 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥15,500,000 (Direct Cost: ¥15,500,000)
Fiscal Year 2006: ¥7,500,000 (Direct Cost: ¥7,500,000)
Fiscal Year 2005: ¥8,000,000 (Direct Cost: ¥8,000,000)
Keywordsgenome / selfish gene / restriction enzyme / mobile element / genome evolution / bacterial genome / pathogenic bacteria / phage
Research Abstract

(1) Propagation of restriction-modification systems and their hosts
(1-1) We demonstrated that a thermosensitive mutation in EcoRII modification enzyme enhances maintenance of EcoRII restriction-modification system.
(1-2) We demonstrated that space structure is critical in the evolution of restriction-modification gene complex and other addictive genes.
(1-3) We demonstrated that transcription from promoters in EcoRI restriction-modification gene complex is inhibited by intragenic reverse promoters.
(1-4) We demonstrated suicidal defense of bacteria against invasion of genome methylation systems such as restriction-modification systems.
(2) Restriction-modification systems and genome rearrangements
(2-1) We demonstrated restriction-dependence of IS-mediated transposition of a restriction-modification gene complex.
(2-2) We demonstrated that host attack following loss of a restriction-modification gene complex is counteracted by RecFOR homologous recombination.
(2-3) We demonstrated that Type I … More II restriction occurs after bacteriophage genome replication and that phage-mediated homologous recombination can repair the resulting damages.
(2-4) We elucidated conditions for evolution of gene conversion repairing genome breakage.
(3) Reconstruction of evolutionary processes in the formation of genome polymorphisms through genome comparison.
(3-1) We developed methods and a tool for inference of evolutionary processes through comparison of closely-related genomes.
(3-2) From comparison of Neisseria genomes, we found that a phage genome is integrated into the genome by the phage-carried transposase homologue.
(3-3) We were able to reconstruct formation of apparently complex genome rearrangements by action of mobile elements.
(3-4) We compared multiple genomes of Staphylococcus aureus to understand evolution of their paralogue clusters.
(4) Discovery of restriction enzyme of a novel fold and properties.
From comparison of closely-related genomes, we found a restriction enzyme PabI with novel properties such as Mg-independence. We expressed them in a wheat-germ-based cell-free expression system to solve its crystal structure and found a novel, 'half-pipe' structure. The cognate modification enzyme was also characterized. Less

Report

(3 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • Research Products

    (80 results)

All 2008 2007 2006 2005 Other

All Journal Article (58 results) (of which Peer Reviewed: 1 results) Book (22 results)

  • [Journal Article] Maintenance forced by a restriction-modification system can be modulated by a region in its modification enzyme not essential for the methyltransferase activity2008

    • Author(s)
      Satona Ohno*, Naohumi Handa*, Miki Watanabe, Noriko Takahashi, Ichizo Kobavashi
    • Journal Title

      Journal of Bacteriology 190

      Pages: 2039-2049

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Maintenance forced by a restriction-modification system can be modulated by a region in its modification enzyme. not essential for themethyltransferase activity2008

    • Author(s)
      Satona Ohno*, Naohumi Handa*, Miki Watanabe, Noriko Takahashi, Ichizo Kobavashi.
    • Journal Title

      Journal of Bacteriology 190

      Pages: 2039-2049

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Negative regulation of EcoRI restriction enzyme gene associated with intragenic reverse promoters2007

    • Author(s)
      Yaoping Liu, Ichizo Kobayashi
    • Journal Title

      Journal of Bacteriology 189

      Pages: 6928-6935

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Regulation of the EcoRI restriction-modification system:identification of ecoRIM gene promoters and their upstream negative regulators in the ecoRIR gene2007

    • Author(s)
      Yaoping Liu, Asao Ichige and Ichizo Kobavashi
    • Journal Title

      Gene 400

      Pages: 140-149

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Evolution of DNA double-strand break repair by gene conversion:coevolution between a phage and a estriction-modification system2007

    • Author(s)
      Koji Yahara, Ryota Horie, Jchizo Kobayashi, and Akira Sasaki
    • Journal Title

      Genetics 176

      Pages: 513-526

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] A RecA mutant,RecA730,suppresses the recombination deficiency of the RecBC1004D-Chi*interaction in vitro and anvavo2007

    • Author(s)
      Handa N, Kowalczykowski SC
    • Journal Title

      J Mol Biol 365

      Pages: 1314-25

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Novel protein fold discovered in the PabI family of restriction enzymes2007

    • Author(s)
      Ken-ichi Miyazono, Miki Watanabe, Jan Kosinski, Ken Ishikawa, Masayuki Kamo, Tatsuya Sawasaki, Koji Nagata, Janusz M. Bujnicki, Yaeta Endo, Masaru Tanokura, Ichizo Kobayashi
    • Journal Title

      Nucleic Acids Research 35

      Pages: 1908-1918

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Chromatin as anti-restriction adaptation:a hypothesis based on estriction enzymes of a novel structure2007

    • Author(s)
      Ichizo Kobayashi, Ken Ishikawa, and Miki Watanabe
    • Journal Title

      Proceedings of International Symposium on Extremophiles and Their Applications 205

      Pages: 167-174

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Negative regulation of EcoRl restriction enzyme gene associated with intragenic reverse promoters.2007

    • Author(s)
      Yaoping Liu, Ichizo Kobayashi.
    • Journal Title

      Journal of Bacteriology 189

      Pages: 6928-6935

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Regulation of the EcoRI restriction-modification system : identification ofecoRiM gene promoters and their upstream negative regulatorsin the ecoRIR gene2007

    • Author(s)
      Yaoping Liu, Asao Ichige, oKobaashi.
    • Journal Title

      Gene 400

      Pages: 140-149

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Evolution of DNA double-strand break repair by gene conversion : coevolution between a phage and a restriction-modification system2007

    • Author(s)
      Koji Yahara, Ryota Hone, Ichizo jcyshi, Akira Sasaki
    • Journal Title

      Genetics 176

      Pages: 513-526

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] A RecA mutant, RecA730, suppresses the recombination deficiency of the RecBC1OO4DChi* interaction in vitro and in vivo2007

    • Author(s)
      Handa N, Kowalczykowski SC
    • Journal Title

      J Mol Biol 365

      Pages: 1314-25

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Novel protein fold discovered in the PabI family of restriction enzymes2007

    • Author(s)
      Ken-ichi Miyazono, Miki Watanabe, Jan Kosinski, Ken Ishikawa, Masayuki Kanio, Tatsuya Sawasaki, Koji Nagata, Janusz M. Bujnicki, Yaeta Endo, Masaru Tanokura, Ichizo Kobayashi.
    • Journal Title

      Nucleic Acids Research 35

      Pages: 1908-1918

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Chromatin as anti-restriction adaptation : a hypothesis based on restriction enzymes of a novel structure2007

    • Author(s)
      Ichizo Kobayashi, Ken Ishikawa, Miki Watanabe
    • Journal Title

      Proceedings of International SymposIum on Extremophiles and TheirApplications 205

      Pages: 167-174

    • NAID

      130004598679

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between closely related genomes2007

    • Author(s)
      Ikuo Uchiyama, Toshio Higuchi, Ichizo Kobayashi, CGAT
    • Journal Title

      BMC Bloinformatics 7

      Pages: 472-472

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] A RecA mutant, RecA730, suppresses the recombination deficiency of the RecBC1004D-Chi interaction in vitro and in vivo.2007

    • Author(s)
      Handa N, Kowalczykowski SC
    • Journal Title

      J Mol Biol, 365

      Pages: 1314-25

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Novel protein fold discoverd in the PabI family of restriction enzymes2007

    • Author(s)
      Ken-ichi Miyazono, Miki Watanabe, Jan Kosinski, Ken Ishikawa, Masayuki Kamo, Tatsuya Sawasaki, Koji Nagata, janusz M. Bujnicki, Yaeta Endo, Masaru Tanokura, Ichizo Kobayashi.
    • Journal Title

      Nucleic Acids Research 35

      Pages: 1908-1918

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Chromatin as anti-restriction adaptation : a hypothesis based on restriction enzymes of a novel structure2007

    • Author(s)
      Ichizo Kobayashi, Kwn Ishikawa, Miki Watanabe
    • Journal Title

      Proceedings of International Symposium on Extremophiles and Their Applications 205

      Pages: 167-174

    • NAID

      130004598679

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Hyperthermophilic DNA Methyltransferase M.Pabl(5'GTm6AC)from an Archaeon Pyrococcus abyssi2006

    • Author(s)
      Miki Watanabe, Naofumi Handa, Harumi Yuzawa and Ichizo Kobavashi
    • Journal Title

      Applied and Environmental Microbiology 72

      Pages: 5367-5375

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] CGAT:a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between closely related genomes2006

    • Author(s)
      Ikuo Uchiyama, Toshio Higuchi, Ichizo Kobavashi
    • Journal Title

      BMC Bioinformatics 7

      Pages: 472-472

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] How genomes rearrange:genome comparison within bacteria Neisseria suggests roles for mobile elements in formation of complex genome polymorphisms2006

    • Author(s)
      Mikihiko Kawai, Keiichiro Nakao, Ikuo Uchiyama, Ichizo Kobavashi
    • Journal Title

      Gene 383

      Pages: 52-63

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Hyperthermophilic DNA Methyltransferase M.PabI(5'GTm6AC)from an Archaeon Pyrococcus abyssi2006

    • Author(s)
      Miki Watanabe, Harumi Yuzawa, Naofumi Handa, and Ichizo Kobavashi
    • Journal Title

      Applied and Environmental Microbiology 72

      Pages: 5367-5375

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Evolution of paralogous genes:reconstruction of genom erearrangements through comparison of multiple genomes within Staphylococcus aureus2006

    • Author(s)
      Takeshi Tsuru, Mikihiko Kawai, Yoko Mizutani-Ui, Ikuo Uchiyama, Ichizo Kobayashi
    • Journal Title

      Molecular Biology and Evolution 23

      Pages: 1269-1285

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Genetic addiction:selfish gene's strategy for symbiosis in the genome2006

    • Author(s)
      Atsushi Mochizuki, Koji Yahara, Ichizo Kobayashi, and Yoh Iwasa
    • Journal Title

      Genetics 172

      Pages: 1309-1323

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] The AddAB helicase/nuclease forms a stable complex with its cognate□sequence during translocation2006

    • Author(s)
      Frederic Chedin, Naofumi Handa, Mark S.Dillingham, and Stephen C.Kowalczykowski
    • Journal Title

      Journal of Biological Chemistry 281

      Pages: 18610-18617

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Hyperthermophilic DNA Methyltransferase M.PabI(5'GTm6AC) from an Archaeon Pyrococcus abyssi.2006

    • Author(s)
      Miki Watanabe, Harumi Yuzawa, Naofumi Handa, Lciiizo Kobayasbi
    • Journal Title

      Applied and Environmental Microbiology 72

      Pages: 5367-5375

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] How genomes rearrange : genome comparison within bacteria Neisseria suggests roles for mobile elements in formation of complex genome polymorphisms2006

    • Author(s)
      Mikihiko Kawai, Keiichiro Nakao, Ikuo Uchiyama, Ichizo Kobayashi
    • Journal Title

      Gene 383

      Pages: 52-63

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Hyperthermophilic DNA Methyltransferase M.PabI(5'GTm6AC) from an Archaeon Pyrococeus abyssi.2006

    • Author(s)
      Miki Watanabe, Harumi Yuzawa, Naofiimi Handa, Ichizo Kobayashi
    • Journal Title

      Applied and Environmental Microbiology 72

      Pages: 5367-5375

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Evolution of paralogous genes : reconstruction of genome rearrangements through comparison of multiplegenomes within Staphylococcus aureus2006

    • Author(s)
      Takeshi Tsuru, Mikihiko Kawai, Yoko Mizutani-Ui, Ikuo Uchiyama, Ichizo Kobayashi
    • Journal Title

      Molecular Biology and Evolution 23

      Pages: 1269-1285

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] selfish gene's strategy for symbiosis in the genome2006

    • Author(s)
      Atsushi Mochizuki, Koji Yahara, cho Kobay i, Yoh Iwasa, Genetic addiction
    • Journal Title

      Genetics 172

      Pages: 1309-1323

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Kowalczykowski, TheAddAB helicase/nuclease forms a stable complex with its cognate sequence during translocation2006

    • Author(s)
      Frederic Chedin, Naofumi Handa, Mark S. Dillingham, Stephen C.
    • Journal Title

      Journal of Biological Chemistry 281

      Pages: 18610-18617

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] CGAT : a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between closely related genomes.2006

    • Author(s)
      Ikuo Uchiyama, Toshio Higuchi, Ichizo Kobayashi
    • Journal Title

      BMC Bioinformatics 7

      Pages: 472-472

    • Related Report
      2006 Annual Research Report
  • [Journal Article] How genomes rearrange : genome comparison within bacteria Neisseria suggests roles for mobile elements in formation of complex genome polymorphisms.2006

    • Author(s)
      Mikihiko Kawai, Keiichiro Nakao, Ikuo Uchiyama, Ichizo Kobayashi
    • Journal Title

      Gene 383

      Pages: 52-63

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Hyperthermophilic DNA Methyltransferase M.PabI(5' GTm6AC)from an Archaeon Pyrococcus abyssi.2006

    • Author(s)
      Miki Watanabe, Harumi Yuzawa, Naofumi Handa, Ichizo Kobayashi
    • Journal Title

      Applied and Environmental Microbilogy 72

      Pages: 5367-5375

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Evolutiou of paralogous genes : reconstructon of genome rearrangements through comparison of multiple genomes within Staphylococcus aureus2006

    • Author(s)
      Takeshi Tsuru, Mikihiko Kawai, Yoko Mizutani-Ui, Ikuo Uchiyama, Ichizo Kobayashi
    • Journal Title

      Molecular Biology and Evolution 23

      Pages: 1269-1285

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Genetic addiction : selfish gene's strategy for symbiosis in the genome2006

    • Author(s)
      Atsushi Mochizuki, Kojo Yahara, Ichizo Kobayashi, Yoh Iwasa
    • Journal Title

      Genetics 172

      Pages: 1309-1323

    • Related Report
      2006 Annual Research Report
  • [Journal Article] The AddAB helicase/nuclease forms a stable complex with its cognate sequence during translocation,2006

    • Author(s)
      Frederic Chedin, Naofumi Handa, Mark S. DIllingham, Stephen C. Kowalczykowski
    • Journal Title

      Jounal of Biological Chemistry 281

      Pages: 18610-18617

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Genetic addiction: selfish gene's strategy for symbiosis in the genome2006

    • Author(s)
      Atsushi Mochizuki, Koji Yahara, Ichizo Kobayashi, Yoh Iwasa
    • Journal Title

      Genetics 172

      Pages: 1309-1323

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Genome comparison in silico in Neisseria suggests integration of filamentous bacteriophage by its own transposase2005

    • Author(s)
      Mikihiko Kawai, Ikuo Uchiyama, Ichizo Kobavashi
    • Journal Title

      DNA Research 12

      Pages: 389-401

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] A trial of somatic gene targeting in vivo with an adenovirus vector2005

    • Author(s)
      AsamiIno, Yasuhiro Naito, Hiroyuki Mizuguchi, Naofumi Handa, Takao Hayakawa, and Ichizo Kobavashi
    • Journal Title

      Genetic Vaccines and Therapy 3

      Pages: 8-8

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Type III restriction is alleviated by bacteriophage (RecE)homologous recombination function but enhanced by bacterial(RecBCD)function2005

    • Author(s)
      Naofumi Handa, Ichizo Kobayashi
    • Journal Title

      Journal of Bacteriology 187

      Pages: 7362-7373

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Stability of EcoRI Restriction-Modification Enzymes In Vivo Differentiates the EcoRI Restriction-Modification System from Other Postsegregational Cell Killing Systems2005

    • Author(s)
      Asao Ichige, Ichizo Kobavashi
    • Journal Title

      Journal of Bacteriology 187

      Pages: 6612-6621

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Discovery of a novel restriction endonuclease by genome comparison and application of a wheat-germ-based cell-free translation assay:Pabl(5'GTA/C)from the hyperthermophilic archaeon Pyrococcus abyssi2005

    • Author(s)
      Ken Ishikawa, Miki Watanabe, Toshihiro Kuroita, Ikuo Uchiyama, Janusz M.Bujnicki, BunseiKawakami, Masaru Tanokura and Ichizo Kobavashi
    • Journal Title

      Nucleic Acids Research 33

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] ゲノムを維持する組換え酵素の一分子生化学2005

    • Author(s)
      半田 直史
    • Journal Title

      蛋白核酸酵素 50:11

      Pages: 1429-1435

    • NAID

      40006927839

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Genome comparison in silico in Neisseria suggests integration of filamentous bacteriophage by its own transposase.2005

    • Author(s)
      Mikihiko Kawai, flcuo Uchiyama, Ichizo Kobayashi
    • Journal Title

      DNA Research 12

      Pages: 389-401

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Naofumi Handa. Takao Hayakawa, and Ichizo Kobayashi., A trial of somatic gene targeting in vivo with an adenovirus vector.2005

    • Author(s)
      Asami mo, Yasuhiro Naito, Hiroyuki Mizuguchi
    • Journal Title

      Genetic Vaccines and Therapy 3

      Pages: 8-8

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Type III restriction is alleviated by bacteriophage(RecE) homologous recombination function but enhanced by bacterial(RecBCD) function2005

    • Author(s)
      Naofumi Handa, Ichizo Kobayashi.
    • Journal Title

      Journal of Bacteriology 187

      Pages: 7362-7373

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Stability of EcoRI Restriction-Modification Enzymes In Vivo Differentiates theEcoRl Restriction-Modification System from Other Postsegregational Cell Killing Systems2005

    • Author(s)
      Asao Ichige, Ichizo Kobayj.
    • Journal Title

      Journal of Bacteriology 187

      Pages: 6612-6621

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Discovery of a novel restriction endonuclease by genome comparison and application of a wheat-germ-based cell-freetranslation assay : PabI(5'GTAJC) from the hyperthermophilic archaeon Fyrococcus abyssi.2005

    • Author(s)
      Ken Ishikawa, Miki Watanabe, Toshihiro Kuroita, llcuo Uchiyama, Janusz M. Bujnicki, Bunsei Kawakami, Masaru Tanokura, Masaru Tanokura and Ichizo Kobyashi
    • Journal Title

      Nucleic Acids Research 33

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Single Molecule Study of a Recombinase2005

    • Author(s)
      Naofumi Handa
    • Journal Title

      Protein, Nucleic Acid and Enzyme 50 : 11

      Pages: 1429-1435

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] A trial of somatic gene targeting in vivo with an adenovirus vector2005

    • Author(s)
      Asami Ino, Yasuhiro Naito, Hiroyuki Mizuguchi, Naofumi Handa, Takao Hayakawa, Ichizo Kobayashi
    • Journal Title

      Genetic Vaccines and Therapy 3

      Pages: 8-8

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Type III restriction is alleviated by bacteriophage (RecE) homologous recombination function but enhanced by bacterial (RecBCD) function.2005

    • Author(s)
      Naofumi Handa, Ichizo Kobayashi
    • Journal Title

      Journal of Bacteriology 187

      Pages: 7362-7373

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Stability of EcoRI Restriction-Modification Enzymes In Vivo Differentiates the EcoRI Restriction- Modification System from Other Postsegregational Cell Killing Systems2005

    • Author(s)
      Asao Ichige, Ichizo Kobayashi
    • Journal Title

      Journal of Bacteriology 187

      Pages: 6612-6621

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Discovery of a novel restriction endonuclease by genome comparison and application of a wheat-germ-based cell-free translation assay: PablI(5'GTA/C) from the hyperthermophilic archaeon Pyrococcus abyssi.2005

    • Author(s)
      Ken Ishikawa, Miki Watanabe, Toshihiro Kuroita, Ikuo Uchiyama, Janusz M.Bujnicki, Bunsei Kawakami, Masaru Tanokura, Ichizo Kobayashi
    • Journal Title

      Nucleic Acids Research 33

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Direct Visualization of RecBCD Movement Reveals Cotranslocation of the RecD Motor after chi Recognition.2005

    • Author(s)
      Handa N, Bianco PR, Baskin RJ, Kowalczykowski Sc
    • Journal Title

      Mol Cell. 17

      Pages: 45-750

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Evolution of DNA double-stand break repair by gene conversion : coevolution between a phage and a restriction-modification system

    • Author(s)
      Koji Yahara, Ryota Hoeie, Ichizo Kobayashi, Akira Sasaki.
    • Journal Title

      Genetics (印刷中)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Random-walkers active in genetic recombination.

    • Author(s)
      Y.Fujitani, I.Kobayashi
    • Journal Title

      Biology International (刊行中)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Genome comparison in silico in Neisseria suggests integration of filamentous bacteriophage by its own transposase.

    • Author(s)
      Mikihiko Kawai, Ikuo Uchiyama, Ichizo Kobayashi
    • Journal Title

      DNA Research (刊行中)

    • Related Report
      2005 Annual Research Report
  • [Book] 生物の科学遺伝別冊No.21日本の遺伝学の潮流「近縁ゲノム比較によるゲノム再編進化過程の解析」2007

    • Author(s)
      河合 幹彦, 小林 一三
    • Total Pages
      340
    • Publisher
      エヌ・ティー・エス
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Book] 生化学辞典第4版2007

    • Author(s)
      小林 一三, 半田 直史
    • Total Pages
      1616
    • Publisher
      東京化学同人
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Book] Analysis of evolutionary genome rearrangements through comparison of closely-related genomes2007

    • Author(s)
      Mikihiko Kawai, Ichizo Kobayj
    • Total Pages
      340
    • Publisher
      NTS
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Book] Biochemical Dictionary, 4th Edition2007

    • Author(s)
      Ichizo Kobayashi, Naofumi Handa
    • Total Pages
      1616
    • Publisher
      Tokyo Kagaku Dojin
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Book] 生物の科学遺伝別冊No.21日本の遺伝学の潮流「近縁ゲノム比較によるゲノム再編進化過程の解析」2007

    • Author(s)
      河合幹彦, 小林一三
    • Total Pages
      340
    • Publisher
      エヌ・ティー・エス
    • Related Report
      2006 Annual Research Report
  • [Book] 有害遺伝子なしでは生き残れなくなったゲノム「進化, 情報, かたち-生命知のパースペクティブ」2006

    • Author(s)
      矢原 耕史, 小林 一三
    • Total Pages
      188
    • Publisher
      培風館
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Book] ゲノムはなぜ変わるのか:原核生物を中心に-シリーズ「進化学」第2巻「遺伝子とゲノムの進化」2006

    • Author(s)
      小林 一三
    • Total Pages
      220
    • Publisher
      岩波書店
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Book] 「RecBCD酵素の精製法」タンパク質実験マニュアル(胡桃坂編)2006

    • Author(s)
      半田 直史
    • Total Pages
      168
    • Publisher
      朝倉書店
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Book] Genome addiction to genes Evolution, Information and Shape : a Perspecive of Insights into Life2006

    • Author(s)
      Koji Yahara, I. Kobayashi
    • Total Pages
      188
    • Publisher
      Baifukan, Tokyo
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Book] How genomes change : a perspetive with emphasis on the prokaryotes.in Evolutionary Biology, volume 2 Evolution of genes and genomes2006

    • Author(s)
      I. Kobayashi
    • Total Pages
      279
    • Publisher
      Iwanami Shoten(Tokyo)
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Book] Purification of RecBCD enzyme in Escherichia coli in Manual for Protein Experiments ed.by Kurumizaka2006

    • Author(s)
      Naofumi Handa
    • Total Pages
      168
    • Publisher
      Asakura Shoten(Tokyo)
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Book] 有害遺伝子なしでは生き残れなくなったゲノム「進化、情報、---生命知のパースペクティブ」2006

    • Author(s)
      矢原耕史, 小林一三
    • Total Pages
      188
    • Publisher
      培風館
    • Related Report
      2006 Annual Research Report
  • [Book] ゲノムはなぜ変わるのか : 原核生物を中心に-シリーズ「進化学」 第2巻 「遺伝子とゲノムの進化」2006

    • Author(s)
      小林一三
    • Total Pages
      220
    • Publisher
      岩波書店
    • Related Report
      2006 Annual Research Report
  • [Book] 「RecBCD酵素の精製法」 タンパク質実験マニュアル(胡桃坂編)2006

    • Author(s)
      半田直史
    • Total Pages
      168
    • Publisher
      朝倉書店
    • Related Report
      2006 Annual Research Report
  • [Book] Programmed Cell Death in Microorganisms.In Survival and Death in Bacteria.M.Yamada, Ed2005

    • Author(s)
      S.Gautam, A.Sharma, I.Kobavashi
    • Total Pages
      246
    • Publisher
      Research Signpost,Kerala
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Book] バクテリオファージ・ラムダ。石川統, 黒岩常祥, 永田和宏(編), 細胞生物学事典2005

    • Author(s)
      広瀬 彩, 小林 一三
    • Total Pages
      464
    • Publisher
      朝倉書店
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Book] Programmed Cell Death in Microorganisms. In Survival and Death in Bacteria. M. Yamada, Ed2005

    • Author(s)
      S. Gautam, A. Sharma, I. Kobayashi.
    • Total Pages
      246
    • Publisher
      Research Signpost(Kerala)
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Book] Bacteriophage lambda. Tn Encyclopedia of Cell Biology2005

    • Author(s)
      Ichizo Kobavashi, Aya Hirose
    • Total Pages
      246
    • Publisher
      Asakura Shoten(Tokyo)
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Book] Programmed Cell Death in Microorganisms In Survival and Death in Bacteria2005

    • Author(s)
      S.Gautam, A.Sharma, I.Kobayashi
    • Total Pages
      246
    • Publisher
      Research Signpost, Kerala
    • Related Report
      2005 Annual Research Report
  • [Book] ラムダファージ。細胞生物学事典2005

    • Author(s)
      小林一三, 広瀬綾
    • Total Pages
      464
    • Publisher
      朝倉書店
    • Related Report
      2005 Annual Research Report
  • [Book] 有害遺伝子なしでは生き残れなくなったゲノム「進化、情報、かたち---生命知のパースペクティブ」

    • Author(s)
      矢原耕史, 小林一三
    • Publisher
      培風館(刊行中)
    • Related Report
      2005 Annual Research Report
  • [Book] ゲノムはなぜ変わるのか:原核生物を中心に-シリーズ「進化学」第2巻「遺伝子とゲノムの進化」

    • Author(s)
      小林一三
    • Publisher
      岩波書店(刊行中)
    • Related Report
      2005 Annual Research Report

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Published: 2005-04-01   Modified: 2016-04-21  

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