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Functional study of tRNA mimicry proteins in regulation of protein synthesis

Research Project

Project/Area Number 17310123
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Living organism molecular science
Research InstitutionThe University of Tokyo

Principal Investigator

ITO Koichi  The University of Tokyo, Institute of Medical Science, Associate Professor (10262073)

Project Period (FY) 2005 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥17,430,000 (Direct Cost: ¥15,600,000、Indirect Cost: ¥1,830,000)
Fiscal Year 2007: ¥7,930,000 (Direct Cost: ¥6,100,000、Indirect Cost: ¥1,830,000)
Fiscal Year 2006: ¥3,800,000 (Direct Cost: ¥3,800,000)
Fiscal Year 2005: ¥5,700,000 (Direct Cost: ¥5,700,000)
KeywordsTranslation termination / Translational Control / Ribosome / Recoding / Polypeptide-chain release factor / Protein Synthesis / tRNA mimicry / Regulation of gene expression / 蛋白質合成
Research Abstract

Translation termination in eukaryotes is mediated by two eukaryotic release factors, eRF1 and eRF3. eRF1 recognizes all three stop codons and induces polypeptide release, while eRF3 binds to eRF1 and participates in translation termination though the regulatory role of eRF3 is still unknown. Importantly, eRF3 interacts with various proteins of distinct biological functions. Here, we investigated the effect of these binding factors on functionality and stability of eRF3 using a temperature-sensitive mutant eRF3ts, which is susceptible to factor binding to change the growth phenotype or cellular protein level. Of factors tested, Itt1 over-expression and Sla1 knockout severely impaired viability of eRF3ts cell and its protein abundance in permissive and semipermissive conditions. Slat over-expression reversed the phenotype. It is reported that Itt1 and Sla1 bind to the N-terminal extension domain (NED) of eRF3, unlike the other no-effect factors that bind to the C-terminal domain (CTD). Although NED itself is dispensable, NED-less eRF3ts altered in the stability and functionality. Moreover, Itt1-induced eRF3ts lethality was significantly restored by pep4, prb1 and prc1 knockouts that are defective in vacuolar proteolysis. These findings suggest that NED functions to switch the functional mode of eRF3 depending on the nature of binding factors.

Report

(4 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • 2005 Annual Research Report
  • Research Products

    (40 results)

All 2008 2007 2006 2005 Other

All Journal Article (17 results) (of which Peer Reviewed: 8 results) Presentation (21 results) Book (2 results)

  • [Journal Article] Ciliates use both variant and universal genetic codes: An evidence of omnipotent eRFIs in the class Litostomatea2008

    • Author(s)
      Oanh Thi Phuong Kim
    • Journal Title

      GENE (掲載確定)

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Reduced action of polypeptide release factors induces mRNA cleavage and tmRNA tagging at stop codons in Escherichia coli.2007

    • Author(s)
      Li, X.
    • Journal Title

      Molecular Microbiology 63

      Pages: 116-126

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Chloroplast ribosome release factor 1(AtcpRF1)is essential for chloroplast development.2007

    • Author(s)
      Motohashi, R
    • Journal Title

      Plant Molecular Biology 64

      Pages: 481-497

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] The role of N-terminal domain of translational release factor eRF3 for the control of functionality and stability in S. cerevisiae.2007

    • Author(s)
      Kodama, H
    • Journal Title

      Genes to Cells 5

      Pages: 639-650

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Reduced action of polypeptide release factors induces mRNA cleavage and tmRNA tagging at stop codons in Escherichia coli2007

    • Author(s)
      Li, X., Yokota, T., Ito, K., Nakamura, Y., Aiba, H.
    • Journal Title

      Mol Microbiol. 63

      Pages: 116-126

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Chloroplast ribosome release factor 1 (AtcpRF1) is essential for chloroplast development2007

    • Author(s)
      Motohashi, R., Yamazaki, T., Myouga, F., Ito, T., Ito, K., Satou, M., Kobayashi, M., Nagata, N., Yoshida, S., Nagashima, A., Tanaka, K., Takahashi, S., Shinozaki, K.
    • Journal Title

      Plant Mol Biol. 64

      Pages: 481-497

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] The role of N-terminal domain of translational release factor eRF3 for the control of functionality and stability in S. cerevisiae2007

    • Author(s)
      Kodama, H., Ito, K., Nakamura, Y.
    • Journal Title

      Genes Cells. 5

      Pages: 639-650

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Chloroplast ribosome release factor 1 (AtcpRF1) is essential for chloroplast development2007

    • Author(s)
      Motohashi, R
    • Journal Title

      Plant Molecular Biology 64

      Pages: 481-497

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The role of N-terminal domain of translational release factor eRF3 for the control of functionality and stability in S. cerevisiae2007

    • Author(s)
      Kodama, H
    • Journal Title

      Genes to Cells 5

      Pages: 639-650

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Reduced action of polypeptide release factors induces mRNA cleavage and tmRNA tagging at stop codons in Escherichia coli.2007

    • Author(s)
      Li, X
    • Journal Title

      Molecular Microbiology 60

      Pages: 116-126

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Chloroplast ribosome release factor 1 (AtcpRF1) is essential for chloroplast development.2007

    • Author(s)
      Motohashi, R
    • Journal Title

      Plant Molecular Biology In Press

    • Related Report
      2006 Annual Research Report
  • [Journal Article] The role of N-terminal domain of translational release factor eRF3 for the control of functionality and stability in S. cerevisiae.2007

    • Author(s)
      Kodama, H
    • Journal Title

      Gene to Cells In Press

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Ribosomal protein L11 mutations in two functional domains equally affect release factors 1 and 2 activity.2006

    • Author(s)
      Sato, H
    • Journal Title

      Molecular Microbiology 60

      Pages: 108-120

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Ribosomal protein L11 mutations in two functional domains equally affect release factors 1 and 2 activity2006

    • Author(s)
      Sato, H., Ito, K., Yakamura, Y.
    • Journal Title

      Mol Microbiol. 60

      Pages: 108-120

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Ribosomal protein L11 mutations in two functional domains equally affect release factors 1 and 2 activity2006

    • Author(s)
      Sato H.
    • Journal Title

      Molecular Microbiology 60

      Pages: 108-120

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Ciliates use both variant and universal genetic codes: An evidence of omnipotent eRFls in the class Litostomatea.

    • Author(s)
      Thi Phuong Kim
    • Journal Title

      Gene 印刷中

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Ciliates use both variant and universal genetic codes : An evidence of omnipotent eRF1s in the class Litostomatea

    • Author(s)
      Thi Phuong Kim, O., Sakurai, A., Saito, K., Ito, K., Ikehara, K., Harumoto, T.
    • Journal Title

      Gene (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 多様なmRNA動態機能発現を可能にする終止コドン認識機2007

    • Author(s)
      伊藤耕一
    • Organizer
      日本プロテオーム機構(JHUPO)第5回大会
    • Place of Presentation
      東京
    • Year and Date
      2007-07-31
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary
  • [Presentation] 繊毛虫eRF1のコドン特異性取得の再検証と真核生物の終止コドン認識機構解明への応用2007

    • Author(s)
      斎藤和紀
    • Organizer
      第30回日本分子生物学会年会(BMB200)
    • Place of Presentation
      横浜
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] ドロップオフ反応を用いた翻訳終結因子RF3の機能構造領域解明2007

    • Author(s)
      渡辺裕也
    • Organizer
      第30回日本分子生物学会年会(BMB200)
    • Place of Presentation
      横浜
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 出芽酵母翻訳終結因子eRF3のN末端領域を介したeRF3分解制御機構2007

    • Author(s)
      和田美紀
    • Organizer
      第30回日本分子生物学会年会(BMB200)
    • Place of Presentation
      横浜
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 翻訳終結因子の新規な機能性とその機能構造2006

    • Author(s)
      小玉裕之
    • Organizer
      第6回日本蛋白質科学会年会
    • Place of Presentation
      京都
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Identification of RF3 domain for peptidyl-tRNA drop-off.2006

    • Author(s)
      Watanabe Y
    • Organizer
      20th IUBMB International Congress of Biochemistry and Molecular Biology
    • Place of Presentation
      Kyoto Japan
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Genetic analyses of species-specific interaction among surveillance complex components for nonsense-mediated mRAN decay2006

    • Author(s)
      Wada M
    • Organizer
      20th IUBMB International Congress of Biochemistry and Molecular Biology
    • Place of Presentation
      Kyoto Japan
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] A genetic analysis of stop codon recognition mechanism of class I eukaryotic release factor. eRF1.2006

    • Author(s)
      Saito K
    • Organizer
      20th IUBMB International Congress of Biochemistry and Molecular Bioloay
    • Place of Presentation
      Kyoto Japan
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Novel mechanism to regulate the polypeptide chain release factor 3 (eRF3) activity through its cis-acting N-terminal Domain in Saccharomyces2006

    • Author(s)
      Kodama H
    • Organizer
      20th IUBMB International Congress of Biochemistry and Molecular Biology
    • Place of Presentation
      Kyoto Japan
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Identification of RF3 domain for peptidyl-tRNA drop-off2006

    • Author(s)
      Watanabe Y., Ito K., Nakamura Y.
    • Organizer
      20th IUBMB International Congress of Biochemistry and Molecular Biology
    • Place of Presentation
      Kyoto Japan
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Genetic analyses of species-specific interaction among surveillance complex components for nonsense-mediated mRNA decay2006

    • Author(s)
      Wada M., Murakami S., Nakamura Y., Ito K.
    • Organizer
      20th IUBMB International Congress of Biochemistry and Molecular Biology
    • Place of Presentation
      Kyoto Japan
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] A genetic analysis of stop codon recognition mechanism of class I eukaryotic release factor, eRF12006

    • Author(s)
      Saito K., Nakamura Y, Ito K.
    • Organizer
      20th IUBMB International Congress of Biochemistry and Molecular Biology
    • Place of Presentation
      Kyoto Japan
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Novel mechanism to regulate the polypeptide chain release factor 3 (eRF3) activity through its cis-acting N-terminal Domain in Saccharomyces cerevisiae2006

    • Author(s)
      Kodama H., Nakamura Y., Ito K.
    • Organizer
      20th IUBMB International Congress of Biochemistry and Molecular Biology
    • Place of Presentation
      Kyoto Japan
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] ペプチジルtRNAのドロップオフ促進作用に関わる翻訳終結因子RF3の機能ドメイン解明2005

    • Author(s)
      渡辺裕也
    • Organizer
      第28回日本分子生物学会年会
    • Place of Presentation
      福岡
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] リボソーム蛋白質L11による翻訳終結制御機構の解明2005

    • Author(s)
      佐藤華江
    • Organizer
      第28回日本分子生物学会年会
    • Place of Presentation
      福岡
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 出芽酵母GTP結合性ペプチド鎖解離因子eRF3におけるN末端シス領域を介した新規な機能制御機構2005

    • Author(s)
      小玉裕之
    • Organizer
      第28回日本分子生物学会年会
    • Place of Presentation
      福岡
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 出芽酵母NMD評価系を用いた異種由来Upf因子群の機能的相補性2005

    • Author(s)
      村上紗織
    • Organizer
      第28回日本分子生物学会年会
    • Place of Presentation
      福岡
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 翻訳終結因子eRF3の終結反応とmRNA品質管理機構における機能的関連性の検証2005

    • Author(s)
      和田美紀
    • Organizer
      第28回日本分子生物学会年会
    • Place of Presentation
      福岡
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] tRNA擬態が可能にした蛋白質合成装置の基本機能と拡張性2005

    • Author(s)
      伊藤耕一
    • Organizer
      第5回日本蛋白質科学会年会・シンポジウム
    • Place of Presentation
      福岡
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Isolation and functional analyses of ribosomal protein mutations that affect translation termination efficiency2005

    • Author(s)
      Hanae Sato
    • Organizer
      EMBO Conference on Protein Synthesis and Translational Control Partnered with the CSHL Meeting on Translational Control
    • Place of Presentation
      Heidelberg
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Isolation and functional analyses of ribosomal protein mutations that affect translation termination efficiency2005

    • Author(s)
      Hanae Sato, Koichi Ito, Yoshikazu Nakamura
    • Organizer
      EMBO Conference on Protein Synthesis and Translational Control Partnered with the CSHL Meeting on Translational Control
    • Place of Presentation
      EMBL Heidelberg
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] 翻訳調節における翻訳終結制御機構の新知見(実験医学)2007

    • Author(s)
      伊藤耕一
    • Total Pages
      6
    • Publisher
      羊土社
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] ナンセンス!(蛋白質核酸酵素)2006

    • Author(s)
      伊藤耕一
    • Total Pages
      2
    • Publisher
      共立出版
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary

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Published: 2005-04-01   Modified: 2016-04-21  

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