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Combinatorial Biosynthesis of Plant Polyketides and Polyprenoids

Research Project

Project/Area Number 17310130
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Living organism molecular science
Research InstitutionUniversity of Shizuoka

Principal Investigator

NOGUCHI Hiroshi  University of Shizuoka, School of Pharmaceutical Sciences, Dept of Pharmacognosy, Professor, 薬学部, 教授 (60126141)

Co-Investigator(Kenkyū-buntansha) ABE Ikuro  Univ.of Shizuoka, School of Pharmaceutical Sciences, Department of Pharmacognosy, Lecturer, 薬学部, 講師 (40305496)
UMEHARA Kaoru  Univ.of Shizuoka, School of Pharm.Sci., Dept of Pharmacognosy, Research Associate, 薬学部, 助教 (40185070)
Project Period (FY) 2005 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥15,800,000 (Direct Cost: ¥15,800,000)
Fiscal Year 2006: ¥6,100,000 (Direct Cost: ¥6,100,000)
Fiscal Year 2005: ¥9,700,000 (Direct Cost: ¥9,700,000)
Keywordschalcone / Hopene synthase / plant polyketide synthase / squalene / flavonoid / aloe / triterpene / squalene : hopene cyclase
Research Abstract

(1)The chalcone synthase (CHS) superfamily of type III polyketide synthases (PKSs) produces a variety of plant secondary metabolites with remarkable structural diversity and biological activities (e.g., chalcones, stilbenes, benzophenones, acrydones, phloroglucinols, resorcinols, pyrones, and chromones). An octaketide-producing novel plant-specific type III PKS from aloe (Aloe arborescens) shares 50-60% amino acid sequence identity with other plant CHS-superfamily enzymes. A recombinant enzyme expressed in Escherichia coli catalyzed seven successive decarboxylative condensations of malonyl-CoA to yield aromatic octaketides SEK4 and SEK4b, the longest polyketides known to be synthesized by the structurally simple type III PKS. Surprisingly, site-directed mutagenesis revealed that a single residue Gly207 (corresponding to the CHS's active site Thr197) determines the polyketide chain length and product specificity. Small-to-large substitutions (G207A,G207T,G207M,G207L,G207F, and G207W) re … More sulted in loss of the octaketide-forming activity and concomitant formation of shorter chain length polyketides (from triketide to heptaketide) including a pentaketide chromone, 2,7-dihydroxy-5-methylchromone, and a hexaketide pyrone, 6-(2,4-dihydroxy-6-methylphenyl)-4-hydroxy-2-pyrone, depending on the size of the side chain. Notably, the functional diversity of the type III PKS was shown to evolve from simple steric modulation of the chemically inert single residue lining the active-site cavity accompanied by conservation of the Cys-His-Asn catalytic triad. This provided novel strategies for the engineered biosynthesis of pharmaceutically important plant polyketides. Pentaketide chromone synthase (PCS) from Aloe arborescens is a novel plant-specific type III polyketide synthase (PKS) that produces 5,7-dihydroxy-2-methylchromone from five molecules of malonyl-CoA. On the basis of the crystal structures of wild-type and M207G mutant PCS, the F80A/Y82A/M207G triple mutant was constructed and shown to produce an unnatural novel nonaketide naphthopyrone by sequential condensations of nine molecules of malonyl-CoA. This is the first demonstration of the formation of a nonaketide by the structurally simple type III PKS. A homology model predicted that the active-site cavity volume of the triple mutant is increased to 4 times that of the wild-type PCS.
(2)Two indole-containing substrate analogs in which a C20 isoprene unit is connected to indole ; 3-(geranylgeranyl)indole and 3-(farnesyl-dimethyIallyl)indole, were synthesized and tested for enzymatic cyclization by squalene : hopene cyclase from Alicyclobacillus acidocaldarius. Interestingly, 3-(Geranylgeranyl)indole was not a substrate for the bacterial squalene cyclase, while 3-(farnesyl-dimethylallyl)indole was efficiently converted to a 2:1 mixture of an unnatural novel tetracycic and pentacyclic product. Less

Report

(3 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • Research Products

    (32 results)

All 2007 2006 2005 2004

All Journal Article (32 results)

  • [Journal Article] Enzymatic formation of unnatural cytokinin analogs by adenylate-isopentenyl-transferase from mulberry2007

    • Author(s)
      I.Abe, H.Tanaka, T.Abe, H.Noguchi
    • Journal Title

      Biochem. and Biophys. Res. Commun. 355

      Pages: 795-800

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] An acridone-producing novel multifunctional type III polyketide synthase from Huperzia serrata.2007

    • Author(s)
      K.Wanibuchi, P.Zhang, T.Abe, H.Morita, T.Kohno, G.Chen, H.Noguchi, I.Abe
    • Journal Title

      FEBS Journal. 274

      Pages: 1073-1082

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Site-directed mutagenesis of conserved aromatic residuesin rat squalene epoxidase2007

    • Author(s)
      I.Abe, T.Abe, W.Lou, T.Masuoka, H.Noguchi
    • Journal Title

      Biochem. and Biophys. Res. Commun. 352

      Pages: 259-263

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Site-directed mutagenesis of conserved aromatic residuesin rat squalene epoxidase2007

    • Author(s)
      I.Abe, T.Abe, W.Lou, T.Masuoka, H.Noguchi
    • Journal Title

      Biochem.and Biophys.Res.Commun. 352

      Pages: 259-263

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Enzymatic formation of unnatural cytokinin analogs by adenylate-isopentenyl-transferase from mulberry2007

    • Author(s)
      I.Abe, H.Tanaka, T.Abe, H.Noguchi
    • Journal Title

      Biochem.and Biophys. Res. Commun 355

      Pages: 795-800

    • Related Report
      2006 Annual Research Report
  • [Journal Article] An acridon-producing novel multifunctional type III polyketide synthase from Huperzia serrata.2007

    • Author(s)
      K.Wanibuchi, P.Zhang, T.Abe, H.Morita, T.Kohno, G.Chen, H.Noguchi, I.Abe
    • Journal Title

      FEBS Journal. 274

      Pages: 1073-82

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Site-directed mutagenesis of conserved aromatic residuesin rat squalene epoxidase2007

    • Author(s)
      I.Abe, T.Abe, W.Lou, T.Masuoka, H.Noguchi
    • Journal Title

      Biochem.and Biophys. Res. Commun 352

      Pages: 259-263

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Enzymatic Formation of Quinolone Alkaloids by a Plant Type III Polyketide Synthase2006

    • Author(s)
      I.Abe, T.Abe, K.Wanibuchi, H.Noguchi
    • Journal Title

      Tetrahedron Letter. 47

      Pages: 8727-8730

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Crystallization and preliminary crystallographic analysis of a novel plant type III polyketide synthase that produces pentaketide chromone2006

    • Author(s)
      H.Morita, S.Kondo, T.Abe, H.Noguchi, S.Sugio I.Abe, T.Kohno
    • Journal Title

      Acta Crystallographica Section F 62

      Pages: 899-901

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Engineered Biosynthesis of Plant Polyketides : Manipulation of Chalcone Synthase2006

    • Author(s)
      I.Abe, T.Watanabe, H.Morita, T.Kohno, H.Noguchi
    • Journal Title

      Organic. Letter 8

      Pages: 499-502

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] Active site residues governing substrate selectivity and polyketide chain length in aloesone synthase2006

    • Author(s)
      I.Abe, T.Watanabe, W.Lou, H.Noguchi
    • Journal Title

      FEBS Journal 273

      Pages: 208-218

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary 2005 Annual Research Report
  • [Journal Article] Enzymatic Formation of Quinolone Alkaloids by Plant Type III Polyketide Synthase2006

    • Author(s)
      I.Abe, T.Abe, K.Wanibuchi, H.Noguchi
    • Journal Title

      Org.Lett. 8(26)

      Pages: 6063-6065

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Enzymatic formation of an unnatural methylated triketide by plant type III polyketide synthases2006

    • Author(s)
      T.Abe, H.Noma, H.Noguchi, I.Abe
    • Journal Title

      Tetrahedron Lett. 47

      Pages: 8727-8730

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Crystallization and preliminary crystallographic analysis of a novel plant type III polyketide synthase that produces pentaketide chromone2006

    • Author(s)
      H.Morita, S.Kondo, T.Abe, H.Noguchi, S.Sugio L.Abe, T.Kohno
    • Journal Title

      Acta Crystallographica Section F COMMUN. 62

      Pages: 899-901

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Enzymatic formation of pyrrole-containing novel cyclic polyprenoids by bacterial squalene : hopene cyclase2006

    • Author(s)
      H.Tanaka H.Noma H.Noguchi, I.Abe
    • Journal Title

      Tetrahedron Lett. 47

      Pages: 3085-3089

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Engineered Biosynthesis of Plant Polyketides : Manipulation of Chalcone Synthase2006

    • Author(s)
      T.Abe, T.Watanabe, H.Morita, T.Kohno, H.Noguchi
    • Journal Title

      Org.Lett. 8(3)

      Pages: 499-502

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Enzymatic Formation of Quinolone Alkaloids by a Plant III Polyketide Synthase2006

    • Author(s)
      I.Abe, T.Abe, K.Wanibuchi, H.Noguchi
    • Journal Title

      Tetrahedron Letter. 47

      Pages: 8727-8730

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Crystallization and preliminary crystallographic analysis of a novel plant type III polyketide synthase that produces pentaketide chromone2006

    • Author(s)
      H.Morita, S.Kondo, T.Abe, H.Noguchi, S.Sugio, I.Abe, T.Kohno
    • Journal Title

      Acta Crystallographica Section F 62

      Pages: 899-901

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Engineered Biosynthesis of Plant Polyketides : Manipulation of Chalcone Synthase2006

    • Author(s)
      I.Abe, T.Watanabe, H.Morita, T.Kohno, H.Noguchi
    • Journal Title

      Org.Lett., 8(3)

      Pages: 499-502

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Chalcone Synthase Superfmaily of Type III Polyketide Synthases from Rhubarb (Rheum palmatum)2005

    • Author(s)
      H.Tanaka, H.Noguchi, I.Abe
    • Journal Title

      Proc. Japan Acad. 81

      Pages: 434-440

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Engineered Biosynthesis of Plant Polyketides : Chain Length Control in an Octaketide-Producing Plant Type III Polyketide Synthase2005

    • Author(s)
      I.Abe, S.Oguro, Y.Utsumi, Y.Sano, H.Noguchi
    • Journal Title

      J. Am. Chem. Soc. 127(36)

      Pages: 12709-12716

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Japanese morning glory dusky mutants displaying reddish-brown or purplish-gray flowers are deficient in a novel glycosylation enzyme for anthocyanin biosynthesis, UDP-glucose : anthocyanidin 3-O-glucoside-2"-O- glucosyltransferase, due to 4-bp insertions in the gene2005

    • Author(s)
      Y.Morita, A.Hoshino, Y.Kikuchi, H.Okuhara, E.Ono, Y.Tanaka, Y.Fukui, N.Saito, E.Nitasaka, H.Noguchi, S.Iida
    • Journal Title

      The Plant Journal 42

      Pages: 353-363

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] A Plant Type III Polyketide Synthase that Produces Pentaketide Chromone2005

    • Author(s)
      I.Abe, Y.Utsumi, S.Oguro, H.Morita, Y.Sano, H.Noguchi
    • Journal Title

      J. Am. Chem. Soc. 127(5)

      Pages: 1362-1363

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Chalcone Synthase Superfmaily of Type III Polyketide Synthases from Rhubarb (Rheum palmatum)2005

    • Author(s)
      I.Abe, T.Watanabe, H.Noguchi
    • Journal Title

      Proc.Japan Acad. 81, Ser. B

      Pages: 434-440

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Enzymatic Formation of Indole-Containing Unnatural Cyclic Polyprenoids by Bacterial Squalene : Hopene Cyclase2005

    • Author(s)
      H.Tanaka, H.Noguchi, I.Abe
    • Journal Title

      Organic.Lett. 7(26)

      Pages: 5873-5876

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Engineered Biosynthesis of Plant Polyketides : Chain Length Control in an Octaketide-Producing Plant Type III Polyketide Synthase2005

    • Author(s)
      I.Abe, S.Oguro, Y.Utsumi, Y.Sano, H.Noguchi
    • Journal Title

      J.Am.Chem.Soc. 127 (36)

      Pages: 12709-12716

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] A Plant Type III Polyketide Synthase that Produces Pentaketide Chromone2005

    • Author(s)
      T.Abe, Y.Utsumi, S.Oguro, H.Morita, Y.Sano, H.Noguchi
    • Journal Title

      J.Am.Chem.Soc. 127(5)

      Pages: 1362-1363

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Chalcone Synthase Superfmaily of Type III Polyketide Synthases from Rhubarb (Rheum palmatum)2005

    • Author(s)
      H.Tanaka, H.Noguchi, I.Abe
    • Journal Title

      Proc.Japan Acad. 81

      Pages: 434-440

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Engineered Biosynthesis of Plant Polyketides : Chain Length Control in an Octaketide-Producing Plant Type III Polyketide Synthase2005

    • Author(s)
      I.Abe, S.Oguro, Y.Utsumi, Y.Sano, H.Noguchi
    • Journal Title

      J.Am.Chem.Soc. 127(36)

      Pages: 12709-12716

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Japanese morning glory dusky mutants displaying reddish-brown or purplish-gray flowers are deficient in a novel glycosylation enzyme for anthocyanin biosynthesis, UDP-glucose : anthocyanidin 3-O-glucoside -2" -O- glucosyltransferase, due to 4-bp insertions in the gene2005

    • Author(s)
      Y.Morita, A.Hoshino, Y.Kikuchi, H.Okuhara, E.Ono, Y.Tanaka, Y.Fukui, J.Saito, E.Nitasaka, H.Noguchi, S.Iida
    • Journal Title

      The Plant Journal 42

      Pages: 353-363

    • Related Report
      2005 Annual Research Report
  • [Journal Article] A Plant Type III Polyketide Synthase that Produces Pentaketide Chromone2005

    • Author(s)
      I.Abe, Y.Utsumi, S.Oguro, H.Morita, Y.Sano, H.Noguchi;
    • Journal Title

      J.Am.Chem.Soc. 127(5)

      Pages: 1362-1363

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Active site residues governing substrate selectivity and polyketide chain length in aloesone synthase2004

    • Author(s)
      I.Abe, T.Watanabe, W.Lou, H.oguchi
    • Journal Title

      FEBS Journal (EUR.J.BIOCHEM.) 273

      Pages: 208-218

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary

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Published: 2005-04-01   Modified: 2016-04-21  

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