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Dynamics of the essential trace element selenium in mammals and molecular basis for selenoprotein biosynthesis

Research Project

Project/Area Number 17370037
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionKyoto University

Principal Investigator

ESAKI Nobuyoshi  Kyoto University, Institute for Chemical Research, Professor (50135597)

Co-Investigator(Kenkyū-buntansha) KURIHARA Tatsuo  KYOTO UNIVERSITY, Institute for Chemical Research, Associate Professor (70243087)
MIHARA Hisaaki  KYOTO UNIVERSITY, Institute for Chemical Research, Assistant Professor (30324693)
Project Period (FY) 2005 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥14,800,000 (Direct Cost: ¥14,800,000)
Fiscal Year 2006: ¥5,400,000 (Direct Cost: ¥5,400,000)
Fiscal Year 2005: ¥9,400,000 (Direct Cost: ¥9,400,000)
Keywordsselenium / selenoprotein / selenocysteine / essential trace element / enzyme / 翻訳 / SECIS / セレノシステインリアーゼ
Research Abstract

Selenium is an essential trace element with a variety of physiological role and is strictly discriminated from its cognate sulfur to be incorporated into a specific position of proteins as a selenocysteine residue. Mammalian cells are proposed to contain 25 selenoproteins. Selenocysteine residues are not directly synthesized from free selenocysteine but are biosynthesized from an active form of selenium which is formed from selenocysteine by decomposition at the translation step. In the current study, we identified factors involved in selenoprotein biosynthesis in mammalian cells and analyzed their functions.
1. We identified nucleolin and RAD17 as novel proteins which sqiecifically recognize and bind to selenocysteine insertion sequence (SECTS).
2. Selenccystiene lyase (SCL) decomposes L-selenocysteine to form selenium and L-alanine and is involved in selenoprotein biosynthesis. We salved X-ray crystal structure of SCL from rat in the native form and in the complexed form with L-cysteine. In the structure of SCL complexed with L-cysteine, the thiol group of L-cysteine was coordinated to bind to PLP-lysine Shiff base of the enzyme. The result suggest that Cys 375 of SCL plays an important role in the strict substrate specificity of the enzyme toward L-selenocysteine.
3. We constructed the mutants of selenophosphate synthetase (SeID) from Escherichia coli by site directed mutagenesis. The analysis showed that a highly conserved cysteine residue (Cys17) of SeID is essential for the catalytic activity of the enzyme.

Report

(3 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • Research Products

    (36 results)

All 2008 2007 2006 2005

All Journal Article (17 results) (of which Peer Reviewed: 4 results) Presentation (19 results)

  • [Journal Article] Thioredoxin Reductase 1 Is Important for Selenoprotein Biosynthesis in HeLa Cells2008

    • Author(s)
      Kurokawa, Suguru
    • Journal Title

      Biomed. Res. Trace Elem. 19(印刷中)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Selenite Assimilation into Formate Dehydrogenase H Depends on Thioredoxin Reductase in Escherichia coli2008

    • Author(s)
      Takahata, Muneaki
    • Journal Title

      J. Biochem. 143

      Pages: 467-473

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Thioredoxin Reductase 1 Is Important for Selenoprotein Biosynthesis in HeLa Cells2008

    • Author(s)
      Kurokawa, Suguru
    • Journal Title

      Biomed. Res. Trace Elem. 19(in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Selenite Assimilation into Fonnate Dehydrogenase H Depends on Thioredoxin Reductase in Escherichia coli2008

    • Author(s)
      Takahata, Muneaki
    • Journal Title

      J. Biochem. 143

      Pages: 467-473

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Biochemical and genetic analysis of the γ-resorcylate (2,6-dihydroxybenzoate) catabolic pathway in Rhizobium sp strain MTP-10005: Identification and functional analysis of its gene cluster2007

    • Author(s)
      Yoshida, Masahiro, et. al.
    • Journal Title

      J. Bacteriol. 189・5

      Pages: 1573-1581

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Selenoprotein biosynthesis and selenium-specific enzymes2006

    • Author(s)
      Mihara, Hisaaki
    • Journal Title

      Biomed. Res. Trace Elem. 17

      Pages: 355-359

    • NAID

      10018143662

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Enzymatic synthesis of L-pipecolic acid by Δ^1-piperideine-2-carboxylate reductase from Pseudomonas putida2006

    • Author(s)
      Muramatsu, Hisashi, et. al.
    • Journal Title

      Biosci. Biotechnol. Biochem. 70・9

      Pages: 2296-2298

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Enzymatic synthesis of cyclic amino acids by N-methyl-L-amino aciddehydrogenase from Pseudomonas putida2006

    • Author(s)
      Yasuda, Mari, et. al.
    • Journal Title

      Tetrahedron Asymmet. 17・12

      Pages: 1775-1779

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Mechanism of the reaction catalyzed by DL-2-haloacid dehalogenase asdetermined from kinetic isotope effects2006

    • Author(s)
      Papajak, Ewa
    • Journal Title

      Biochemistry 45・19

      Pages: 6012-6017

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Physicochemical and pharmacokinetic characterization of highly potent recombinant L-methionine gamma-lyase conjugated with polyethylene glycol as an antitumor agent2006

    • Author(s)
      Takakura, T.
    • Journal Title

      CANCER RESEARCH 66・5

      Pages: 2807-2814

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Physiological role of D-amino acid N-acetyltransferase of Saccharomyces cerevisiae : detoxification of D-amino acids2006

    • Author(s)
      Yow, G.Y.
    • Journal Title

      ARCHIVES OF MICROBIOLOGY 185・1

      Pages: 39-46

    • Related Report
      2005 Annual Research Report
  • [Journal Article] High-level expression and bulk crystallization of recombinant L-methionine gamma-lyase, an anticancer agent2006

    • Author(s)
      Takakura, T.
    • Journal Title

      APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 70・2

      Pages: 183-192

    • Related Report
      2005 Annual Research Report
  • [Journal Article] RNAi-mediated knock down of mammalian selenocysteine lyase2005

    • Author(s)
      Kurokawa, Suguru
    • Journal Title

      Biomed. Res. Trace Elem. 16

      Pages: 321-324

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] KNAi-mediated knock down of mammalian selenocysteine lyase2005

    • Author(s)
      Kurokawa, Suguru
    • Journal Title

      Biomed. Res. Trace Elem. 16

      Pages: 321-324

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Crystal Structures of Δ^1-piperideine-2-carboxylate/Δ^1-pyrroline-2-carboxylate reductase Belonging to a new family of NAD(P)H-dependent Oxidoreductases2005

    • Author(s)
      Goto, M.
    • Journal Title

      JOURNAL OF BIOLOGICAL CHEMISTRY 280・49

      Pages: 40875-40884

    • Related Report
      2005 Annual Research Report
  • [Journal Article] 2-Haloacrylate reductase, a novel enzyme of the medium chain dehydrogenase/reductase superfamily that catalyzes the reduction of a carbon-carbon double bond of unsaturated organohalogen compounds2005

    • Author(s)
      Kurata, A.
    • Journal Title

      JOURNAL OF BIOLOGICAL CHEMISTRY 280・21

      Pages: 20286-20291

    • Related Report
      2005 Annual Research Report
  • [Journal Article] N-Methyl-L-amino acid dehydrogenase from Pseudomonas putida - A novel member of an unusual NAD(P)-dependent oxidoreductase superfamily2005

    • Author(s)
      Mihara, H.
    • Journal Title

      FEBS JOURNAL 272・5

      Pages: 1117-1123

    • Related Report
      2005 Annual Research Report
  • [Presentation] Mechanism of selenocysteine lyase : strict discrimination between selenium and sulfur2007

    • Author(s)
      Esaki, Nobuyoshi
    • Organizer
      ISTERH//NTES/HITES2007
    • Place of Presentation
      Crete. Greece
    • Year and Date
      2007-10-24
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] The Cellular Function of Selenocysteine Lyase in Selenoprotein Synthesis2007

    • Author(s)
      Mihara, Hisaaki
    • Organizer
      ISTERH//NTES/HITES2007
    • Place of Presentation
      Crete. Greece
    • Year and Date
      2007-10-24
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] Mechanism of selenocysteine lyase: strict discrimination between selenium and sulfur2007

    • Author(s)
      Esaki, Nobuyoshi
    • Organizer
      ISTERH//NTES/HITES.2007
    • Place of Presentation
      Crete, Greece
    • Year and Date
      2007-10-10
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] The Cellular Function of Selenocysteine Lyase in Selenoprotein Synthesis2007

    • Author(s)
      Mihara, Hisaaki
    • Organizer
      ISTERH//NTES/HITES 2007
    • Place of Presentation
      Crete, Greece
    • Year and Date
      2007-10-10
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] セレン生化学研究の進展2007

    • Author(s)
      江崎信芳
    • Organizer
      第18回日本微量元素学会
    • Place of Presentation
      福井県福井市
    • Year and Date
      2007-07-05
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] チオレドキシン還元酵素のセレンタンパク質生合成への関与2007

    • Author(s)
      黒川優
    • Organizer
      第18回日本微量元素学会
    • Place of Presentation
      福井県福井市
    • Year and Date
      2007-07-05
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] 哺乳類細胞におけるセレンタンパク質生合成に関わる因子の同定と解析2007

    • Author(s)
      横山いずみ
    • Organizer
      日本農芸化学会2007年度大会
    • Place of Presentation
      東京都世田谷区
    • Year and Date
      2007-03-26
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] セレノシステインリアーゼ反応におけるセレン/硫黄識別機構2007

    • Author(s)
      黒川優
    • Organizer
      日本農芸化学会2007年度大会
    • Place of Presentation
      東京都世田谷区
    • Year and Date
      2007-03-26
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] Identification and analysis of factors involved in selenoprotein biosynthesis in mammalian cells2007

    • Author(s)
      Yokoyama, Izumi
    • Organizer
      Annual Meeting of JSBB A 2007.
    • Place of Presentation
      Tokyo
    • Year and Date
      2007-03-26
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] Mechanism of discrimination between selenium and sulfur in selenocysteine Iyase reaction2007

    • Author(s)
      Kurokawa, Suguru
    • Organizer
      Annual Meeting of JSBBA 2007
    • Place of Presentation
      Tokyo
    • Year and Date
      2007-03-26
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] Progress in selenium biochemistry2007

    • Author(s)
      Esaki, Nobuyoshi
    • Organizer
      The 18th Annual Meeting of the Japan Society for Biomed. Res. Trace Elem.
    • Place of Presentation
      Fukui
    • Year and Date
      2007-02-05
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] Involvement of thioredoxin reductase in selenoprotein biosynthesis2007

    • Author(s)
      Kurokawa, Suguru
    • Organizer
      The 18th Annual Meeting of the Japan Society for Biomed Res Trace Elem
    • Place of Presentation
      Fukui
    • Year and Date
      2007-02-05
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] A comparative study between selenocysteine lyase and cysteine desulfurase2006

    • Author(s)
      Mihara, Hisaaki
    • Organizer
      The 9th International Symposium on Selenium in Biology and Medicine
    • Place of Presentation
      Madison, WI, USA
    • Year and Date
      2006-07-26
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] Mechanism of selenocysteine lyase : strict discrimination between selenium and sulfur2006

    • Author(s)
      Eeaki, Nobuyoshi
    • Organizer
      The 9th International Symposium on Selenium in Biology and Medicine
    • Place of Presentation
      Madison, WI, USA
    • Year and Date
      2006-07-26
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] セレンタンパク質の生合成とセレン特異的酵素2006

    • Author(s)
      三原久明
    • Organizer
      第17回日本微量元素学会
    • Place of Presentation
      静岡県静岡市
    • Year and Date
      2006-07-17
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] ラットセレノシステインリアーゼにおけるシステイン375番目の役割2006

    • Author(s)
      黒川優
    • Organizer
      日本農芸化学会2006年度大会
    • Place of Presentation
      京都府京都市
    • Year and Date
      2006-03-26
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] Role of Cys-375 of rat selenocysteine lyase2006

    • Author(s)
      Kurokawa, Suguru
    • Organizer
      Annual Meeting of JSBBA 2006
    • Place of Presentation
      Kyoto
    • Year and Date
      2006-03-26
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] Mechanism of selenocysteine lyase: strict discrimination between selenium and sulfur2006

    • Author(s)
      Esaki, Nobuyoshi
    • Organizer
      The 9th International Symposium on Selenium in Biology and Medicine
    • Place of Presentation
      Madison, WI, USA
    • Year and Date
      2006-02-26
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] Selenoprotein biosynthesis and selenium-specific enzymes2006

    • Author(s)
      Mihara, Hisaaki
    • Organizer
      The 17th Annual Meeting of the Japan Society for Biomed. Res. Trace Elem.
    • Place of Presentation
      Shizuoka
    • Year and Date
      2006-02-17
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary

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Published: 2005-04-01   Modified: 2016-04-21  

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