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Research on the dynamics of photosynthate distribution between chloroplast and cytosol

Research Project

Project/Area Number 17380042
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Plant nutrition/Soil science
Research InstitutionHokkaido University

Principal Investigator

SHINANO Takuro  Hokkaido University, Research Faculty of Agriculture., Associate Professor (20235542)

Co-Investigator(Kenkyū-buntansha) OKAZAKI Keiki  National Agricultural Research Center for Hokkaido Region, 農業生物系特定産業技術研究機構・北海道農業研究センター, Researcher (40414750)
Project Period (FY) 2005 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥15,110,000 (Direct Cost: ¥14,000,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2007: ¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2006: ¥3,600,000 (Direct Cost: ¥3,600,000)
Fiscal Year 2005: ¥6,700,000 (Direct Cost: ¥6,700,000)
KeywordsMetabolome / GC-MS / Cellular organelle / Gramineae / Leguminosae / Perimary photosynthate / LC-MS / MS / 一次代謝産物 / フラボノイド / UPLC-MS
Research Abstract

When comparing the behavior of primary photosynthate between rice and soybean, a large amount of primary photosynthate is distributed to starch fraction especially in soybean. As the metabolic pathway regarding photosynthesis, glycolysis, TCA cycle, etc. are same between rice and soybean, the observed difference is assumed to be derived from the different size of the pool of assimilated compounds. To confirm the idea, several genes' expression which are working on metabolites partitioning are investigated at different growth stage. The obtained results support the photosynthate distribution pattern. A large distribution of primary phosynhtate into starch fraction indicate the importance of delivery system among cytosol, chloroplast, and vacuole, thus a new method is developed to separate these organelle without further enzyme reaction during extraction process. Non aqueous fractionation method was developed and applied to soybean leaf. Each fraction was further analyzed by metabolomics approach using gas chromatography mass spectrometry (GC-MS). The metabolomics approach allows us to identify and quantify about 130 compounds in the tissue.

Report

(4 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • 2005 Annual Research Report
  • Research Products

    (53 results)

All 2008 2007 2006 2005 Other

All Journal Article (24 results) (of which Peer Reviewed: 10 results) Presentation (24 results) Book (3 results) Remarks (2 results)

  • [Journal Article] 有機農業への新アプローチ2008

    • Author(s)
      Okazaki, K.
    • Journal Title

      Plant and Cell Physiology 49

      Pages: 170-177

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Effects of nitrogen application on malt modification and DMSP production in two Japanese Barley cultivars.2008

    • Author(s)
      Nanamori, M.
    • Journal Title

      Journal of the Science of Food and Agriculture (印刷中)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Differences in the metabolite profiles of spinach (Spinacia oleracea L.) leaf in different concentrations of nitrate in the culture solution2008

    • Author(s)
      Okazaki, K.
    • Journal Title

      Plant and Cell Physiology 47

      Pages: 170-177

    • NAID

      10027328660

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Differences in the metabolite profiles of spinach(Spinacia oleracea L.)leaf in different concentrations of nitrate in the culture solution.2008

    • Author(s)
      Okazaki, K.
    • Journal Title

      Plant Cell and Physiology 49

      Pages: 170-177

    • NAID

      10027328660

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Metabolic alterations porposed by proteome in rice roots grown under low P ad high Al concentration under low pH.2007

    • Author(s)
      Fukuda, T.
    • Journal Title

      Plant Science 172

      Pages: 1157-1165

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Metabolic profiling and assessment of metabolome compartmentation of soybean leaves using non-aqueous fractionation and GC-MS analysis.2007

    • Author(s)
      Benkeblia, N.
    • Journal Title

      Metabolomics 3

      Pages: 297-305

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Differences in the metabolite profiles of spinach (Spinacia oleracea L.) leaf in different concentrations of nitrate in the culture solution.2007

    • Author(s)
      岡崎圭毅
    • Journal Title

      生物工学会誌 85

      Pages: 482-484

    • NAID

      10027328660

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] 有機農業への新アプローチ2007

    • Author(s)
      信濃卓郎
    • Journal Title

      Materials Integration 27

      Pages: 49-54

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Metabolic profiling and assessment of metabolome compartmentation of soybean leaves using non-aqueous fractionation and GC-MS analysis2007

    • Author(s)
      Benkeblia, N.
    • Journal Title

      Metabolomics 3

      Pages: 1157-1165

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Effect of nitrogen nutrition on metabolic profile2007

    • Author(s)
      Okazaki, K.
    • Journal Title

      Seibutsu-Kogaku Kaishi 85

      Pages: 482-484

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] New approach for organic farming2007

    • Author(s)
      Shinano, T.
    • Journal Title

      Materials Integration 27

      Pages: 49-54

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Metabolite profiling and assessment of metabolome compartmentation of soybean leaves using non-aqueous fractionation and GC-MS analysis.2007

    • Author(s)
      Benkeblia, N.
    • Journal Title

      Metabolomics 3

      Pages: 297-305

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 窒素栄養が代謝プロファイルに与える影響の解析2007

    • Author(s)
      岡崎圭毅
    • Journal Title

      生物工学会誌 85

      Pages: 482-484

    • NAID

      110006479633

    • Related Report
      2007 Annual Research Report
  • [Journal Article] Metabolic alterations proposed by proteome in rice roots grown under low P and high Al concentration under low pH.2007

    • Author(s)
      Fukuda, T.
    • Journal Title

      Plant Science 172・6

      Pages: 1157-1165

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Developmental regulation of photosynthate distribution in leaves of rice.2006

    • Author(s)
      Shinano, T.
    • Journal Title

      Photosynthetica 44

      Pages: 1-10

    • NAID

      120000956914

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Developmental changes of plant affecting primary photosynthate distribution in rice leaves.2006

    • Author(s)
      Shinano, T.
    • Journal Title

      Photosynthetica 44

      Pages: 591-598

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Developmental changes of plant affecting primary photosynthate distribution in rice leaves2006

    • Author(s)
      Shinano, T.
    • Journal Title

      Photosynthetica 44

      Pages: 591-598

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Developmental changes of plant affecting primary photosynthate distribution in rice leaves2006

    • Author(s)
      Shinano, T.
    • Journal Title

      Photosynthetica 44・4

      Pages: 591-598

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Developmental regulation of photosynthate distribution in leaves of rice.2006

    • Author(s)
      Shinano, T.
    • Journal Title

      Photosynthetica 44・1

      Pages: 1-10

    • NAID

      120000956914

    • Related Report
      2006 Annual Research Report 2005 Annual Research Report
  • [Journal Article] Difference in carbon distribution of initial photoassimilates between soy bean and rice was revealed by 20s pulse-300s chase experiments.2005

    • Author(s)
      Okazaki, K.
    • Journal Title

      Soil Science and Plant Nutrition 51

      Pages: 835-840

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Difference in carbon distribution of initial photoassimilates between soybean and rice was revealed by 20s pulse-300s chase experiments2005

    • Author(s)
      Okazaki, K.
    • Journal Title

      Soil Science and Plant Nutrition 51

      Pages: 835-840

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Difference in carbon distribution of initial photoassimilates between soybean and rice was revealed by 20 s pulse-300 s chase experiments.2005

    • Author(s)
      Okazaki, K.
    • Journal Title

      Soil Science and Plant Nutrition 51・6

      Pages: 835-840

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Effects of nitrogen application on malt modification and DMSP production in two Japanese Barley cultivars

    • Author(s)
      Nanamori, M.
    • Journal Title

      Journal of the Science of Food and Agriculture accepted

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Effects of nitrogen application on malt modification and DMSP production in two Japanese Barley cultivars

    • Author(s)
      Nanamori, M.
    • Journal Title

      Journal of the Science of Food and Agriculture accepted

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Root and microorganism2007

    • Author(s)
      Shinano, T.
    • Organizer
      Chikyu Miraigaku Syjmposium
    • Place of Presentation
      Sapporo
    • Year and Date
      2007-05-06
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 植物の根と微生物2007

    • Author(s)
      信濃 卓郎
    • Organizer
      「地球未来学へのいざない」シンポジウム
    • Place of Presentation
      札幌
    • Year and Date
      2007-03-06
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Possibility of rhizosphere regulation by root exudates.2007

    • Author(s)
      Shinano T.
    • Organizer
      International Conference on Sustainable Agriculture for Food, Bioenergy and Livelihood Security.
    • Place of Presentation
      Jabalpur, India
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Comparative transcriptomic analysis under phosphorus deficiency among three model plants.2007

    • Author(s)
      Choi, S-J.
    • Organizer
      Rhizosphere 2
    • Place of Presentation
      Montpellier, France
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 無菌水耕イネ根分泌物のGC-MSによる包括的解析2007

    • Author(s)
      鈴木 克昌
    • Organizer
      植物生理学会
    • Place of Presentation
      松山
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 異なる窒素栄養条件で栽培した水耕ホウレンソウのGC-MSプロファイル解析2007

    • Author(s)
      岡崎 圭毅
    • Organizer
      植物生理学会
    • Place of Presentation
      松山
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] ダイズの種子における一次代謝産物の解析2007

    • Author(s)
      中村 卓司
    • Organizer
      植物生理学会
    • Place of Presentation
      松山
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Possibility of rhizosphere regulation by root exudates2007

    • Author(s)
      Shinano, T.
    • Organizer
      International Conference on Sustainable Agriculture for Food, Bioenergy and Livelihood Security
    • Place of Presentation
      Jabalpur, India
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Comparative transcriptomic analysis under phosphorus deficiency among three model plants. Suzuki, K. Metabolome on rice root exudates2007

    • Author(s)
      Choi, S-J.
    • Organizer
      Rhizosphere 2
    • Place of Presentation
      Montpellier, France
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Metabolome on rice root exudates2007

    • Author(s)
      Suzuki, K.
    • Organizer
      Japanese Society of Plant Physiologist
    • Place of Presentation
      Matsuyama
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] GC-MS profiling on spinach at different nitrogen sources2007

    • Author(s)
      Okazaki, K.
    • Organizer
      Japanese Society of Plant Physiologist
    • Place of Presentation
      Matsuyama
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Primary metabolites in soybean seeds2007

    • Author(s)
      Nakamura, T.
    • Organizer
      Japanese Society of Plant Physiologist
    • Place of Presentation
      Matsuyama
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 水耕イネ根分泌物のGC-MSによる網羅的解析手法の開発2006

    • Author(s)
      鈴木 克昌
    • Organizer
      日本土壌肥料学会北海道支部大会
    • Place of Presentation
      札幌
    • Year and Date
      2006-11-29
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Method for the analysis of rice root exudates metabolome2006

    • Author(s)
      Suzuki K.
    • Organizer
      Japanese Society of Soil Science and Plant Nutrition Hokkaido Branch
    • Place of Presentation
      Sapporo
    • Year and Date
      2006-11-29
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Effect of different inorganic nitrogen sources on the metabolite profiling of spinach (Spinacea orelacea L.) with gas chromatography/mass spectrometry.2006

    • Author(s)
      Okazaki, K.
    • Organizer
      4th International Conference on Plant Metabolomics
    • Place of Presentation
      Reading, UK
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Spatially resolved metabolic profiling of soybean leaves using non-aqueous fractionation.2006

    • Author(s)
      Benkeblia N.
    • Organizer
      4th International Conference on Plant Metabolomics
    • Place of Presentation
      Reading, UK
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Comprehensive analysis of plant leaf by GC-MS.2006

    • Author(s)
      Shinano, T.
    • Organizer
      Hokkaido University International Sustainable Symposium
    • Place of Presentation
      Sapporo Japan
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] GC-MS一斉分析に寄る水耕液中の窒素形態がホウレンソウ体内成分に与える影響の解析2006

    • Author(s)
      岡崎圭毅
    • Organizer
      日本土壌肥料学会
    • Place of Presentation
      秋田
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Effect of different inorganic nitrogen sources on the metabolite profiling of spinach (Spinacea orelacea L.) with gas chromatography/mass spectrometry2006

    • Author(s)
      Okazaki, K.
    • Organizer
      4^<th> International Conference on Plant Metabolomics
    • Place of Presentation
      Reading, UK
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Spatially resolved metabolic profiling of soybean leaves using non-aqueous fractionation2006

    • Author(s)
      Benkeblia, N.
    • Organizer
      4^<th> International Conference on Plant Metabolomics
    • Place of Presentation
      Reading, UK
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Effect of nitrogen form in hydroponic culture on the spinach metabolites by GC-MS2006

    • Author(s)
      Okazaki, K.
    • Organizer
      Japanese Society of Soil Science and Plant Nutrition
    • Place of Presentation
      Akita
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] New insights on primary photosynthate distribution between rice and soybean.2005

    • Author(s)
      Shinano, T.
    • Organizer
      15th International Plant Nutrition Colloquium
    • Place of Presentation
      Beijing, China
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] New insights on primary photosynthate distribution between rice and soybean.2005

    • Author(s)
      Shinano, T.
    • Organizer
      15^<th> International Plant Nutrition Colloquium
    • Place of Presentation
      Beijing, China
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Comprehensive analysis of plant leaf by GC-MS

    • Author(s)
      Shinano, T.
    • Organizer
      Hokkaido University International Sustainable Symposium
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] 「根圏メタボロミクス」メタボロミクスの解析と応用技術2008

    • Author(s)
      岡崎 圭毅
    • Publisher
      シーエムシー出版
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] (根圏メタボロミクス)メタボロミクスの解析と応用技術2008

    • Author(s)
      鈴木克昌
    • Publisher
      シーエムシー出版
    • Related Report
      2007 Annual Research Report
  • [Book] New insights on primary photosynthate distribution between rice and soybean. (Plant Nutrition-for Food Security, Human Health and Environmental Protection)2005

    • Author(s)
      Shinano, T.
    • Publisher
      Tsinghua University Press
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Remarks] 「研究成果報告書概要(和文)」より

    • URL

      http://www.hucc.hokudai.ac.jp/~a11277/shinano.html

    • Related Report
      2007 Final Research Report Summary
  • [Remarks]

    • URL

      http://www.hucc.hokudai.ac.jp/~a11277/shinano.html

    • Related Report
      2007 Annual Research Report

URL: 

Published: 2005-04-01   Modified: 2016-04-21  

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