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Obsevation of ordered biomolecules in solution by using CSI-MS

Research Project

Project/Area Number 17390008
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Chemical pharmacy
Research InstitutionTokushima Bunri University

Principal Investigator

YAMAGUCHI Kentaro  Tokushima Bunri University, Faculty of Pharmaceutical Sciences at Kagawa Campus, professor (50159208)

Co-Investigator(Kenkyū-buntansha) DANJYO Hiroshi  Tokushima Bunri University, Faculty of Pharmacesutical Sciences at Kagawa Campus, associate professor (70332567)
SEKI Hiroko  Chiba University, Chemical Analysis Center, associate professor (60114245)
SEI Yoshihisa  Tokushima Bunri University, Faculty of Pharmacesutical Sciences at Kagawa Campus, assistant professor (40389177)
小林 稔  徳島文理大学, 香川薬学部, 助手 (50389178)
Project Period (FY) 2005 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥15,820,000 (Direct Cost: ¥14,800,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2007: ¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2006: ¥3,500,000 (Direct Cost: ¥3,500,000)
Fiscal Year 2005: ¥7,900,000 (Direct Cost: ¥7,900,000)
Keywordscold-spray ionization / mass spectrometry / high throughput analysis / HAS / catechin / DNA / RNA / cluster / 分子化合物 / クリスタルエンジニアリング / 安息香酸 / ビスグアニジン類 / 分子拡散 / 単結晶X解析 / NMR解析 / コールドスプレー / DNA / 水素結合複合体 / 分子会合
Research Abstract

Various biomolecules were analyzed in solution by using cold spray ionization (CSI) mass spectrometry to reveal the intermolecular interactions. Protein bound water molecules were clearly observed for example. This method also proved the weak intermolecular interaction between several small molecules and HAS, suggesting high throughput analysis using mass spectrometry. CSI mass spectrometric analysis for green tea catechins bound to DNA and RNA contributed to the study of cancer prevention. On the other hand, rather basic investigations with respect to solution chemistry was done in the case analyzing bisguanidine(BG)-benzoic acid (BA) interactions. These molecular interactions to form aggregated species based on hydrogen bonding were observed using CSI method in solution as well as in the crystal. In developing this method, we found a new technique to elucidate dynamic solution structure of reaction intermediate, which are rapidly transforming in the reaction vessel. We named this method RTS (reaction tracking system) and several analytical results were shown.

Report

(4 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • 2005 Annual Research Report
  • Research Products

    (13 results)

All 2008 2007 2006 2005

All Journal Article (10 results) (of which Peer Reviewed: 3 results) Presentation (2 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Optical resolution of(±)-1,2-Bis(2-methylphenyl)ethylene-1,2-diamine as a Chiral Framework for 2-Iminoimidazolidine with 2-Methylphenyl Pendant and the Guanidine-Catalyzed Asymmetric Michael Reaction of tert-Butyl Diphenyliminoacetate and Ethyl Acrylate±2008

    • Author(s)
      Ryoda, A.;Yajima, N.;Haga, T.;Kumamoto, T.;Nakanishi, W.;Kawahata, M.;Yamaguchi, K.;Ishikawa, T.
    • Journal Title

      J.Org.Chem. 73

      Pages: 133-141

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Optical resolution of(±)-1, 2-Bis(2-methylphenypethylene-1, 2-diamine as a Chiral Framework for 2-Iminoimidazolidine with 2-Methylphenyl Pendant and the Guanidine-Catalyzed Asymmetric Michael Reaction of tert-Butyl Diphenyliminoacetate and Ethyl Acrylate ±2008

    • Author(s)
      Ryoda, A. ; Yajima, N. ; Haga, T. ; Kumamoto, T. ; Nakanishi, W. ; Kawahata, M. ; Yamaguchi, K. ; Ishikawa, T.
    • Journal Title

      J. Org. Chem. 73

      Pages: 133-141

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Synergistic Effects of Multiple Treatments,and Both DNA and RNA Direct Bindings on,Green Tea Catechins2007

    • Author(s)
      Kuzuhara, T.;Tanabe, A.;Sei, Y.;Yamaguchi, K.;Suganuma, M.;Fujiki, H.
    • Journal Title

      Molecular Carcinogenesis 46

      Pages: 640-645

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Synergistic Effects of Multiple Treatments, and Both DNA and RNA Direct Bindings on, Green Tea Catechins2007

    • Author(s)
      Kuzuhara, T. ; Tanabe, A. ; Sei, Y. ; Yamaguchi, K. ; Suganuma, M. ; Fujiki, H.
    • Journal Title

      Molecular Carcinogenesis 46

      Pages: 640-645

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] DNA and RNA as New Binding Targets of Green Tea Catechins2006

    • Author(s)
      Kuzuhara, T.;Sei, Y.;Yamaguchi, K.;Suganuma, M.;Fujiki, H.
    • Journal Title

      Journal of Biological Chem. 281(25)

      Pages: 17446-17456

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] DNA and RNA as New Binding Targets of Green Tea Catechins2006

    • Author(s)
      Kuzuhara, T. ; Sei, Y. ; Yamaguchi, K. ; Suganuma, M. ; Fujiki, H.
    • Journal Title

      Journal of Biologigal Chem. 281(25)

      Pages: 17446-17456

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Absolute Ordered Cluster Formation of an o-Bisguanidinobenzene - Benzoic Acid Complexes2006

    • Author(s)
      Kawahata, M., Shikii, K., Seki, H., Ishikawa, T., Yamaguchi, K.
    • Journal Title

      Chem.Pharm.Bull. 54

      Pages: 147-148

    • NAID

      110004820346

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Observation of Water Molecules Bound to a Protein Using Cold-Spray Ionization Mass Spectrometry2005

    • Author(s)
      Sei, Y., Shimotakahara, S., Ishii, J., Shindo, H., Seki, H., Yamaguchi, K., Tashiro, M.
    • Journal Title

      Anal.Sci. 21

      Pages: 449-451

    • NAID

      10015513763

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Intermolecular Hydrogen Bonding of Steroid Compounds : PFG NMR Diffusion Study, Cold-Spray Ionization(CSI)-MS and X-ray Analysis2005

    • Author(s)
      Shikii, K., Seki, H., Sakamoto, S., Sei, Y., Utsumi, H., Yamaguchi, K.
    • Journal Title

      Chem.Pharm.Bull. 53

      Pages: 792-795

    • NAID

      10016655065

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Flexible self-assembling porphyrin supramolecules2005

    • Author(s)
      Johnstone, K., Yamaguchi, K., Gunter, M.
    • Journal Title

      Org.Biomol.Chem.

      Pages: 3008-3017

    • Related Report
      2005 Annual Research Report
  • [Presentation] 「研究成果報告書概要(欧文)」より2008

    • Author(s)
      Sei, Y.;Shibuta, M.;Kuzuhara, Takashi.;Fujiki, H.;Kannuma, M.;Yamaguchi. K.
    • Organizer
      Pharmaceutical Society of Japan 128th Annual Meeting
    • Place of Presentation
      Yokohama
    • Year and Date
      2008-03-26
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] CSI-MSによるDNA-カテキン相互作用の観測2008

    • Author(s)
      清 悦久, 渋田 真裕美, 葛原 隆, 藤木 博太, 菅沼 雅美, 山口 健太郎
    • Organizer
      日本薬学会第128年会
    • Place of Presentation
      神奈川
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Patent(Industrial Property Rights)] イオン脱着を利用した光応答分子システム2006

    • Inventor(s)
      山口 健太郎, 小林 稔
    • Industrial Property Rights Holder
      科学技術振興機構
    • Filing Date
      2006-02-17
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary

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Published: 2005-04-01   Modified: 2016-04-21  

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