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Molecular dissection of organization and dynamics of lipid domains in biomembranes

Research Project

Project/Area Number 17390025
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biological pharmacy
Research InstitutionRIKEN

Principal Investigator

KOBAYASHI Toshihide  RIKEN, Lipid Biology Laboratory, 小林脂質生物学研究室, 主任研究員 (60162004)

Co-Investigator(Kenkyū-buntansha) SHOGOMORI Hidehiko  RIKEN, Sphingolipid Functions Laboratory, スフィンゴ脂質機能研究チーム, 研究員 (80391986)
ISHITSUKA Reiko  RIKEN, Lipid Biology Laboratory, 小林脂質生物学研究室, 研究員 (60342747)
MAKINO Asami  RIKEN, Sphingolipid Functions Laboratory, スフィンゴ脂質機能研究チーム, リサーチアソシエイト (20373368)
Project Period (FY) 2005 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥15,000,000 (Direct Cost: ¥15,000,000)
Fiscal Year 2006: ¥5,800,000 (Direct Cost: ¥5,800,000)
Fiscal Year 2005: ¥9,200,000 (Direct Cost: ¥9,200,000)
KeywordsBiomembrane / Lipid bilayer / Lipid domain / Lipid probe / Lipid raft / Endocytosis / Endosome / Cholesterol / 後期エンドソーム / ビス(モノアシルグリセロ)リン酸 / リゾビスボスファチジン酸 / ガングリオシド / スフィンゴリピドーシス / 膜結合毒素 / 膜ドメイン / スフィンゴミエリン / GM1 / シグナル伝達
Research Abstract

(1) Characterization of lipid probes
Lysenin is a pore-forming toxin that specifically binds sphingomyelin (SM). The binding of the toxin to the membrane is accompanied by the oligomerization of the protein, leading to pore formation. Although a previous study showed that SM/cholesterol liposomes were 10,000 times more effective than SM liposomes in inhibiting lysenin-induced hemolysis, the role of cholesterol is not precisely clarified. Our results indicate that both cholesterol and the SM/lysenin ratio control the amount of lysenin monomer via altering the state of protein oligomerization, thus affecting hemolysis.
Duramycin is a 19 amino acid tetracyclic lantibiotic closely related to cinnamycin, which is known to bind phosphatidyl-ethanolamine (PE). The lipid specificity of duramycin was not established. Our study indicates that both duramycin and cinnamycin exclusively bind to ethanolamine phospholipids in curvature-dependent manner.
(2) Regulation of endocytosis by cholesterol
Cellular cholesterol increases when cells reach confluency in Chinese hamster ovary (CHO) cells. We showed that the endocytic pathways of several fluorescent lipids were altered in cell confluency-dependent manner. The crucial role of cellular cholesterol in cell-confluency dependent endocytosis was suggested. Our results also suggest that cholesterol controls endocytic routes of a subset of membrane lipids through rab11.
(3) Regulation of cellular cholesterol homeostasis by endosome lipid domains
Using D-PDMP and ganglioside GM1, it is shown that the structure alteration of bis (monoacylglycero) phosphate (BMP)-rich late endosome lipid domain plays a crucial role in cellular cholesterol accumulation. We also employed anti-BMP monoclonal antibody to examine the role of BMP domain in cholesterol homeostasis in macrophages.

Report

(3 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • Research Products

    (49 results)

All 2007 2006 2005

All Journal Article (43 results) Book (6 results)

  • [Journal Article] pH-dependent formation of membranous cytoplasmic body-like structure of ganglioside GM1/bis(monoacylglycero)phosphate mixed membranes2007

    • Author(s)
      Hayakawa T
    • Journal Title

      Biophys J 92

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] Cholesterol and lipid/protein ratio control the oligomerization of a sphingomyelin-specific toxin, lysenin2007

    • Author(s)
      Ishitsuka R
    • Journal Title

      Biochemistry 46

      Pages: 1495-1502

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] Increased lipid rafts and accelerated lipopolysaccharide-induced tumor necrosis factor alpha secretion in Abca1-deficient macrophages2007

    • Author(s)
      Koseki M
    • Journal Title

      J Lipid Res 48

      Pages: 299-306

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Anti-bis(monoacylglycero)phosphate antibody induces the accumulation of acetylated-low density lipoprotein-derived cholesterol in cultured macrophages2007

    • Author(s)
      Delton-Vandenbroucke I
    • Journal Title

      J Lipid Res 48

      Pages: 543-552

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Stage specific association of apolipoprotein A-I and E in developing mouse retina2007

    • Author(s)
      Kurumada S
    • Journal Title

      Invest Opht Vis Sci 48

      Pages: 1815-1823

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] EC-STM observation on electrochemical response of fluidic phospholipid monolayer on Au(111) modified with 1-octanethiol2007

    • Author(s)
      Matsunaga S
    • Journal Title

      Electrochem Commun 9

      Pages: 645-650

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Structural characterization of N-lignoceroyl (C24 : 0) sphingomyelin bilayer membranes : A reevaluation2007

    • Author(s)
      Takahashi H
    • Journal Title

      J Appl Cryst 40

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Cholesterol controls lipid endocytosis through Rab112007

    • Author(s)
      Takahashi M
    • Journal Title

      Mol Biol Cell (in press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Curvature-dependent recognition of ethanolamine phospholipids by duramycin and cinnamycin2007

    • Author(s)
      Iwamoto K
    • Journal Title

      Biophys J (in press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Membrane properties of dipalmitoyl bis(monoaclyglycero)phosphate2007

    • Author(s)
      Hayakawa T
    • Journal Title

      Membrane (in press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Monitoring the distribution and dynamics of signaling microdomains in living cells with lipid-specific probes2007

    • Author(s)
      Hullin-Matsuda F
    • Journal Title

      Cell Mol Life Sci (in press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] pH-dependent formation of membranous cytoplasmic body-like structure of ganglioside GM1/bis(monoacylglycero)phosphate mixed membranes2007

    • Author(s)
      Hayakawa T
    • Journal Title

      Biophys. J. 92

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Cholesterol and lipid/protein ratio control the oligomerization of a sphingomyelin-specific toxin lysenin2007

    • Author(s)
      Ishitsuka R
    • Journal Title

      Biochemistry 46

      Pages: 1495-1502

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Increased lipid rafts and accelerated lipopolysaccharide-induced tumor necrosis factor alpha secretion in Abca1-deficient macrophages2007

    • Author(s)
      Koseki M
    • Journal Title

      J. Lipid Res. 48

      Pages: 299-306

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Anti-bis (monoacylglycero) phosphate antibody induces the accumulation of acetylated-low density lipoprotein-derived cholesterol in cultured macrophages2007

    • Author(s)
      Delton-Vandenbroucke I
    • Journal Title

      J. Lipid Res. 48

      Pages: 543-552

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Stage specific association of apolipoprotein A-I and E in developing mouse retina2007

    • Author(s)
      Kurumada S
    • Journal Title

      Invest. Opht. Vis. Sci. 48

      Pages: 1815-1823

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] EC-STM observation on electrochemical response of fluidic phospholipid monolayer on Au(111) modified with 1-octanethiol2007

    • Author(s)
      Matsunaga S
    • Journal Title

      Electrochem. Commun. 9

      Pages: 645-650

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Structural characterization of N-lignoceroyl (C24 : 0) sphingomyelin bilayer membranes : A reevaluation2007

    • Author(s)
      Takahashi H
    • Journal Title

      J. Appl. Cryst. 40

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Membrane properties of dipalmitoyl bis (monoaclyglycero) phosphate2007

    • Author(s)
      Hayakawa T
    • Journal Title

      Membrane (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Monitoring the distribution and dynamics of signaling microdomains in living cells with lipid-specific probes2007

    • Author(s)
      Hullin-Matsuda F
    • Journal Title

      Cell. Mol. Life Sci. (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Anti-bis(monoacylglycero)phosphate antibody induces the accumulation of acetylated-low density lipoprotein-derived cholesterol in cultured macrophages2007

    • Author(s)
      Delton-Vandenbroucke I
    • Journal Title

      J Lipid Res (in press)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] D-threo-1-phenyl-2-decanoylamino-3-morpholino-1-propanol alters cellular cholesterol homeostasis by modulating the endosome lipid domains2006

    • Author(s)
      Makino A
    • Journal Title

      Biochemistry 45

      Pages: 4530-4541

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] Selective incorporation of docosahexaenoic acid tolysobisphosphatidic acid in cultured THP-1 macrophages2006

    • Author(s)
      Besson N
    • Journal Title

      Lipids 41

      Pages: 189-196

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Corrective effect of yeast recombinant human a-galactosidase having N-linked sugar chains suitable for lysosomal delivery on Fabry mice2006

    • Author(s)
      Sakuraba H
    • Journal Title

      J Hum Gen 51

      Pages: 341-352

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Differential membrane packing of stereoisomers of bis(monoacylglycero)phosphate2006

    • Author(s)
      Hayakawa T
    • Journal Title

      Biochemistry 45

      Pages: 9198-9209

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] Caveolar endocytosis and microdomain association of a glycolipid analog is dependent on its sphingosine stereochemistry2006

    • Author(s)
      Singh RD
    • Journal Title

      J Biol Chem 281

      Pages: 30660-30668

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] Lipid rafts. New tools and a new component2006

    • Author(s)
      Kobayashi T
    • Journal Title

      Biol Pharm Bull 29

      Pages: 1526-1531

    • NAID

      110005663983

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] D-threo-1-phenyl-2-decanoylamino-3- morpholino-1-propanol alters cellular cholesterol homeostasis by modulating the endosome lipid domains.2006

    • Author(s)
      Makino A
    • Journal Title

      Biochemistry 45

      Pages: 4530-41

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Selective incorporation of docosahexaenoic acid to lysobisphosphatidic acid in cultured THP-1 macrophages2006

    • Author(s)
      Besson N
    • Journal Title

      Lipids 41

      Pages: 189-196

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Corrective effect of yeast recombinant human a-galactosidase having N-linked sugar chains suitable for lysosomal delivery on Fabry mice2006

    • Author(s)
      Sakuraba H
    • Journal Title

      J. Hum. Gen. 51

      Pages: 341-52

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Differential membrane packing of stereoisomers of bis (monoacylglycero) phosphate2006

    • Author(s)
      Hayakawa T
    • Journal Title

      Biochemistry 45

      Pages: 9198-9209

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Caveolar endocytosis and microdomain association of a glycolipid analog is dependent on its sphingosine stereochemistry2006

    • Author(s)
      Singh RD
    • Journal Title

      J. Biol. Chem. 281

      Pages: 30660-30668

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Lipid rafts. New tools and a new component2006

    • Author(s)
      Kobayashi T
    • Journal Title

      Biol. Pharm. Bull. 29

      Pages: 1526-1531

    • NAID

      110005663983

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] D-threo-1-phenyl-2-decanoylamino-3-morpholino-1-propanol alters cellular cholesterol homeostasis by modulating the endosome lipid domains2006

    • Author(s)
      Makino A
    • Journal Title

      Biochemistry (in press)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Selective incorporation of docosahexaenoic acid to lysobisphosphatidic acid in cultured THP-1 macrophages2006

    • Author(s)
      Besson N
    • Journal Title

      Lipids (in press)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Corrective effect of yeast recombinant human α-galactosidase having N-linked sugar chains suitable for lysosomal delivery on Fabry mice2006

    • Author(s)
      Sakuraba H
    • Journal Title

      J Hum Genet (in press)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Spatial and functional heterogeneity of sphingolipid-rich membrane domains2005

    • Author(s)
      Kiyokawa E.
    • Journal Title

      J Biol Chem 280

      Pages: 24702-24784

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Role of membrane sphingomyelin and ceramide in platform formation for Fas-mediated apoptosis2005

    • Author(s)
      Miyaji M
    • Journal Title

      J Exp Med 202

      Pages: 249-259

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Spatial and functional heterogeneity of sphingolipid-rich membrane domains2005

    • Author(s)
      Kiyokawa E
    • Journal Title

      J. Biol. Chem. 280

      Pages: 24072-24084

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Role of membrane sphingomyelin and ceramide in platform formation for Fas-mediated apoptosis.2005

    • Author(s)
      Miyaji M
    • Journal Title

      J. Exp. Med. 202

      Pages: 249-59

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Spatial and functional heterogeneity of sphinogolipid-rich membrane domains2005

    • Author(s)
      Kiyokawa E
    • Journal Title

      J Biol Chem 280

      Pages: 24072-24084

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Role of membrane shingomyelin and ceramide in platform formation for Fas-mediated apoptosis2005

    • Author(s)
      Miyaji M
    • Journal Title

      J Exp Med 202

      Pages: 249-259

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Imaging lipid rafts2005

    • Author(s)
      Ishituska R
    • Journal Title

      J Biochem 137

      Pages: 249-254

    • Related Report
      2005 Annual Research Report
  • [Book] Probes and Tags to Study Biomolecular Function2007

    • Author(s)
      Ishitsuka R
    • Publisher
      Wiley(in press)
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Book] Sphingolipid Biology 20052006

    • Author(s)
      Kobayashi T
    • Total Pages
      531
    • Publisher
      Springer Tokyo
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Book] Sphingolipid Biology2006

    • Author(s)
      Kobayashi T
    • Total Pages
      531
    • Publisher
      Springer-Verlag Tokyo
    • Related Report
      2006 Annual Research Report
  • [Book] リボソーム応用の新展開-人工細胞の開発に向けて-2005

    • Author(s)
      庄籠秀彦
    • Total Pages
      752
    • Publisher
      エヌ・ティー・エス
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Book] 化学と生物実験ライン54細胞生物学実験法 III 細胞解析法-IV2005

    • Author(s)
      小林俊秀
    • Total Pages
      110
    • Publisher
      廣川書店
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Book] Cell Biology : A Laboratory Handbook2005

    • Author(s)
      Kobayashi T
    • Publisher
      Elsevier, Burlington
    • Related Report
      2005 Annual Research Report

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Published: 2005-04-01   Modified: 2016-04-21  

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