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Study on molecular genetic heterogeneities among human populations in/near Japan at DNA markers in human non-coding regions

Research Project

Project/Area Number 17390200
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Legal medicine
Research InstitutionNagoya University

Principal Investigator

YAMAMOTO Toshimichi  Nagoya University, Graduate School of Medicine, Associate Professor, 大学院医学系研究科, 助教授 (50260592)

Co-Investigator(Kenkyū-buntansha) UCHIHI Rieko  Nagoya University, Graduate School of Medicine, Research Associate, 大学院医学系研究科, 助手 (20223571)
TAMAKI Keiji  Kyoto University, Graduate School of Medicine, Professor, 大学院医学研究科, 教授 (90217175)
勝又 義直  名古屋大学, 大学院・医学系研究科, 教授 (30109326)
Project Period (FY) 2005 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥12,700,000 (Direct Cost: ¥12,700,000)
Fiscal Year 2006: ¥5,100,000 (Direct Cost: ¥5,100,000)
Fiscal Year 2005: ¥7,600,000 (Direct Cost: ¥7,600,000)
KeywordsPopulation genetics / Non-coding region / Japanese / STR / Genetic heterogeneity / Phylogenetic relationship / Gene pool / 遺伝プール
Research Abstract

The genotypes for 105 autosomal STR loci were analyzed using 32 individuals each from two regional Japanese (Nagoya and Okinawa), five regional Han-Chinese (Beijing, Shaanxi, Hunan, Guangdong and Fujian), a Thai (Bangkok) and a Burmese (Yangon) populations and a Caucasian (England) population as an outer group. Using those genotype data and allele frequency data, genetic relationship and gene pool structures between Japanese and Chinese among those nine East and Southeast Asian populations were examined by constructing a phylogenetic tree (NJ tree) and performing a Multi-Dimensional Scaling (MDS) analysis and Structure-Distruct analysis, and the results obtained were published in Human Genetics. As a result, it was shown that Japanese formed a different cluster and possessed different genetic structural elements from five regional Han-Chinese populations. Furthermore, the modern Japanese may consist of people who originated from northern China and blended with people affected by those … More from southern part of China. Additionally, three regional Japanese and two regional Mongolian populations were analyzed for those 105 STR loci. Using those data and those from nine Asian populations mentioned above, when 3D-dot analysis with Genetix software was performed, five regional Japanese, Beijing Han-Chinese, the other four Han-Chinese, two Southeast Asian, and two regional Mongolian populations were almost separately distributed as five blocks. It was shown that those five regional Japanese populations were apparently different from the continental populations, and that Nagasaki regional populations included more continental elements than the other four regional Japanese ones. A part of these results were presented at the 60th annual meeting of the Anthropological Society of Nippon.
In the present study, it was suggested that a distinguishable heterogeneity between genetically very close populations such as Japanese and Chinese in East Asia could be detected by analyzing more than 100 tetranucleotide repeat autosomal STR markers of which mutation rates were almost equal. Less

Report

(3 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • Research Products

    (18 results)

All 2007 2006 2005

All Journal Article (17 results) Book (1 results)

  • [Journal Article] Population data of six STR loci using hexaplex PCR amplification and typing system, "Midi-6" in four regional populations in Japan2007

    • Author(s)
      R.Uchihi
    • Journal Title

      Forensic Sci. Int. (in press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] Allele frequencies of six miniSTR loci (D20S480, D6S2439, D6S1056, D9S1118, D4S2639 and D17S1290), "Midi-6", in a Basque Country autochthonous population2007

    • Author(s)
      O.Garcia
    • Journal Title

      Forensic Sci. Int. (in press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] Population data of six STR loci using hexaplex PCR amplification and typing system, "Midi-6" in four regional populations in Japan.C2007

    • Author(s)
      Uchihi R
    • Journal Title

      Forensic ScienceInternational (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Allele frequencies of six miniSTR loci (D20S480, D6S2439, D6S1056, D9S1118, D4S2639 and D17S1290), "Midi-6", in a Basque Country autochthonous population.2007

    • Author(s)
      Garcia O
    • Journal Title

      Forensic ScienceInternational (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Phylogenetic relationship of the populations within and around Japan using 105 short tandem repeat polymorphic loci2006

    • Author(s)
      S-L. Li
    • Journal Title

      Hum. Genet. 118

      Pages: 695-707

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Allele frequency distributions at three pentanucleotide repeat STR in a Japanese population2006

    • Author(s)
      H.Ohtaki
    • Journal Title

      J. Forensic Sci. 51(1)

      Pages: 193-194

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] 新しい市販のY-STR型判定用マルチプレックスキットで観察された突然変異2006

    • Author(s)
      吉本高士
    • Journal Title

      DNA多型 14

      Pages: 234-236

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] Phylogenetic relationship of the populations within and around Japan using 105 short tandem repeat polymorphic loci2006

    • Author(s)
      Li S-L
    • Journal Title

      Human Genetics 118

      Pages: 695-707

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Allele frequency distributions at three pentanucleotide repeat STR in a Japanese population.2006

    • Author(s)
      Ohtaki H
    • Journal Title

      Journal of Forensic Sciences 51(1)

      Pages: 193-194

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Mutations observed at 17 Y-STR loci using a newly commercially released multiplex kit among Japanese father-son relationships.2006

    • Author(s)
      Yoshimoto T
    • Journal Title

      DNA Polymorphisms 14

      Pages: 234-236

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Phylogenetic relationship of the populations within and around Japan using 105 short tandem repeat polymorphic loci2006

    • Author(s)
      S-L.Li
    • Journal Title

      Hum.Genet. 118

      Pages: 695-707

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Allele frequency distributions at three pentanucleotide repeat STR in a Japanese population2006

    • Author(s)
      H.Ohtaki
    • Journal Title

      J.Forensic Sci. 51(1)

      Pages: 193-194

    • Related Report
      2005 Annual Research Report
  • [Journal Article] 新しいペンタヌクレオチドSTRマルチプレックス・タイピングシステム2005

    • Author(s)
      打樋利英子
    • Journal Title

      DNA多型 13

      Pages: 21-23

    • NAID

      10015685125

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary 2005 Annual Research Report
  • [Journal Article] 日本人で識別力の高い非コード領域のSNPsのアリール特異的PCRマルチプレックス判定法2005

    • Author(s)
      井上知加子
    • Journal Title

      DNA多型 13

      Pages: 24-26

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary 2005 Annual Research Report
  • [Journal Article] A new multiplex typing system for three pentanucleotide STR loci.2005

    • Author(s)
      Uchihi R
    • Journal Title

      DNA Polymorphisms 13

      Pages: 21-23

    • NAID

      10015685125

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] A novel quadruplex typing system by allele-specific PCR for SNPs in non-coding regions with high discriminating power in Japanese.2005

    • Author(s)
      Inoue C
    • Journal Title

      DNA Polymorphisms 13

      Pages: 24-26

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] DNA profiling-Its ability and limitations.2005

    • Author(s)
      Katsumata Y
    • Journal Title

      Nagoya University Press

      Pages: 1-305

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Book] DNA鑑定-その能力と限界-2005

    • Author(s)
      勝又 義直
    • Total Pages
      305
    • Publisher
      名古屋大学出版会
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary 2005 Annual Research Report

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Published: 2005-04-01   Modified: 2016-04-21  

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