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Comprehensive analysis of cytochrome P450 in an industrial microorganism

Research Project

Project/Area Number 17510168
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied genomics
Research InstitutionKitasato University

Principal Investigator

IKEDA Haruo  Kitasato University, Kitasato Institute for Life Sciences, Professor, 北里生命科学研究所, 教授 (90159632)

Project Period (FY) 2005 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥3,500,000 (Direct Cost: ¥3,500,000)
Fiscal Year 2006: ¥1,800,000 (Direct Cost: ¥1,800,000)
Fiscal Year 2005: ¥1,700,000 (Direct Cost: ¥1,700,000)
Keywordscytochrome P450 / industrial microorganism / Streptomyces / genome / comprehensive analysis / drug metabolism / 物質変換 / ゲノム解析 / Streptomyces avermitilis
Research Abstract

An industrial microorganism, anthelminthic antibiotic producer Streptomyces avermitilis, has many (33) kinds of genes encoded cytochrome P450 (CYP) by the genome analysis of this microorganism in 2003. In order to elucidate 33 kinds of these CYP, all genes were amplified by the PCR and their amplicons were introduced into T7-RNA promoted expression vector system in E. coli. Among of 26 of CYP genes could be expressed in E. coli and their gene products were obtained as soluble protein containing Fe-heme molecule. Out of 15 gene products expressed (SAV109, SAV412, SAV413, SAV 1308, SAV1987, SAV2061, SAV2894, SAV2999, SAV3704, SAV3882, SAV5841, SAV6249, SAV7130, SAV7186, SAV7469) have catalytic activities in the presence of ferredoxin, ferredoxin reductase, NADPH-generating system and substrate and structures of their reaction products were confirmed. From the structural elucidation of reaction products, eight CYPs catalyzed the hydroxylation at C4 position of carbazole, 4 CYPs hydroxylated the para-position of trans-stilbene and 5 CYPs hydroxylayed at omega position of fatty acids. Three CYPs, CYP154A2, CYP107L2 and CYP105D7, have the ability to catalyze the hydroxylation of many compounds. Especially, CYP105D7 could catalyze the hydroxylation of at least 8 different compounds (compactin, diclofenac, lauric acid, naringenin, tolubtamide, carbazole, milbemycin A3 and testosterone). The CYP105D6 was very similar to CYP105D7 by homology and alignment analyses. The difference between CYP105D6 and CYPIO5D7 is very interesting in the substrate specificity and structural importance in CYPs, because CYP105D6 and CYP105D7 were classified to the same family and CYP105D6 hydroxylated only the polyene-macrolide filipin.

Report

(3 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • Research Products

    (15 results)

All 2007 2006

All Journal Article (14 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Pentalenolactone biosynthesis. Molecular cloning and assignment of biochemical function to PtlF, a short-chain dehydrogenase from Streptomyces avermitilis, and identification of a new biosynthetic intermediate.2007

    • Author(s)
      Cane, D.E., You, Z., Omura, S., Ikeda, H.
    • Journal Title

      Archi. Biochem. Biophys. 459

      Pages: 233-240

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Pentalenolactone biosynthesis. Molecular cloning and assignment of biochemical function to PtlF, a short-chain dehydrogenase from Streptomyces avermitilis, and identification of a new biosynthetic intermediate.2007

    • Author(s)
      Cane, D.E., You, Z., Omura, S., Ikeda, H.
    • Journal Title

      Archi.Biochem.Biophys. 459

      Pages: 233-240

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Pentalenolactone biosynthesis. Molecular cloning and assignment of biochemical function to Pt1F, a short-chain dehydrogenase from Streptomyces avermitilis, and identification of a new biosynthetic intermediate.2007

    • Author(s)
      Cane, D.E., You, Z., Omura, S., Ikeda, H.
    • Journal Title

      Archi. Biochem. Biophys. 459

      Pages: 233-240

    • Related Report
      2006 Annual Research Report
  • [Journal Article] A gene cluster for biosynthesis of the sesqui-terpenoid antibiotic pentalenolactone in Streptomyces avermitilis2006

    • Author(s)
      Tetzlaff, CN., You, Z., Cane, DE., Takamatsu, S., Omura, S., Ikeda, H
    • Journal Title

      Biochemistry 45

      Pages: 6179-6186

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] Pentalenolactone Biosynthesis; Moleclar cloning and assignment of biochemical function to PtlH, a non-heme iron dioxygenase of Streptomyces avermitilis2006

    • Author(s)
      You, Z., Omura, S., Ikeda, H., Cane, DE
    • Journal Title

      J. Am. Chem. Soc. 128

      Pages: 6566-6567

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Geosmin Biosynthesis in Streptomyces avermitilis2006

    • Author(s)
      Cane, DE., He, X., Kobayashi, S., Omura, S., Ikeda, H.
    • Journal Title

      J. Antibiot. 59

      Pages: 471-479

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Pentalenolactone Biosynthesis. Molecular Cloning and Assignment of Biochemical Function to PtlI, a Cytochrome P450 of Streptomyces avermitilis.2006

    • Author(s)
      Quaderer, R., Omura, S., Ikeda, H., Cane, D.E.
    • Journal Title

      J. Am. Chem. Soc. 128

      Pages: 13036-13037

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] A gene cluster for biosynthesis of the sesqui-terpenoid antibiotic pentalenolactone in Streptomyces avermitilis2006

    • Author(s)
      Tetzlaff, CN., You, Z., Cane, DE., Takamatsu, S, Omura, S., Ikeda, H.
    • Journal Title

      Biochemistry 45

      Pages: 6566-6567

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Pentalenolactone Biosynthesis; Molecular cloning and assignment of biochemical function to PtlH, a non-heme iron dioxygenase of Streptomyces avermitilis2006

    • Author(s)
      You, Z., Omura, S., Ikeda, H., Cane, DE.
    • Journal Title

      J.Am.Chem.Soc. 128

      Pages: 6566-6567

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Geosmin Biosynthesis in Streptomyces avermitilis2006

    • Author(s)
      Cane, DE., He, X., Kobayashi, S., Omura, S., Ikeda, H.
    • Journal Title

      J.Antibiot. 59

      Pages: 471-479

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Pentalenolactone Biosynthesis. Molecular Cloning and Assignment of Biochemical Function to PtII, a Cytochrome P450 of Streptomyces avermitilis2006

    • Author(s)
      Quaderer, R., Omura, S., Ikeda, H., Cane, D.E.
    • Journal Title

      J.Am.Chem.Soc. 128

      Pages: 13036-13037

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Pentalenolactone Biosynthesis; Moleclar cloning and assignment of biochemical function to Pt1H, a non-heme iron dioxygenase of Streptomyces avermitilis2006

    • Author(s)
      You, Z., Omura, S., Ikeda, H., Cane, DE
    • Journal Title

      J. Am. Chem. Soc. 128

      Pages: 6566-6567

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Geosmin Biosynthesis in Streptomyces avermitilis.2006

    • Author(s)
      Cane, DE., He, X., Kobayashi, S., Omura, S., Ikeda, H.
    • Journal Title

      J. Antibiot. 59

      Pages: 471-479

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Pentalenolactone Biosynthesis. Molecular Cloning and Assignment of Biochemical Function to Pt1I, a Cytochrome P450 of Streptomyces avermitilis.2006

    • Author(s)
      Quaderer, R., Omura, S., Ikeda, H., Cane, D.E.
    • Journal Title

      J Am. Chem. Soc. 128

      Pages: 13036-13037

    • Related Report
      2006 Annual Research Report
  • [Patent(Industrial Property Rights)] 生物学的変換方法によるアルカンジオールの製造方法2006

    • Inventor(s)
      池田 治生 他6名
    • Industrial Property Rights Holder
      北里研究所, メルシャン株式会社
    • Filing Date
      2006-02-07
    • Related Report
      2005 Annual Research Report

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Published: 2005-04-01   Modified: 2016-04-21  

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