• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Development of the Intelligent Nucleic Acids having Multi Regulation Activity Triggered by Hybridization

Research Project

Project/Area Number 17550158
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Chemistry related to living body
Research InstitutionTohoku University (2006)
Kyushu University (2005)

Principal Investigator

NAGATSUGI Fumi  Tohoku University, Institute of Multidiciplinary Research for Advanced Materials, Professor, 多元物質科学研究所, 教授 (90208025)

Project Period (FY) 2005 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥3,600,000 (Direct Cost: ¥3,600,000)
Fiscal Year 2006: ¥1,700,000 (Direct Cost: ¥1,700,000)
Fiscal Year 2005: ¥1,900,000 (Direct Cost: ¥1,900,000)
KeywordsCross-Link / Hybridization / Drug releasing system / Fluorescence / Gene / FRET / Detection in Cells / 2-amino-6-vinyl purine / ハイブリッド形成 / マスキング剤
Research Abstract

We have already established the strategy of synchronous activation by hybridization, in which the highly reactive cross-linking agent, 2-amino-6-vinylpurine nucleoside analog, can be generated from its stable precursors, the phenylsulfide derivatives, by a hybridization-promoted activation process with selectivity to cytosine. In this project, this in situ activation system was applied to method for the drug releasing system triggered by hybridization with the target sequence.
For the proof of our concept, we first designed the strategies for visualization of the releasing system in cells.
In 2004, we investigated that the fluorescent group was connected to 2-amino vinylpurine with sulfide bond and the release of sulfide group could be detected by increasing fluorescence but it did not work.
In 2005, we planed to exploit a fluorescence resonance energy transfer (FRET). We synthesized the 5'-fluorecein-labeled ODN containing 2-amino-6-vinylpurine at the position of 3 bases away from 5' end and 4-dimethylamino-azobenzene-thiol as a quencher have reacted to vinyl group. The fluorescence of double-labeled ODN probe decreased relative to the 5'-fluorecein single labeled ODN. When this probe hybridizes to exact complement and forms duplex DNA, the fluorescence increases gradually to be accompanied by release of the thiol group. These results have suggested that double-labeled ODN probe is capable of releasing the molecule triggered by hybridization in a highly sequence specific manner. The drug releasing system can be visualized by using our system in living cell.

Report

(3 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • Research Products

    (34 results)

All 2006 2005

All Journal Article (32 results) Book (2 results)

  • [Journal Article] Application of unnatural oligonucleotides to chemical modification of gene expression2006

    • Author(s)
      S.Sasaki
    • Journal Title

      Current Opin : Chem. Biol 10

      Pages: 615-621

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Novel drug releasing system triggered by hybridization with target sequence2006

    • Author(s)
      S.Nakayama
    • Journal Title

      Nucleic Acids Symp. Ser. 50

      Pages: 143-144

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] Intracellular Ability of an Inducible Alkylation System to Exhibit Antisense Effects with Greater Potency and Selectivity2006

    • Author(s)
      Ali M. M.
    • Journal Title

      Angew. Chem. Int. Ed. 45

      Pages: 3136-3140

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Effects of Halogenated WNA Derivatives on Sequence Dependency for Expansion of Recognition Sequences in the Non-Natural Type Triplexes2006

    • Author(s)
      Y.Taniguchi
    • Journal Title

      J. Org. Chem 71

      Pages: 2115-2122

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Application of 2-Amino-6-Vinylpurine as an Efficient Agent for Conjugation of Oligonucleotides2006

    • Author(s)
      Ali M. M
    • Journal Title

      Nucleosides, Nucleotides, and Nucleic Acids 25

      Pages: 59-69

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Application of unnatural oligonucleotides to chemical modification of gene expression2006

    • Author(s)
      S.Sasaki
    • Journal Title

      Current Opin. Chem. Biol 10

      Pages: 615-621

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Novel drug releasing system triggered by hybridization with target sequence2006

    • Author(s)
      S.Nakayama
    • Journal Title

      Nucleic Acids Symp. Ser 50

      Pages: 143-144

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Effects of Halogenated WNA Derivatives on Sequence Dependency for Expansion of Recognition Sequences in the Non-Natural Type Trinlexes2006

    • Author(s)
      Y.Taniguchi
    • Journal Title

      J. Org. Chem 71

      Pages: 2115-2122

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Application of 2-Amino-6-Vinylpurine as an Efficient Agent for Conjugation of Oligonucleotides2006

    • Author(s)
      Ali M. M.
    • Journal Title

      Nucleosides, Nucleotides, and Nucleic Acids 25

      Pages: 59-69

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Application of unnatural oligonucleotides to chemical modification of gene expression2006

    • Author(s)
      Sasaki S.
    • Journal Title

      Current Opin. Chem. Biol 10

      Pages: 615-621

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Intracellular Ability of an Inducible Alkylation System to Exhibit Antisense Effects with Greater Potency and Selectivity2006

    • Author(s)
      AliM.M.
    • Journal Title

      Angew. Chem. Int. Ed., 45

      Pages: 3136-3140

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Effects of Halogenated WNA Derivatives on Sequence Dependency for Expansion of Recognition Sequences in the Non-Natural Type Triplexes2006

    • Author(s)
      Taniguchi Y.
    • Journal Title

      J. Org. Chem 71

      Pages: 2115-2122

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Application of 2-Amino-6-vinylpurine as an Efficient Agent for Conjugation of 0ligonucleotides2006

    • Author(s)
      AliM.M
    • Journal Title

      Nucleosides, Nucleotides, and Nucleic Acids 25

      Pages: 59-69

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Intracellular Ability of an Inducible Alkylation System to Exhibit Antisense Effects with Greater Potency and Selectivity2006

    • Author(s)
      Ali M.M., Oishi M., Nagatsugi F., Mori K., Nagasaki Y., Kataoka K., Sasaki S
    • Journal Title

      Angew.Chem.Int.Ed (In press)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Effects of Halogenated WNA Derivatives on Sequence Dependency for Expansion of Recognition Sequences in the Non-Natural Type Triplexes2006

    • Author(s)
      Taniguchi Y., Nakamura A., Senko Y., Nagatsugi F., Sasaki S
    • Journal Title

      J.Org.Chem (In press)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Application of 2-Amino-6-Vinylpurine as an Efficient Agent for Conjugation of Oligonucleotides2006

    • Author(s)
      Ali M.M., Nagatsugi F., Sasaki S., Nakahara R., Maeda M
    • Journal Title

      Nucleosides, Nucleotides, and Nucleic Acids 25

      Pages: 159-169

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Design of highly efficient and selective transfer reaction of nitrosyl group to dC and d^mC resulting in specific deamination2005

    • Author(s)
      Ali M. M.
    • Journal Title

      Nucleosides Nucleotides, and Nucleic Acid 24

      Pages: 721-724

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Expansion of triplex recognition codes by the use of novel bicyclic nucleoside derivatives (WNA)2005

    • Author(s)
      Y.Taniguchi
    • Journal Title

      Nucleosides, Nucleotides, and Nucleic Acids 24

      Pages: 823-827

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Supramolecular assemblies for the cytoplasmic delivery of antisense oligodeoxynucleotide : Polylon complex (PIC) micelles based on poly(ethylene glycol)-SS-oligodeoxynucleotide conjugate2005

    • Author(s)
      M.Oishi
    • Journal Title

      Biomacromolecules 6

      Pages: 2449-2454

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Smart Polyion Complex Micelles for Targeted Intracellular Delivery of PEGylated Antisense Oligonucleotide with Acid-Labile Linkage2005

    • Author(s)
      M.Oishi
    • Journal Title

      ChemBioChem 6

      Pages: 718-725

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Substituent Effects on the In situ Activation of the Double Activated Cross-linking Reaction2005

    • Author(s)
      F.Nagatsugi
    • Journal Title

      Nucleic Acids Symp. Ser 49

      Pages: 175-176

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Development of efficient packaging method of oligodeoxynucleotides by a condensed nano particle in lipid envelope structure2005

    • Author(s)
      Y.Yamada
    • Journal Title

      Biol. Pharm. Bull 28

      Pages: 1939-1942

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Hybridization-Promoted and Cytidine-Selective Activation for Cross-Linking with the Use of 2-Amino-6-Vinylpurine Derivatives2005

    • Author(s)
      T.Kawasaki
    • Journal Title

      J. Org. Chem 70

      Pages: 14-23

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Design of highly efficient and selective transfer reaction of nitrosyl group to dC and d^mC resulting in specific deamination2005

    • Author(s)
      Ali M. M.
    • Journal Title

      Nucleosides, Nucleotides, and Nucleic Acids 24

      Pages: 721-724

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Hybridization-Promoted and Cytidine-Selective Activation for Cross-Linking with the Use of 2-Amino-6-Vinylpurine Derivatives2005

    • Author(s)
      T Kawasak
    • Journal Title

      J. Org. Chem 70

      Pages: 14-23

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Design of highly efficient and selective transfer reaction of nitrosyl group to dC and d^mC resulting in specific deamination,2005

    • Author(s)
      Md.Monsur Ali, Nagatsugi, F., Nakayama, S., Md.Rowshon Alam, Kawasaki, T., Sasaki, S
    • Journal Title

      Nucleosides Nucleotides Nucleic Acid 24

      Pages: 721-724

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Expansion of triplex recognition codes by the use of novel bicyclic nucleoside derivatives (WNA)2005

    • Author(s)
      Taniguchi, Y., Nakamura, A., Senko, Y., Kodama, K., Nagatsugi, F., Sasaki, S
    • Journal Title

      Nucleosides Nucleotides Nucleic Acids 24

      Pages: 823-827

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Supramolecular assemblies for the cytoplasmic delivery of antisense oligodeoxynucleotide : Polylon complex (PIC) micelles based on poly(ethylene glycol)-SS-oligodeoxynucleotide conjugate2005

    • Author(s)
      M.Oishi, T.Hayama, Y.Akiyama, S.Takae, A.Harada, Y.Yamasaki, F.Nagatsugi, S.Sasaki, Y.Nagasaki, K.Kataoka
    • Journal Title

      Biomacromolecules 6

      Pages: 2449-2454

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Smart Polyion Complex Micelles for Targeted Intracellular Delivery of PEGylated Antisense Oligonucleotide with Acid-Labile Linkage,2005

    • Author(s)
      Oishi, M., F.Nagatsugi, Sasaki, S., Nagasaki, Y., Kataoka, K
    • Journal Title

      ChemBioChem 6

      Pages: 718-725

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Substituent Effects on the In situ Activation of the Double Activated Cross-linking Reaction2005

    • Author(s)
      F.Nagatsugi, _S.Mori, Md.Monsur Ali, Y.Ogata, S.Sasaki
    • Journal Title

      Nucleic Acids Symp.Ser 49

      Pages: 175-176

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Development of efficient packaging method of oligodeoxynucleotides by a condensed nano particle in lipid envelope structur2005

    • Author(s)
      Y.Yamada, K.Kogure, Y.Nakamura, K.Inoue, H.Akita, F.Nagatsugi, S.Sasaki, T.Suhara, H.Harashima
    • Journal Title

      Biol.Pharm.Bull 28

      Pages: 1939-1942

    • NAID

      110003666368

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Hybridization-Promoted and Cytidine-Selective Activation for Cross-Linking with the Use of 2-Amino-6-Vinylpurine Derivatives2005

    • Author(s)
      Kawasaki, T., Nagatsugi, F., Md.Monsur Ali, Maeda, M., Sugiyama, K..Hori, K., Sasaki, S
    • Journal Title

      J.Org.Chem 70

      Pages: 14-23

    • Related Report
      2005 Annual Research Report
  • [Book] Molecular Design for Specific Recognition and Reaction in Genome-Targeting Chemistry, Frontiers in Organic Chemistry2005

    • Author(s)
      S.Sasaki
    • Total Pages
      18
    • Publisher
      Bentham Science Publisherss
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Book] Molecular Design for Specific Recognition and Reaction in Genome-Targeting Chemistry, Frontiers in Organic Chemistry2005

    • Author(s)
      S.Sasaki, F.Nagatsugi
    • Publisher
      Bentham Science Publisherss
    • Related Report
      2005 Annual Research Report

URL: 

Published: 2005-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi