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Damage of telomeric DNA by active oxygen radicals

Research Project

Project/Area Number 17570092
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionKyoto Institute of Technology

Principal Investigator

KANAORI Kenji  Kyoto Institute of Technology, Graduate School of Science and Technology, Associate Professor, 工芸科学研究科, 助教授 (30273543)

Project Period (FY) 2005 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥3,400,000 (Direct Cost: ¥3,400,000)
Fiscal Year 2006: ¥1,200,000 (Direct Cost: ¥1,200,000)
Fiscal Year 2005: ¥2,200,000 (Direct Cost: ¥2,200,000)
Keywordsactive oxygen / telomere / DNA lesion / Electron spin resonance / radical / NMR
Research Abstract

We have studied DNA damages of telomeric DNA by the active-oxygen. G-quartet structure which is the structure of the telomere deoxyribonucleic acid was reviewed in detail about a wide range of alkali metal ions, because the structural change occurred with the difference in the alkali metal ion and the radical-reaction between DNA and radicals was changed. Based on the structural information, the damages of the nucleic acid were observed in the direct measurement, and we have observed the time change. At present, those are being clarified by the mass analysis and NMR. In the direct measurement of the reaction between DNA and radicals, however, our previous systems could not be applied because of the low concentration and fast decay of the radicals. Therefore, we examined the mixer and pass of the stopped-flow instrument, and made the new system. Moreover, in the detecting means, we have improved capillary flow-cell and used it. It succeeded in incorporating an irradiation system into stopped-flow-ESR measurement system by the improvement and making active-oxygen radical species react to the occurrence and the biological-sample efficiently. It established a way of detecting nucleic acid radical. Also, some spin-trap reagents were obtained by the chemical synthesis formed them by the recrystallization. They made us selectively detect the radicals. Currently, we applied this system to the research of telomeric DNA damages by the active-oxygen of the amino acid. At present, the structure singularity of the radical-reaction of the telomere deoxyribonucleic acid is clarifying the mechanism of the damage of the deoxyribonucleic acid all together with the result of the clarifying and NMR.

Report

(3 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • Research Products

    (8 results)

All 2006 2005

All Journal Article (8 results)

  • [Journal Article] The roles of conserved amino acids on substrate binding and conformational integurity of C1pB N-terminal domain2006

    • Author(s)
      Tanaka, N.
    • Journal Title

      Biochemistry 45

      Pages: 8556-8561

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] The roles of conserved amino acids on substrate binding and conformational integurity of ClpB N-terminal domain2006

    • Author(s)
      Tanaka, N., Tani, Y., Tada, T., Lee, Y.-F., Kanaori, K., Kunugi, S.
    • Journal Title

      Biochemistry 45

      Pages: 8556-8561

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] The roles of conserved amino acids on substrate binding and conformational integrity of ClpB N-terminal domain2006

    • Author(s)
      Tanaka, N.
    • Journal Title

      Biochemistry 45

      Pages: 8556-8561

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Pyrene is highly emissive when attached to the RNA duplex but not to the DNA duplex : the structural basis of this difference2005

    • Author(s)
      Nakamura, M.
    • Journal Title

      Nucleic Acid Res. 33

      Pages: 5887-5895

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary 2005 Annual Research Report
  • [Journal Article] Interaction of gymnemic acid with cyclodextrins analyzed by isothermal titration calorimetry, NMR and dynamic light scattering2005

    • Author(s)
      Izutani, Y.
    • Journal Title

      FEBS 272

      Pages: 6154-6160

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary 2005 Annual Research Report
  • [Journal Article] Pyrene is highly emissive when attached to the RNA duplex but not to the DNA duplex : the structural basis of this difference2005

    • Author(s)
      Nakamura, M., Fukunaga, Y., Sasa, K., Ohtoshi, Y., Kanaori, K., Hayashi, H., Nakano, H., Yamana, K.
    • Journal Title

      Nucleic Acids Res. 33

      Pages: 5887-5895

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Interaction of gymnemic acid with cyclodextrins analyzed by isothermal titration calorimetry, NMR and dynamic light scattering2005

    • Author(s)
      Izutani, Y., Kanaori, K., Imoto, T., Oda, M.
    • Journal Title

      FEBS 272

      Pages: 6154-6160

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Relationship between temporary inhibition and structure of disulfide-linkage analogs of marinostatin, a natural ester-linked protease inhibitor2005

    • Author(s)
      Taniguchi, M.
    • Journal Title

      J.peptide Res. 66

      Pages: 49-58

    • Related Report
      2005 Annual Research Report

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Published: 2005-04-01   Modified: 2016-04-21  

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