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Structural dynamics and functions of proteins involved in homologous recombination

Research Project

Project/Area Number 17570097
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionWaseda University

Principal Investigator

KURUMIZAKA Hitoshi  Faculty of Science and Engineering, Associate, Professor, 理工学術院, 助教授 (80300870)

Project Period (FY) 2005 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥3,600,000 (Direct Cost: ¥3,600,000)
Fiscal Year 2006: ¥1,400,000 (Direct Cost: ¥1,400,000)
Fiscal Year 2005: ¥2,200,000 (Direct Cost: ¥2,200,000)
Keywordshomologous recombination / double strand break repair / genetic recombination / Rad51 / Dmc1 / meiosis / RecA / ATPase / タンパク質と酵素 / 核酸 / 遺伝子及び染色体 / 構造生物学 / X線結晶解析 / 生体高分子構造・機能 / 遺伝情報複製・再編 / 染色体構築・機能・分配
Research Abstract

Chromosomal DNA is exposed to various DNA-damaging agents and sustains damage that induces genomic instability. A double-strand break (DSB) is caused by ionizing radiation, crosslinking reagents, oxidative stress, and DNA replication failure. If the DSB is left unrepaired, then cell death occurs. Homologous recombination is one of the major DSB repair pathways. This repair pathway is essentially error-free, since a homologous region of the undamaged sister chromatid is used as the template for repair. In contrast to the mitotic DSB repair pathway, meiotic cell division involves homologous recombination between homologous chromosomes, but not between sister chromatids. This preferential recombination between homologous chromosomes is initiated by the formation of a programmed double strand break (DSB), and ensures correct chromosomal segregation at meiosis I through the formation of chiasmata, which physically connect homologous chromosomes. Thus, homologous recombination is important to maintain the integrity of the chromosome in both mitotic and meiotic cells.
In homologous recombination, a single-stranded DNA (ssDNA) tail, produced at the DSB site, is incorporated into a nucleoprotein complex called the presynaptic filament. This presynaptic filament catalyzes homologous pairing and strand exchange with an intact homologous region of the double-stranded DNA (dsDNA) molecule. The bacterial RecA protein is known to form helical presynaptic filaments and to play central roles in homologous recombination. In eukaryotes, two homologs of RecA, the Rad51 and Dmcl proteins, which are conserved from yeast to human, are assumed to fulfill this role.
We have determined the crystal structure of the human Dmcl protein as an octameric ring form. Then, we performed the structure-based mutation analyses of the Rad51 and Dmcl proteins, and identified residues that function in DNA-binding and octameric ring formation.

Report

(3 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • Research Products

    (17 results)

All 2007 2006 2005

All Journal Article (17 results)

  • [Journal Article] Genetic variance modifies apoptosis susceptibility in mature oocytes via alterations in DNA repair capacity and mitochondrial ultrastructure2007

    • Author(s)
      Perez GI, Acton BM, Jurisicova A, Perkins GA, White A, Brown J, Trbovich AM, Kim MR, Fissore R, Xu J, Ahmady A, D'Estaing SG, Li H, Kagawa W, Kurumizaka H, Yokoyama S, Okada H, Mak TW, Ellisman MH, Casper RF, Tilly JL
    • Journal Title

      Cell Death Differ. 14(3)

      Pages: 524-533

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] HIV-1 Vpr induces ATM-dependent cellular signal with enhanced homologous recombination2007

    • Author(s)
      Nakai-Murakami C, Shimura M, Kinomoto M, Takizawa Y, Tokunaga K, Taguchi T, Hoshino S, Miyagawa K, Sata T, Kurumizaka H, Yuo A, Ishizaka Y
    • Journal Title

      Oncogene 26(4)

      Pages: 477-486

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Genetic variance modifies apoptosis susceptibility in mature oocytes via alterations in DNA repair capacity and mitochondrial ultrastructure.2007

    • Author(s)
      Perez GI, Acton BM, Jurisicova A, Perkins GA, White A, Brown J, Trbovich AM, Kim MR, Fissore R, Xu J, Ahmady A, D'Estaing SG, Li H, Kagawa W, Kurumizaka H, Yokoyama S, Okada H, Mak TW, Ellisman MH, Casper RF, Tilly JL.
    • Journal Title

      Cell Death Differ. 14(3)

      Pages: 524-533

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] HIV-1 Vpr induces ATM-dependent cellular signal with enhanced homologous recombination.2007

    • Author(s)
      Nakai-Murakami C, Shimura M, Kinomoto M, Takizawa Y, Tokunaga K, Taguchi T, Hoshino S, Miyagawa K, Sata T, Kurumizaka H, Yuo A, Ishizaka Y.
    • Journal Title

      Oncogene 26(4)

      Pages: 477-486

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Genetic variance modifies apopotosis susceptibility in mature oocytes via alterations in DNA repair capacity and mitochondrial ultrastructure.2007

    • Author(s)
      Perez GI et al.
    • Journal Title

      Cell Death Differ. 14(3)

      Pages: 524-533

    • Related Report
      2006 Annual Research Report
  • [Journal Article] HIV-1 Vpr induces ATM-dependent cellular signal with enhanced homologous recombination.2007

    • Author(s)
      Nakai-Murakami C. et al.
    • Journal Title

      Oncogene 26(4)

      Pages: 477-486

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Stimulation of Dmcl-mediated DNA strand exchange by the human Rad54B protein2006

    • Author(s)
      Sarai N, Kagawa W, Kinebuchi T, Kagawa A, Tanaka K, Miyagawa K, Ikawa S, Shibata T, Kurumizaka H, Yokoyama S
    • Journal Title

      Nucleic Acids Res. 34(16)

      Pages: 4429-4437

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Roles of the human Rad51 L1 and L2 loops in DNA binding2006

    • Author(s)
      Matsuo Y, Sakane I, Takizawa Y, Takahashi M, Kurumizaka H
    • Journal Title

      FEBS Journal 273(14)

      Pages: 3148-3159

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] The DnaA homolog of the hyperthermophilic eubacterium Thermotoga maritima forms an open complex with a minimal 149-bp origin region in an ATP-dependent manner2006

    • Author(s)
      Ozaki S, Fujimitsu K, Kurumizaka H, Katayama T
    • Journal Title

      Genes Cells 11(4)

      Pages: 425-438

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Stimulation of Dmc1-mediated DNA strand exchange by the human Rad54B protein.2006

    • Author(s)
      Sarai N, Kagawa W, Kinebuchi T, Kagawa A, Tanaka K, Miyagawa K, Ikawa S, Shibata T, Kurumizaka H, Yokoyama S.
    • Journal Title

      Nucleic Acids Res. 34(16)

      Pages: 4429-4437

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Roles of the human Rad51 L1 and L2 loops in DNA binding.2006

    • Author(s)
      Matsuo Y, Sakane I, Takizawa Y, Takahashi M, Kurumizaka H.
    • Journal Title

      FEBS J. 273(14)

      Pages: 3148-3159

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] The DnaA homolog of the hyperthermophilic eubacterium Thermotoga maritima forms an open complex with a minimal 149-bp origin region in an ATP-dependent manner.2006

    • Author(s)
      Ozaki S, Fujimitsu K, Kurumizaka H, Katayama T.
    • Journal Title

      Genes Cells 11(4)

      Pages: 425-438

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Stimulation of Dmc1-mediated DNA strand exchange by the human Rad54B protein.2006

    • Author(s)
      Srai N.et al.
    • Journal Title

      Nucleic Acids Research 34(16)

      Pages: 4429-4437

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Roles of the human Rad51L1 loops in DNA binding.2006

    • Author(s)
      Matsuo Y, Sakane I, Takizawa Y, Takahashi M, Kurumizaka H
    • Journal Title

      FEBS Journal 273(14)

      Pages: 3148-3159

    • Related Report
      2006 Annual Research Report
  • [Journal Article] forms an open complex with a minimal 149-bp origin region in an ATP-dependent manner.2006

    • Author(s)
      Ozaki S, Fujimitsu K, Kurumizaka H, Katayama T
    • Journal Title

      Genes to Cell 11(4)

      Pages: 425-438

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Structural and biochemical analyses of human centromere proteins A and B.2006

    • Author(s)
      Tanaka Y, Kurumizaka H
    • Journal Title

      DNA Structure,Chromatin and Gene Expression (eds.R.Kiyama and M.Shimizu)

      Pages: 207-218

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Role of the N-terminal domain of the human DMC 1 protein in octamer formation and DNA binding2005

    • Author(s)
      Kinebuchi, T., Kagawa, W., Kurumizaka, H., Yokoyama, S.
    • Journal Title

      Journal of Biological Chemistry 280(31)

      Pages: 28382-28387

    • Related Report
      2005 Annual Research Report

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Published: 2005-04-01   Modified: 2016-04-21  

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