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Reconstruction of circadian gene network by molecular LEGO

Research Project

Project/Area Number 17570134
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionKYUSHU UNIVERCITY

Principal Investigator

MATSUMOTO Akira  Kyushu University, Center for Research and Advancement in Higher Education, 高等教育開発推進センター, 助手 (40229539)

Project Period (FY) 2005 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥3,600,000 (Direct Cost: ¥3,600,000)
Fiscal Year 2006: ¥900,000 (Direct Cost: ¥900,000)
Fiscal Year 2005: ¥2,700,000 (Direct Cost: ¥2,700,000)
Keywordscircadian rhythm / culture cell / Drosophila / reconstruction / gene network
Research Abstract

Gene-protein networks composed of artificial chimeric genes were reconstructed by "molecular LEGO" method in Drosophila S2 cell. A double feedback loop mimicking Drosophila circadian system showed a relatively stable oscillation with 4-6 hrs in period. Parameters which significantly influences to stability and period of the oscillation were analyzed with the altered components having mutation in each domain. The half life of mRNA of a negative loop component, hereafter called as a negative factor, drastically affects to a stability of oscillation. When the half-life becomes shorter, the rhythmicity becomes more stable. However, any significant change in period was not found by changing the half-life of mRNA in a negative factor. The protein degradation of a negative factor in the range from 2 to 16 hrs in its half-life had no effect on either stability or period of the oscillation. When the protein half-life of a negative factor was similar to that of a positive one, the oscillation becomes stable. The nuclear localization of negative factor was found as an important parameter to generate a periodicity because its efficiency changed the period of the reconstructing rhythm. Moreover, the less efficiency of nuclear localization of a negative factor induced no rhythmicity. The ratio between negative and positive factor is also important. A given period lengthened when the ratio is 1:5 or 5:1 as compared to when they were even. Surprisingly, the reconstructing oscillation showed a temperature-compensation in its period in the range between 20 and 25 C.

Report

(3 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • Research Products

    (8 results)

All 2007 2006 2005

All Journal Article (8 results)

  • [Journal Article] A functional genomics strategy reveals clockwork orange as a transcriptional in Drosophila circadian clock.2007

    • Author(s)
      Matsumoto A. et al.
    • Journal Title

      Gene and Development 21(in press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] A functional genomics strategy reveals clockwork orange as a transcriptional in Drosophila circadian clock.2007

    • Author(s)
      Matsumoto A. et al.
    • Journal Title

      Genes and Development 21(in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Genome-wide screenings for circadian clock genes in Drosophila.2006

    • Author(s)
      Akira Matsumoto
    • Journal Title

      Sleep and Biological Rhythms 4

      Pages: 248-254

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Genome-wide screening for circadian clock genes in Drosophila.2006

    • Author(s)
      Matsumoto A.
    • Journal Title

      Sleep Biological Rhythms 4

      Pages: 248-254

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Genome-wide screenings for circadian clock genes in Drosophils.2006

    • Author(s)
      Akira Matsumoto
    • Journal Title

      Sleep and Biological Rhythms 4

      Pages: 248-254

    • Related Report
      2006 Annual Research Report
  • [Journal Article] An endoderm specific GATA factor gene, dGATAe, is required for the terminal differentiation of the Drosophila endoderm.2005

    • Author(s)
      Okumura T., Matsumoto A.et al.
    • Journal Title

      Developmental Biology 278

      Pages: 576-586

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] An endoderm specific GATA factor gene, dGATAe, is required for the terminal differentiation of the Drosophila endoderm.2005

    • Author(s)
      Okumura et al.
    • Journal Title

      Developmental Biology 278

      Pages: 576-586

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Temperature cycles drive Drosophila circadian oscillation in constant light that otherwise induces behavioural arrhythmicity.2005

    • Author(s)
      Yoshii et al.
    • Journal Title

      Europian Journal of Neuroscience 22

      Pages: 1176-1184

    • Related Report
      2005 Annual Research Report

URL: 

Published: 2005-04-01   Modified: 2016-04-21  

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