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Studies on the gene network responsible for the specific gene expression during development

Research Project

Project/Area Number 17570179
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Developmental biology
Research InstitutionHiroshima University

Principal Investigator

YAMAMOTO Takashi  Hiroshima University, Graduate School of Science, Professor (90244102)

Co-Investigator(Kenkyū-buntansha) SHIBATA Tatsuo  Hiroshima University, Graduate School of Science, Associate Professor (10359888)
SAKAMOTO Naoaki  Hiroshima University, Graduate School of Science, Associate Professor (00332338)
Project Period (FY) 2005 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥3,740,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥240,000)
Fiscal Year 2007: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2006: ¥1,000,000 (Direct Cost: ¥1,000,000)
Fiscal Year 2005: ¥1,700,000 (Direct Cost: ¥1,700,000)
Keywordsgene / development / regulation of expression / genome / 発生・分化 / 転写調節因子
Research Abstract

The purpose of this study is to analyze the regulatory mechanisms of spatio-temporal specific gene expression during development. We focus on the T-brain homolog (HpTb) of sea urchin, Hemicentrotus pulcherrimus, which expresses specifically in micromere descendants and is involved in the gastrulation and skeletogenesis. The following results were obtained from series of experiments.
(1) We isolated approximately 7 kb genomic region of HpTb gene and showed that GFP expression driven by this region exhibits the spatio-temporal pattern corresponding substantially to that of endogenous HpTb expression.
(2)T o address the cis-regulatory region within the 7 kb region of HpTb gene, the nucleotide sequence of the 7 kb region was compared with the corresponding region of genes encoding the T-brain ortholog of other sea urchin species, Strongylocentrotus purpuratus and Lytechinus variegatus by Family RelationsII software. Four conserved regions (C1, C2, C3 and C4) were found besides exons. The Cl region locates in the 5' franking region and C2 to C4 regions in the 1st intron. By computational search, Hairy family and Snail family consensus sequences were found in C1 and C2 region, respectively
(3) Deletion of interspecifically conserved C2 and C4 regions resulted in an increase of ectopic expression. Mutations in Hairy family and Snail family consensus sequences also increased ectopic expression, suggesting that these elements are involved in repression of HpTb gene expression in ectoderm and endoderm.
(4) We demonstrated that C4 region functions as enhancer, and that three Ets family consensus sequences are involved in this activity but not in spatial regulation.
From these results, we concluded that the specific expression of HpTb gene is regulated by multiple cis-regulatory elements

Report

(4 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • 2005 Annual Research Report
  • Research Products

    (57 results)

All 2008 2007 2006 2005 Other

All Journal Article (19 results) (of which Peer Reviewed: 9 results) Presentation (35 results) Book (2 results) Remarks (1 results)

  • [Journal Article] Analysis of cis-regulatory elements controlling spatio-temporal expression of T-brain gene in sea urchin, Hemicentrotus pulcherrimus.2008

    • Author(s)
      Ochiai H.
    • Journal Title

      Mechanisms of Development 125・1-2

      Pages: 2-17

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] RSF Governs Silent Chromatin Formation via Histone H2Av Replacement.2008

    • Author(s)
      Hanai K.
    • Journal Title

      PLoS genetics 4・2

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Analysis of cis-regulatory elements controlling spatio-temporal expression of T-brain gene in sea urchin, Hemicentrotus pulcherrimus2008

    • Author(s)
      Ochiai, H
    • Journal Title

      Mechanisms of Development 125(1-2)

      Pages: 2-17

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] RSF Governs Silent Chromatin Formation via Histone H2Av Replacement2008

    • Author(s)
      Hanai, K
    • Journal Title

      PLoS genetics 4(2)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Analysis of cis-regulatory elements controlling spatio-temporal expression of T-brain gene in sea urchin, Hemicentrotus pulcherrimus.2008

    • Author(s)
      Ochiai H., et. al.
    • Journal Title

      Mechanisms of Development 125・1-2

      Pages: 2-17

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] RSF Governs Silent Chromatin Formation via Histone H2Av Replacement.2008

    • Author(s)
      Hanai K., et. al.
    • Journal Title

      PLoS genetics 4・2

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] DNA variations within the sea urchin Otx enhancer.2007

    • Author(s)
      Yamamoto T.
    • Journal Title

      FEBS letters 581・27

      Pages: 5234-5240

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] DNA variations within the sea urchin Otx enhancer2007

    • Author(s)
      Yamamoto, T
    • Journal Title

      FEBS Letters 581(27)

      Pages: 5234-5240

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] DNA variations within the sea urchin Otx enhancer.2007

    • Author(s)
      Yamamoto T., et. al.
    • Journal Title

      FEBS letters 581・27

      Pages: 5234-5240

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Developmental expression of HpNanos, the Hemicentrotus pulcherrimus homologue of nanos2006

    • Author(s)
      Fujii, T.
    • Journal Title

      Gene Expression Patterns 6・5

      Pages: 572-577

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Unichrom, a novel nuclear matrix protein, binds to the Ars insulator and canonical MARs.2006

    • Author(s)
      Tagashira, H.
    • Journal Title

      Zoological Science 23・1

      Pages: 9-21

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Developmental expression of HpNanos, the Hemicentrotus pulcherrimus homologue of nanos2006

    • Author(s)
      Fujii, T
    • Journal Title

      Gene Expression Patterns 6(5)

      Pages: 572-577

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Unichrom, a novel nuclear matrix protein, binds to the Ars insulator and canonical MARs2006

    • Author(s)
      Tagashira, H
    • Journal Title

      Zoological Science 23(1)

      Pages: 9-21

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Developmental expression of HpNanos, the Hemicentrotus pulcherrimus homologue of nanos2006

    • Author(s)
      Fujii T. et al.
    • Journal Title

      Gene Expression Patterns 6・5

      Pages: 572-577

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Unichrom, a novel nuclear matrix protein, binds to the ars insulator and canonical Mars.2006

    • Author(s)
      Tagashira H.et al.
    • Journal Title

      Zoological Science 23・1

      Pages: 9-21

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Developmental expression of HpNanos, the Hemicentrotus pulcherrimus homologue of nanos.2006

    • Author(s)
      Fujii T.et al.
    • Journal Title

      Gene expression patterns (in press)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Organ-specific and age-dependent expression of insulin-like growth factor-I(IGF-I)mRNA variants: IGF-IA and IB mRNAs in the mouse2005

    • Author(s)
      Ohtsuki, T.
    • Journal Title

      Zoological Science 22・9

      Pages: 1011-1021

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Organ-specific and age-dependent expression of insulin-like growth factor-I (IGF-I) mRNA variants : IGF-IA and IB mRNAs in the mouse2005

    • Author(s)
      Ohtsuki, T
    • Journal Title

      Zoological Science 22(9)

      Pages: 1011-1021

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Organ-specific and age-dependent expression of insulin-like growth factor-I (IGF-I) mRNA variants : IGF-IA and IB mRNAs in the mouse.2005

    • Author(s)
      Ohtsuki T.et al.
    • Journal Title

      Zoological Science 22・9

      Pages: 1011-1021

    • Related Report
      2005 Annual Research Report
  • [Presentation] Ars インスレーター機能の分子メカニズムの解析2007

    • Author(s)
      坂本尚昭
    • Organizer
      第30回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2007-12-15
    • Related Report
      2007 Annual Research Report
  • [Presentation] バフンウニT-brain遺伝子の空間的発現調節領域の解析2007

    • Author(s)
      落合 博
    • Organizer
      第30回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2007-12-12
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] The ISWI chromatin remodeling complex RSF functions with histone variant H2Av for silent chromatin formation2007

    • Author(s)
      花井一馬
    • Organizer
      第30回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2007-12-12
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary
  • [Presentation] Arsインスレーター機能の分子メカニズムの解析2007

    • Author(s)
      坂本尚昭
    • Organizer
      第30回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2007-12-12
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] マウスアリールスルファターゼAの細胞外基質としての機能に関する研究.2007

    • Author(s)
      藤田和将
    • Organizer
      第30回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2007-12-12
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] クロマチン再構成系を用いたArsインスレーターの解析2007

    • Author(s)
      稲井優太
    • Organizer
      第30回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2007-12-12
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Analysis of cis-regulatory regions responsible for temporal specific expression of sea urchin HpTb gene2007

    • Author(s)
      Ochiai, H
    • Organizer
      30st annual meeting for molecular biology society of Japan
    • Place of Presentation
      Yokohama
    • Year and Date
      2007-12-12
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] The ISWI chromatin remodeling complex RSF functions with histone variant H2Av for silent chromatin formation2007

    • Author(s)
      Hanai, K
    • Organizer
      30st annual meeting for molecular biology society of Japan
    • Place of Presentation
      Yokohama
    • Year and Date
      2007-12-12
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Study on the functional mechanism of Ars insulator2007

    • Author(s)
      Sakamoto, N
    • Organizer
      30st annual meeting for molecular biology society of Japan
    • Place of Presentation
      Yokohama
    • Year and Date
      2007-12-12
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Study on the function of mouse Am A as an extracellular matrix2007

    • Author(s)
      Fujita, K
    • Organizer
      30st annual meeting for molecular biology society of Japan
    • Place of Presentation
      Yokohama
    • Year and Date
      2007-12-12
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Analysis on the Ars insulator using reconstruction system of chromatin2007

    • Author(s)
      Inai, Y
    • Organizer
      30st annual meeting for molecular biology society of Japan
    • Place of Presentation
      Yokohama
    • Year and Date
      2007-12-12
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] ブフンウニT-brain遺伝子の空間的発現調節領域の解析2007

    • Author(s)
      落合 博
    • Organizer
      第30回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2007-12-12
    • Related Report
      2007 Annual Research Report
  • [Presentation] クロマチン再構成系を用いたArs インスレーターの解析2007

    • Author(s)
      稲井優太
    • Organizer
      第30回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2007-12-12
    • Related Report
      2007 Annual Research Report
  • [Presentation] Biological functions of the ISWI chromatin remodeling complex RSF.2007

    • Author(s)
      Hanai K, et. al.
    • Organizer
      Mechanism of eukaryotic transcription
    • Place of Presentation
      NY, USA
    • Year and Date
      2007-09-02
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary
  • [Presentation] Biological functions of the ISWI chromatin remodeling complex RSF2007

    • Author(s)
      Hanai, K
    • Organizer
      Mechanism of eukaryotic transcription
    • Place of Presentation
      NY, USA
    • Year and Date
      2007-09-02
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 細胞種に依存した細胞の放射線応答反応: アポトーシス誘発と分裂期異常2006

    • Author(s)
      秋元志美
    • Organizer
      第49回日本放射線影響学会
    • Place of Presentation
      札幌
    • Year and Date
      2006-09-06
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Cell line specific reaction to radiation2006

    • Author(s)
      Akimoto, S
    • Organizer
      49th annual meeting for Japan radiation research society
    • Place of Presentation
      Sapporo
    • Year and Date
      2006-09-06
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Transcriptional regulation of T-brain gene(Tb)during sea urchin(Hemicentrotus pulcherrimus)development2006

    • Author(s)
      Yamamoto, T.
    • Organizer
      20th IUBMB international congress of Biochemistry and Molecular biology
    • Place of Presentation
      Kyoto
    • Year and Date
      2006-06-21
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Cloning and analysis of sea urchin(Hemicentrotus pulcherrimus)CTCF homolog2006

    • Author(s)
      Fujita, M.
    • Organizer
      20th IUBMB international congress of Biochemistry and Molecular biology
    • Place of Presentation
      Kyoto
    • Year and Date
      2006-06-21
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Biological functions of the ISWI chromatin remodeling complex RSF.2006

    • Author(s)
      Hanai, K.
    • Organizer
      20th IUBMB international congress of Biochemistry and Molecular biology
    • Place of Presentation
      Kyoto
    • Year and Date
      2006-06-21
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Transcriptional regulation of T-brain gene (Tb) during sea urchin (Hemicentrotus pulcherrimus) development2006

    • Author(s)
      Yamamoto, T
    • Organizer
      20th IUBMB international congress of biochemistry and molecular biology
    • Place of Presentation
      Kyoto
    • Year and Date
      2006-06-21
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Cloning and analysis of sea urchin (Hemicentrotus pulcherrimus) CTCF homolog2006

    • Author(s)
      Fijita, M
    • Organizer
      20th IUBMB international congress of biochemistry and molecular biology
    • Place of Presentation
      Kyoto
    • Year and Date
      2006-06-21
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Biological functions of the ISWI chromatin remodeling complex RSF2006

    • Author(s)
      Hanai, K
    • Organizer
      20th IUBMB international congress of biochemistry and molecular biology
    • Place of Presentation
      Kyoto
    • Year and Date
      2006-06-21
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Isolation of genes encoding secreted and membrane-bound proteins in the sea urchin embryo by signal sequence trap screens2006

    • Author(s)
      Hiramatsu, N.
    • Organizer
      第39回日本発生生物学会大会
    • Place of Presentation
      広島
    • Year and Date
      2006-06-02
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Isolation of genes encoding secreted and membrane-bound proteins in the sea urchin embryo by signal sequence trap screens2006

    • Author(s)
      Hiramatsu, N
    • Organizer
      39st annual meeting for the Japanese society of developmental biologists
    • Place of Presentation
      Hiroshima
    • Year and Date
      2006-06-02
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] クロマチンリモデリング複合体RSFの生物学的機能解析2005

    • Author(s)
      花井一馬
    • Organizer
      第28回日本分子生物学会年会
    • Place of Presentation
      福岡
    • Year and Date
      2005-12-07
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Biological functions of the ISWI chromatin remodeling complex RSF2005

    • Author(s)
      Hanai, K
    • Organizer
      28st annual meeting for molecular biology society of Japan
    • Place of Presentation
      Fukuoka
    • Year and Date
      2005-12-07
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] バフンウニ胚T-brain遺伝子の転写調節領域の解析2005

    • Author(s)
      樅山明日香
    • Organizer
      第76回日本動物学会
    • Place of Presentation
      つくば
    • Year and Date
      2005-10-06
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] バフンウニの長期細胞系譜追跡2005

    • Author(s)
      矢島麻美子
    • Organizer
      第76回日本動物学会
    • Place of Presentation
      つくば
    • Year and Date
      2005-10-06
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Transcriptional regulation of the HpTb gene during sea urchin (Hemicentrotus pulcherrimus) development2005

    • Author(s)
      Momiyama, A
    • Organizer
      76st annual meeting for the Zoological society of Japan
    • Place of Presentation
      Tsukuba
    • Year and Date
      2005-10-06
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Skeletogenic cells forming adult sea urchin spicules2005

    • Author(s)
      Yajima, M
    • Organizer
      76st annual meeting for the Zoological society of Japan
    • Place of Presentation
      Tsukuba
    • Year and Date
      2005-10-06
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] バフンウニNanosホモログ(HpNanos)の初期発生における発現解析2005

    • Author(s)
      藤井孝吉
    • Organizer
      第38回日本発生生物学会大会
    • Place of Presentation
      仙台
    • Year and Date
      2005-06-02
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Analysis of gene expression of HpNanos during development2005

    • Author(s)
      Fujii, T
    • Organizer
      38st annual meeting for the Japanese society of developmental biologists
    • Place of Presentation
      Sendai
    • Year and Date
      2005-06-02
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] ヒストンの翻訳後修飾のイオントラップ-TOF型質量分析法による解析2005

    • Author(s)
      北島幸太郎
    • Organizer
      第85回日本化学会
    • Place of Presentation
      横浜
    • Year and Date
      2005-03-26
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Analysis of Histone modification after translation by ion trap methods2005

    • Author(s)
      Kitajima. K
    • Organizer
      85st annual meeting for the Chemical society of Japan
    • Place of Presentation
      Yokohama
    • Year and Date
      2005-03-26
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] Gene Expression and Chromatin2006

    • Author(s)
      Sakamoto, N.
    • Publisher
      Involvement of nuclear matrix and chromatin loop formation in the functions of insulators
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] DNA Structure, Chromatin and Gene Expression2006

    • Author(s)
      Sakamoto N. et al.
    • Total Pages
      252
    • Publisher
      Transworld Research Network, India
    • Related Report
      2006 Annual Research Report
  • [Remarks]

    • URL

      http://www.mls.sci.hiroshima-u.ac.jp/smg/

    • Related Report
      2007 Annual Research Report

URL: 

Published: 2005-04-01   Modified: 2016-04-21  

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