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Functions, diversity, and physiological functions of novel heme-containing enzyme "aldoxime dehydratase"

Research Project

Project/Area Number 17580069
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied microbiology
Research InstitutionFaculty of Engineering, Toyama Prefectural University

Principal Investigator

KATO Yasuo  Toyama Prefectural University, Faculty of Engineering, Associate Professor, 工学部, 助教授 (20254237)

Co-Investigator(Kenkyū-buntansha) ASANO Yasuhisa  Toyama Prefectural University, Faculty of Engineering, Professor, 工学部, 教授 (00222589)
KOMEDA Hidenobu  Toyama Prefectural University, Faculty of Engineering, Assistant Professor, 工学部, 講師 (50285160)
AONO Shigetoshi  Okazaki Institute for Integrative Bioscience, National Institutes of Natural Sciences, Professor, 岡崎統合バイオサイエンスセンター, 教授 (60183729)
Project Period (FY) 2005 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥3,700,000 (Direct Cost: ¥3,700,000)
Fiscal Year 2006: ¥900,000 (Direct Cost: ¥900,000)
Fiscal Year 2005: ¥2,800,000 (Direct Cost: ¥2,800,000)
Keywordsaldoxime / nitrile / aldoxime-nitrile pathway / enzyme / gene / screening / microorganisms / reaction mechanisms
Research Abstract

We examined the following experiments in order to clarify 1) reaction mechanism of aldoxime dehydratase (Oxd), 2) diversity of aldoxime dehydratase, and 3) diversity and physiological function of "aldoxime-nitrile pathway".
1. We constructed an overexpression system of nitrilase (Nit)-linked oxd gene from Bacillus sp. OxB-1 in a recombinant E. coli and obtained large quantities of Oxd protein (OxdB) in highly pure and homogenous form.
2. We analyzed OxdB protein spectrophotometrically to identify its heme environment and functional residue during enzyme catalysis.
3. We screened oxd genes genetically from stock cultures and cloned whole lengths oxd genes.
4. We overexpressed new oxds in E.coli and examined their characters. Based on the findings, physiological functions of Oxds are studied.
5. We genetically screened nitrile-degrading enzymes in strains having "aldoxime-nitrile pathway" and cloned their genes.
6. We compared the characters and primary structures of the nitrile-degrading enzymes and studied the relationship between Oxds enzymologically and genetically. Physiology and evolutions of the pathway are also discussed.

Report

(3 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • Research Products

    (18 results)

All 2007 2006 2005 Other

All Journal Article (18 results)

  • [Journal Article] VioE, a prodeoxyviolacein synthase involved in violacein biosynthesis, is responsible for intramolecular indole rearrangement2007

    • Author(s)
      S.Asamizu, Y.Kato, Y.Igarashi, H.Onaka
    • Journal Title

      Tetrahedron Letters 48

      Pages: 2923-2926

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] Purification and partial characterization of N-hydroxy-L-phenylalanine decarboxylase/oxidase from Bacillus sp. strain OxB-1, an enzyme involved in aldoxime biosynthesis in the "aldoxime nitrile pathway"2007

    • Author(s)
      Y.Kato, T.Tsuda, Y.Asano
    • Journal Title

      Biochimica et Biophysica Acta 48(in press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] VioE a prodeoxyviolacein synthase involved in violacein biosynthesis, is responsible for intramolecular indole rearrangement2007

    • Author(s)
      S.Asamizu, Y.Kato, Y.Igarashi, H.Onaka
    • Journal Title

      Tetrahedron Letters 48

      Pages: 2923-2926

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Molecular and enzymatic analysis of the "aldoxime-nitrile pathway" in the glutaronitrile degrader Pseudomonas sp. K-92006

    • Author(s)
      Y.Kato, Y.Asano
    • Journal Title

      Applied Microbiology and Biotechnology 70

      Pages: 92-101

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] Spectroscopic substrate binding properties of heme-containing aldoxime dehydratases, OxdB and OxdRE2006

    • Author(s)
      K.Kobayashi, B.Pal, S.Yoshioka, Y.Kato, Y.Asano, T.Kitagawa, S.Aono
    • Journal Title

      Journal of Inorganic Biochemistry 100

      Pages: 1069-1074

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] Systematic regulation of the enzymatic activity of phenylacetaldoxime dehydratase by exogenous ligands2006

    • Author(s)
      K.Kobayashi, M.Kubo, S.Yoshioka, T.Kitagawa, Y.Kato, Y.Asano, S.Aono
    • Journal Title

      ChemBioChem 7

      Pages: 2004-2009

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Direct formation of chromopyrrolic acid from indole-3-pyruvic acid by StaD, a novel hemoprotein in indolocarbazole biosynthesis2006

    • Author(s)
      S.Asamizu, Y.Kato, Y.Igarashi, T.Furumai, H.Onaka
    • Journal Title

      Tetrahedron Letters 47

      Pages: 473-475

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] PmHNL catalyzed synthesis of (R)-cyanohydrins derived from aliphatic aldehydes2006

    • Author(s)
      S.Nanda, Y.Kato, Y.Asano
    • Journal Title

      Tetrahedron : Asymmetry 17

      Pages: 735-741

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Systematic regulation of the enzymatic activity of phenylacetaldoxime dehydratase by exogenous ligands2006

    • Author(s)
      K.Kobayashi, M.Kubo, S.Yoshioka, T.Kitagawa, Y.Kato, Y.Asano, S.Aono
    • Journal Title

      Chem Bio Chem 7

      Pages: 2004-2009

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Direct formation of chromopyrrolic acid from indole-3-pyruvic acid by StaD, a novel hemoprotein in indolocarbazole biosynthesis2006

    • Author(s)
      S.Asamizu, Y.Kato, Y.Igarashi, T.Furumai, H.Onaka
    • Journal Title

      Tetrahecron Letters 47

      Pages: 473-475

    • Related Report
      2006 Annual Research Report
  • [Journal Article] PmHNL catalyzed synthesis of (R)-cyanohydrins derived from aliphatic aldehydes2006

    • Author(s)
      S.Nanada, Y.Kato, Y.Asano
    • Journal Title

      Tetrahedron : Asymmetry 17

      Pages: 735-741

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Systematic regulation of the enzymatic activity of phenylacetaldoxime dehydratase by exogenous ligands2006

    • Author(s)
      K.Kobayashi, M.Kubo, S.Yoshioka, T.Kitagawa, Y.Kato, Y.Asano, S.Aono
    • Journal Title

      ChemBioChem. 7

      Pages: 200-2009

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Purification and characterization of aldoxime dehydratase of the head blight fungus, Fusarium graminearum2005

    • Author(s)
      Y.Kato, Y.Asano
    • Journal Title

      Bioscience Biotechnology and Biochemistry 69

      Pages: 2254-2257

    • NAID

      130000030507

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary 2005 Annual Research Report
  • [Journal Article] Polymerase chain reaction for identification of aldoxime dehydratase in aldoxime- or nitrile-degrading microorganisms2005

    • Author(s)
      Y.Kato, S.Yoshida, Y.Asano
    • Journal Title

      FEMS Microbilogy Letters 246

      Pages: 243-246

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary 2005 Annual Research Report
  • [Journal Article] Regulation of aldoxime dehydratase activity by redox-dependent change in the coordination structure of the aldoxime-heme complex2005

    • Author(s)
      K.Kobayashi, S.Yoshioka, Y.Kato, Y.Asano, S.Aono
    • Journal Title

      Journal of Biological Chemistry 280

      Pages: 5486-5490

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary 2005 Annual Research Report
  • [Journal Article] A new (R)-hydroxynitrile lyase from Prunus mume : asymmetric synthesis of cyanohydrins2005

    • Author(s)
      S.Nanda, Y.Kato, Y.Asano
    • Journal Title

      Tetrahedron 61

      Pages: 10908-10916

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary 2005 Annual Research Report
  • [Journal Article] Polymerase chain reaction for identification of aldoxime dehydratase in aldoxime-or nitrile-degrading microorganisms2005

    • Author(s)
      Y.Kato, S.Yoshida, Y.Asano
    • Journal Title

      FEMS Microbiology Letters 246

      Pages: 243-249

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Purification and partial characterization of N-hydroxy-L-phenylalanine decarboxylase/oxidase from Bacillus sp.strain OxB-1, an enzyme involved in aldoxime biosynthesis in the "aldoxime nitrile pathway",

    • Author(s)
      Y.Kato, T.Tsuda, Y Asano
    • Journal Title

      Biochimica et Biophysica Acta (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary

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Published: 2005-04-01   Modified: 2016-04-21  

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