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Exo-β-glucosaminidase from Amycolatopsis orientalis, : Reaction mechanism and Application to industrial sugar production

Research Project

Project/Area Number 17580085
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied biochemistry
Research InstitutionKinki University

Principal Investigator

FUKAMIZO Tamo  Kinki University, Department of Advanced Bioscience, Professor (50181243)

Project Period (FY) 2005 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥300,000)
Fiscal Year 2007: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2006: ¥1,000,000 (Direct Cost: ¥1,000,000)
Fiscal Year 2005: ¥1,600,000 (Direct Cost: ¥1,600,000)
Keywordschitosan / glucosaminidase / Reaction Specificity / catalytic residue / real-time monitoring / 質量分析 / グルコサミダーゼ / 部位特異的変異 / 反応機構 / 分泌発現
Research Abstract

Exo-β-glucosaminidase gene from Amycolatopsis orientalis was cloned, sequenced, and expressed in Streptomyces lividans TK24. The purified enzyme from the culture supernatant was tested for its reaction specificity. The enzyme was found to hydrolyze the β-1,4-glycosidic linkage of G1cN-G1cNAc in addition to G1cN-G1cN. Site-directed mutagenesis of Asp469 and Glu541 revealed that Asp469 is a proton donor and Glu541 a nuclephile. To more efficiently analyze the emzymatic reaction, we used continuous flow ESI-MS. The time-courses of the enzymatic hydrolysis of oligosaccharide substrates obtained by ESI-MS were found to be consistent with those obtained by HPLC. Furthermore, the amounts of the enzyme and substrate required for such a time-course determination were much lower than those required for determination by HPLC. The continuous flow ESI-MS was found to be efficient for characterizing the enzymatic reaction.

Report

(4 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • 2005 Annual Research Report
  • Research Products

    (31 results)

All 2008 2007 2006 2005 Other

All Journal Article (20 results) (of which Peer Reviewed: 7 results) Presentation (8 results) Book (1 results) Remarks (2 results)

  • [Journal Article] Oligosaccharide hydrolysis by chitosanase enzymes monitored by real-time electrospray ionization-mass spectrometry2008

    • Author(s)
      深溝 慶
    • Journal Title

      J.Biotechnol. 134

      Pages: 253-260

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Oligosaccharide hydrolysis by chitosanase enzymes monitored by real-time electrospray ionization-mass spectrometry.2008

    • Author(s)
      Dennhart, N., Fukamizo, T., Letzel, T.
    • Journal Title

      J. Biotechnol. 134

      Pages: 253-260

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Oligosaccharide hydrolysis by chitosanase enzymes monitored by real-time electrospray ionization-mass spectrometry2008

    • Author(s)
      深溝 慶
    • Journal Title

      J.Biotechnol (印刷中)

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The role of Arg114 at subsites E and F in reactions catalyzed by hen egg-white lysozyme2008

    • Author(s)
      深溝 慶
    • Journal Title

      Biosci.Biotechnol.Biochem 72

      Pages: 823-832

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Role of the Loop Structure of the Catalytic Domain in Rice Class I Chitinase2008

    • Author(s)
      深溝 慶
    • Journal Title

      J.Biochem 143

      Pages: 487-495

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] β-1,4-glucanase-like protein from the cyanobacterium Synechocystis PCC6803 is a β-1,3-1,4-glucanase and functions in salt stress tolerance2008

    • Author(s)
      深溝 慶
    • Journal Title

      Biochem.J. 405

      Pages: 139-146

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure and Function of Exo-β-Glucosaminidase from Amycolatopsis orientalis2007

    • Author(s)
      深溝 慶
    • Journal Title

      J.Appl.Glycosci. 54

      Pages: 133-138

    • NAID

      10018617656

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Structure and Function of Exo-β-Glucosaminidase from Amycolatopsis orientalis2007

    • Author(s)
      Fukamizo, T., Brzezinski, R.
    • Journal Title

      J. Appl. Glycosci. 54

      Pages: 133-138

    • NAID

      10018617656

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] ?-1,4-glucanase-like protein from the cyanobacterium Synechocystis PCC6803 is a ?-1,3;1,4-glucanase and functions in salt stress tolerance.2007

    • Author(s)
      Tamoi, M., Fukamizo, T.
    • Journal Title

      Biochem. J. (印刷中)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Exo-β-D-glucosaminidase from Amycolatopsis orientalis:catalytic residues,sugar recognition specificity,kinetics,and synergism2006

    • Author(s)
      深溝 慶
    • Journal Title

      Glycobiology 16

      Pages: 1064-1072

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Two exo-β-D-glucosaminidases/exochitosanases from actinomy-cetes define a new subfamily within family 2 of glycoside hydrolases2006

    • Author(s)
      深溝 慶
    • Journal Title

      Biochem.J. 394(3)

      Pages: 675-686

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Exo-β-D-glucosaminidase from Amycolatopsis orientalis : catalytic residues, sugar recognition specificity, kinetics, and synergism.2006

    • Author(s)
      Fukamizo, T., Brzezinski, R.
    • Journal Title

      Glycobiology 16

      Pages: 1064-1072

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Two exo-β-D-glucosaminidases/exochitosanases from actinomycetes define a new subfamily within family 2 of glycoside hydrolases.2006

    • Author(s)
      Cote, N., Fukamizo, T., Brzezinski, R.
    • Journal Title

      Biochem. J. 394

      Pages: 675-686

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Rice chitinases : sugar recognition specificities of the individual subsites.2006

    • Author(s)
      Sasaki, C., Fukamizo, T.
    • Journal Title

      Glycobiology 16

      Pages: 1242-1250

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Exo-?-D-glucosaminidase from Amycolatopsis orientalis : catalytic residues, sugar recognition specificity, kinetics, and synergism.2006

    • Author(s)
      Fukamizo, T. et al.
    • Journal Title

      Glycobiology 16

      Pages: 1064-1072

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Chitosan-Soyprotein interaction as determined by thermal unfolding experiments2006

    • Author(s)
      Takeuchi, Fukamizo
    • Journal Title

      Biosci.Biotechnol.Biochem. (印刷中)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Two exo-β-D-glucosaminidases/exochitosanases from actionomycetes define a new subfamily within family 2 of glycoside hydrolases.2006

    • Author(s)
      Cote, Fukamizo
    • Journal Title

      Biochem.J. 394(3)

      Pages: 675-686

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Role of acidic amino acid residues in chitooligosaccharide-binding to Streptomyces sp. N174 chitosanase2005

    • Author(s)
      Katsumi, Fukamizo
    • Journal Title

      Biochem.Biophys.Res.Commun. 338

      Pages: 1839-1844

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Bacillus circulans MH-K1 Chitosanase : Amino Acid Residues Responsible for Substrate Binding2005

    • Author(s)
      Fukamizo
    • Journal Title

      J.Biochem. 138

      Pages: 563-569

    • Related Report
      2005 Annual Research Report
  • [Journal Article] 26 kDa Endochitinase from Barley Seeds : An Interaction of the Ionizable Side Chains Essential for catalysis2005

    • Author(s)
      Ohnishi, Fukamizo
    • Journal Title

      J.Biochem 138

      Pages: 553-562

    • Related Report
      2005 Annual Research Report
  • [Presentation] ソテツ由来FamilyGH-18キチナーゼの芳香族アミノ酸残基について2007

    • Author(s)
      深溝 慶
    • Organizer
      日本農芸化学会関西中部支部合同大会
    • Place of Presentation
      中部大学 春日井キャンパス
    • Year and Date
      2007-09-22
    • Related Report
      2007 Annual Research Report
  • [Presentation] ラン藻由来β-1,3-1,4-グルカナーゼの加水分解特異性2007

    • Author(s)
      深溝 慶
    • Organizer
      日本農芸化学会関西中部支部合同大会
    • Place of Presentation
      中部大学 春日井キャンパス
    • Year and Date
      2007-09-22
    • Related Report
      2007 Annual Research Report
  • [Presentation] ラン藻由来β-1,3-1,4-グルカナーゼの加水分解特異性2007

    • Author(s)
      深溝 慶
    • Organizer
      日本応用糖質科学会平成19年度大会
    • Place of Presentation
      日本大学生物資源科学部
    • Year and Date
      2007-08-29
    • Related Report
      2007 Annual Research Report
  • [Presentation] Streptomyces sp.N174キトサナーゼの触媒部位近傍のアミノ酸残基の役割2007

    • Author(s)
      深溝 慶
    • Organizer
      第21回キ-チンキトサンシンポジウム
    • Place of Presentation
      神戸国際会議場
    • Year and Date
      2007-07-27
    • Related Report
      2007 Annual Research Report
  • [Presentation] Amycolatopsis orientalis由来エキソ-b-グルコサミニダーゼの構造と機能2006

    • Author(s)
      深溝 慶
    • Organizer
      第14回糖質関連酵素化学シンポジウム
    • Place of Presentation
      大阪府立大学学術交流会館
    • Year and Date
      2006-09-29
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Structure and Function of Exo-β-Glucosaminidase from Amycolatopsis orientalis2006

    • Author(s)
      Fukamizo, T. Brzezinski, R.
    • Organizer
      14th Sumposium on Amylase and Related Enzymes
    • Place of Presentation
      Osaka Prefectural University
    • Year and Date
      2006-09-29
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Exo-β-D-glucosaminidase from Amycolatopsis orientalis:catalytic residues,sugar recognition specificity,kinetics,and synergism2006

    • Author(s)
      深溝 慶
    • Organizer
      10th International Conference on Chitin&Chitosan
    • Place of Presentation
      モンペリエ,フランス
    • Year and Date
      2006-09-07
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Exo-β-D-glucosaminidase from Amyeolatopsis orientalis : catalytic residues, sugar recognition specificity, kinetics, and synergism.2006

    • Author(s)
      Fukamizo, T. Brzezinski, R.
    • Organizer
      10th International Conference on Chitin and Chitosan
    • Place of Presentation
      Monpellier, France
    • Year and Date
      2006-09-07
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] Material Science of Chitin and Chitosan2006

    • Author(s)
      深溝 慶
    • Total Pages
      284
    • Publisher
      KODANSHA Springer
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Remarks] 「研究成果報告書概要(和文)」より

    • URL

      http://nara-kindai.unv.jp/02gakka/06bio/BioMolecularChem/Fukamizo/Research/index.html

    • Related Report
      2007 Final Research Report Summary
  • [Remarks]

    • URL

      http://nara-kindai.unv.jp/02gakka/06bio/BioMolecularChem/Fukamizo/Research/index.html

    • Related Report
      2007 Annual Research Report

URL: 

Published: 2005-04-01   Modified: 2016-04-21  

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