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Topological Study of the Conformational Interconversion Pathway and Molecular Folding

Research Project

Project/Area Number 17590032
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Physical pharmacy
Research InstitutionInternational University of Health and Welfare (2006)
The University of Tokushima (2005)

Principal Investigator

GOTO Satoru  International University of Health and Welfare, Faculty of Pharmaceutical Sciences, Associate Professor, 薬学部, 准教授 (50253232)

Co-Investigator(Kenkyū-buntansha) KOMATSU Kazushi  Kochi University, Faculty of Science, Associate Professor, 理学部, 准教授 (00253336)
HORI Hitoshi  University of Tokushima, Faculty of Engineering, Professor, 工学部, 教授 (90119008)
TERADA Hiroshi  Tokyo University of Science, Faculty of Pharmaceutical Sciences, Professor, 薬学部, 教授 (00035544)
Project Period (FY) 2005 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥3,600,000 (Direct Cost: ¥3,600,000)
Fiscal Year 2006: ¥1,000,000 (Direct Cost: ¥1,000,000)
Fiscal Year 2005: ¥2,600,000 (Direct Cost: ¥2,600,000)
Keywordsmanifold / cepharanthine / tetrandrine / principle component analysis / AMBER / nuclear magnetic resonance / principle component analysis / Manifold / 配置空間 / 水晶発振子センサー / 糖分子認識 / Interconversion
Research Abstract

Structural features of cepharanthine on its antiperoxidation and radical scavenging activities were determined by the crystallographic and theoretical studies. Our obtained results indicated that the conformational flexibility of this macrocyclic alkaloid was informative to the activities.
We computed the conformational variations of macrolide antibiotics, erythromycin A (EMA), clarithromycin (CAM), and azithromycin (AZM), using our developed program of the comprehensive conformational search adaptive to the medicinal and phytochemical compounds. According to the obtained results, we predicted that the α-chains (at 1-8 positions) of the macrocyclic backborns obviously have higher flexibility than their ω-chains (at 9-13 positions). Actually, diversity of three-dimensional structure of these macrolides were observed at α-chain rather than at ω-chain, in the ligand-site complex with any biomacromolecules. In the present work, we investigated the solution structures of these macrolides, based on the NMR spectroscopy. We successfully quantified the flexibility of α- and ω-chains.

Report

(3 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • Research Products

    (7 results)

All 2007 2006 2005

All Journal Article (7 results)

  • [Journal Article] Pharmacoinformatical and mathematical study for the diversity of 3D structures and the conformational interconversion of macrocyclic compound2007

    • Author(s)
      Goto S, Munakata T, Komatsu K
    • Journal Title

      Journal of the Pharmaceutical Society of Japan 126(S5)

      Pages: 266-269

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] Conformational flexibility effect of one configuration difference2007

    • Author(s)
      Munakata T, Goto S, Komatsu K
    • Journal Title

      Journal of the Pharmaceutical Society of Japan 126(S5)

      Pages: 270-273

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] Pharmacoinformatical and mathematical study for the diversity of 3D structures and the conformational interconversion of macrocyclic compound2007

    • Author(s)
      Goto S, Munakata T, Komatsu K
    • Journal Title

      J.Pharm.Soc.Jpn. 126-S5

      Pages: 266-269

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Conformational flexibility effect of one configuration difference2007

    • Author(s)
      Munakata T, Goto S, Komatsu K
    • Journal Title

      J.Pharm.Sci.Jpn. 126-S5

      Pages: 270-273

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Synthesis and characterization of bromonium yilides and their unusual ligand transfer reaction with N-heterocycles2006

    • Author(s)
      Ochiai M, Tada N, Murai K, Goto S, Shiro M
    • Journal Title

      Journal of American Chemical Society 128(30)

      Pages: 9608-9609

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] Synthesis and characterization of bromonium yilides and their unusual ligand transfer reaction with N-heterocycles2006

    • Author(s)
      Ochiai M, Tada N, Murai K, Goto S, Shiro M
    • Journal Title

      J.Am.Chem.Soc. 128-30

      Pages: 9608-909

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] 1-Alkynyl(aryl)(tetrafluoroborato)-l^3-bromanes as highly efficient Michael acceptors : uncatalyzed conjugate addition of 1-alkynyl(trialkyl)stannanes to yield symmetrical and unsymmetrical 1,3-butadiynes.2005

    • Author(s)
      Ochiai, Nishi, Goto, Frohn
    • Journal Title

      Angew. Chem. Int. Ed. Engl. 44(3)

      Pages: 406-409

    • Related Report
      2005 Annual Research Report

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Published: 2005-04-01   Modified: 2016-04-21  

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