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Analysis of stem-cell differentiation mechanism by using DNA microarray and novel bisulfite modification.

Research Project

Project/Area Number 17590080
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Biological pharmacy
Research InstitutionShujitsu University

Principal Investigator

NAKANISHI Tohru  Shujitsu University, School of Pharmacy, Professor, 薬学部, 教授 (30243463)

Co-Investigator(Kenkyū-buntansha) HAYATSU Hikoya  Shujitsu University, School of Pharmacy, Professor, 薬学部, 教授 (10012593)
MORI Hiroki  Shujitsu University, School of Pharmacy, Assistant, 薬学部, 助手 (40388989)
OKA Tsuyoshi  Okayama Univ., Graduate School of Medicine, Dentistry and Pharmaceutical Science, Assistant, 大学院医歯薬学総合研究科, 助手 (50160651)
Project Period (FY) 2005 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥3,500,000 (Direct Cost: ¥3,500,000)
Fiscal Year 2006: ¥1,700,000 (Direct Cost: ¥1,700,000)
Fiscal Year 2005: ¥1,800,000 (Direct Cost: ¥1,800,000)
Keywordsstem cells / telomerase / DNA chips / DNA methylation / osteoblasts / adipocytes
Research Abstract

We performed DNA microarray analysis of immortalized human mesenchymal stem cell clones. Among them, clone no.12 showed highest ability of differentiation to osteoblasts, chondrocytes and adipocytes, and its profiling analysis showed characteristic patterns of gene expression. In order to know the relationship between stem cell differentiation and DNA methylation, we next performed global methylation analysis of stem cell clones under differentiation processes by using CpG methylation array system. As a result, we isolated 11 genes under osteoblastic differentiation process and four genes under adipocytic differentiation process as candidates of up-regulated or down-regulated genes of methylation status. Furthermore, we isolated 82 genes varying their methylation levels during stem cell differentiation by using novel bisulfite modification with which genome-wide identification of methylation sites may become possible. These genes were supposed to be important for regulation of stem cell differentiation and reconstruction of methylation status. These results may contribute to the progress of stem cell research and regeneration medicine up to date.

Report

(3 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • Research Products

    (21 results)

All 2007 2006 2005

All Journal Article (21 results)

  • [Journal Article] Characterization and gene expression profiling of human mesenchymal stem cells.2007

    • Author(s)
      Mori H et al.
    • Journal Title

      J Hard Tissue Biol 16(In press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Characterization and gene expression profiling of human mesenchymal stem cells.2007

    • Author(s)
      Mori H, Itano Y, Kobayashi N, Kosaka Y, Tanaka N, Nakanishi T.
    • Journal Title

      J Hard Tissue Biol 16 (in press)

    • NAID

      110006250205

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Characterization and gene expression profiling of human mesenchymal stem cells.2007

    • Author(s)
      Mori H et al.
    • Journal Title

      J Hard Tissue Biol 16 (in press)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] 間葉系幹細胞のエピジェネティックな制御機構と特異的分化に関与する遺伝子の網羅的解析2007

    • Author(s)
      高野正幸 他
    • Journal Title

      再生医療 6

      Pages: 42-42

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Expression of WISP-1(ccn4), WISP-2(ccn5) and WISP-3(ccn6) in rheumatoid arthritic synovium evaluated by DNA microarrays.2006

    • Author(s)
      Mori H et al.
    • Journal Title

      J Hard Tissue Biol 15

      Pages: 89-95

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] Bisulfite modification of cytosine and 5-methylcytosine as used in epigenetic studies.2006

    • Author(s)
      Hayatsu H
    • Journal Title

      Genes and Envir 28

      Pages: 1-8

    • NAID

      110004740316

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Expression of WISP-1(ccn4), WISP-2(ccn5) and WISP-3(ccn6) in rheumatoid arthritic synovium evaluated by DNA microarrays.2006

    • Author(s)
      Mori H.Nishida K, Ozaki T, Inoue H, Setsu K, Tsujigiwa H, Nagatsuka H, Gunduz M, Nakanishi T.
    • Journal Title

      J Hard Tissue Biol 15

      Pages: 89-95

    • NAID

      110006151628

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Bisulfite modification of cytosine and 5-methylcytosine as used in epigenetic studies.2006

    • Author(s)
      Hayatsu H.
    • Journal Title

      Genes and Envir 28

      Pages: 1-8

    • NAID

      110004740316

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Quality control of photosystem II-Cleavage of reaction center D1 protein in spinach thylakoids by FtsH protease under moderate heat stress.2006

    • Author(s)
      Yoshioka M et al.
    • Journal Title

      J Biol Chem 281

      Pages: 21660-21669

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Identification of the genes specifically changing DNA methylation status during osteoblastic/adipocytic differentiations in human mesenchymal stem cells2006

    • Author(s)
      Takano M et al.
    • Journal Title

      International Congress of Biochemistry and Molecular Biology Abst.

      Pages: 558-558

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Bisulfite modification of cytosine and 5-methylcytosine as used in epigenetic studies.2006

    • Author(s)
      Hayatsu H(単著)
    • Journal Title

      Genes and Envir 28

      Pages: 1-8

    • NAID

      110004740316

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Induction of claudin-4 by nonsteroidal anti-inflammatory drugs and its contribution to their chemopreventive effect.2005

    • Author(s)
      Mima S et al.
    • Journal Title

      Cancer Res 65

      Pages: 1868-1876

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Gene expression of connective tissue growth factor (CTGF/CCN2) in calcifying tissues of normal and cbfa1-null mutant in late stage of mouse embryonic development.2005

    • Author(s)
      Yamaai T et al.
    • Journal Title

      J Bone Miner Metab 23

      Pages: 280-288

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Gene expression profiling and differentiation of immortalized human mesenchymal stem cells.2005

    • Author(s)
      Mori H et al.
    • Journal Title

      J Hard Tissue Biol 14

      Pages: 267-268

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Induction of claudin-4 by nonsteroidal anti-inflammatory drugs and its contribution to their chemopreventive effect.2005

    • Author(s)
      Mima S, Tsutsumi S, Ushijima H, Takeda M, Fukuda I, Yokomizo K, Suzuki K, Sano K, Nakanishi T, Tomisato W, Tsuchiya T, Mizushima T.
    • Journal Title

      Cancer Res 65

      Pages: 1868-1876

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Gene expression of connective tissue growth factor (CTGF/CCN2) in calcifying tissues of normal and cbfal-null mutant in late stage of mouse embryonic development.2005

    • Author(s)
      Yamaai T, Nakanishi T, Asano M, Nawachi K, Yoshimichi G, Ohyama K, Komori T, Sugimoto T, Takigawa M.
    • Journal Title

      J Bone Miner Metab 23

      Pages: 280-288

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Gene expression profiling and differentiation of immortalized human mesenchymal stem cells.2005

    • Author(s)
      Mori H, Kato J, Matsuo H, Kobayashi N, Kosaka Y, Oka T, Tanaka N, Nakanishi T.
    • Journal Title

      J Hard Tissue Biol 14

      Pages: 267-268

    • NAID

      110005853555

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Induction of claudin-4 by nonsteroidal anti-inflammatory drugs and its contribution to their chemopreventive effect.2005

    • Author(s)
      Mima S, Nakanishi T(8番目)
    • Journal Title

      Cancer Res 65

      Pages: 1868-1876

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Gene expression of connective tissue growth factor (CTGF/CCN2) in calcifying tissues of normal and cbfal-null mutant in late stage of mouse embryonic development.2005

    • Author(s)
      Yamaai T, Nakanishi T(2番目)
    • Journal Title

      J Bone Miner Metab 23

      Pages: 280-288

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Effect of connective tissue growth factor (CCN2/CTGF) on proliferation and differentiation of mouse periodontal ligament-derived cells.2005

    • Author(s)
      Asano M, Nakanishi T(3番目)
    • Journal Title

      Cell Commun Signal 3

      Pages: 1-11

    • NAID

      120002311460

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Differentiation and gene expression profiling of human esenchymal stem cells.2005

    • Author(s)
      Mori H(最初), Nakanishi T(最後)
    • Journal Title

      J Hard Tissue Biol 14

      Pages: 267-268

    • Related Report
      2005 Annual Research Report

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Published: 2005-04-01   Modified: 2016-04-21  

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