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X-ray Crystallographic Study of Antibiotics resistant Proteins

Research Project

Project/Area Number 17590090
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Drug development chemistry
Research InstitutionJosai International University

Principal Investigator

NUKAGA Michiyoshi  Josai International University, Faculty of Pharmaceutical Sciences, Associate Professor, 薬学部, 教授 (20251150)

Co-Investigator(Kenkyū-buntansha) KAKEGAWA Tomohito  Josai International University, Faculty of Pharmaceutical Sciences, Professor, 薬学部, 教授 (80169391)
OHUCHI Nozomi  Josai International University, Faculty of Pharmaceutical Sciences, Research Associate, 薬学部, 助手 (20398556)
Project Period (FY) 2005 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥3,600,000 (Direct Cost: ¥3,600,000)
Fiscal Year 2006: ¥900,000 (Direct Cost: ¥900,000)
Fiscal Year 2005: ¥2,700,000 (Direct Cost: ¥2,700,000)
KeywordsInfection Disease / Antibiotics / Enzyme / Protein / X-ray Crystallography
Research Abstract

4 Projects are included in this study.
1) β-Lactamase:
1-a) SHV-1 : meropenem complex:
High resolution (1.05 A) x-ray structure of SHV-1 covalently complexed with meropenem was solved. High resolution data provides some electron densities for important hydrogen atoms. One of the interesting results is protonated Glu166 and associated hydrogen bonding network around deacylation water. They suggest the deacylation water with the nucleophilicity decreased.
1-b) GC1 β-Lactamase : ampicillin complex:
Complex of class C β-lactamase from Enterobacter cloacae GC1 with good substrate ampicillin was trapped using protein modification and solved by x-ray crystallography. This is the first report in which acyl-enzyme of substrate could be trapped in classC β-lactamase.
2) AAC/APH bifunctional enzyme:
AAC/APH bifunctional enzyme was from MRSA and it add acetyl or/and phosphate group to amino glycoside antibiotics to inactivate. AAC/APH bifunctional enzyme gene was cloned to pCold vector for high expression. 3-5 mg protein could be obtained from 1 L culture. Kanamycin affinity column and gel filtration were used for purification. Preliminary crystallization screening was done. Although some crystals could be obtained, further optimizations are required.
3) Macrolide phosphotransferase:
Macrolide phosphotransferase gene (mphA) was cloned using PCR to pCold vector for high expression. Currently, the amount of the enzyme is not enough to make crystals. On the other hand, regulatory protein, mphR, could be highly expressed as GST fusion protein.
4) Dihydropteroate synthase from Mycobacterium Jeprae:
Dihydropteroate synthase (DHPS) is main target of dapson which is the important anti-M. leprae drug. To solve the complex of DHPS-dapson, high expression systems in E.coli were tested. In all of case, DHPS was expressed as inclusion body at first, co-expression with chaperone protein was effective to reduce them.

Report

(3 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • Research Products

    (15 results)

All 2006 2005

All Journal Article (15 results)

  • [Journal Article] SHV-1β-ラクタマーゼ・メロペネム複合体のX線結晶解析2006

    • Author(s)
      額賀 路嘉
    • Journal Title

      第79回日本細菌学会総会 (学会発表)(金沢)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Inhibition of the Class A Beta-Lactamases by Carbapenems : Crystallogra phic Observation of Two Conformations of Meropenem in SHV-12006

    • Author(s)
      M.Nukaga, C.R.Bethel, J.M.Thomson, J.R.Knox, R.A.Bonomo
    • Journal Title

      46^<th> Interscience Conference on Antimicrobial Agents and Chemotherapy (学会発表)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] X-ray Crystallographic study of SHV-1 : meropenem complex.2006

    • Author(s)
      M.Nukaga
    • Journal Title

      79^<th> Annual Meeting of Japanese Society for Microbiology. Kanazawa, JAPAN

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Inhibition of the Class A Beta-Lactamases by Carbapenems : Crystallographic Observation of Two Conformations of Meropenem in SHV-12006

    • Author(s)
      M.Nukaga, C.R.Bethel, J.M.Thomson, J.R.Knox, R.A.Bonomo
    • Journal Title

      46^<th> Interscience Conference on Antimicrobial Agents and Chemotherapy. San Francisco, California, USA

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Inhibition of the Class A Beta-Lactamases by Carbapenems : Crystallographic Observation of Two Conformations of Meropenem in SHV-12006

    • Author(s)
      M.Nukaga, C.R.Bethel, J.M.Thomson, J.R.Knox, R.A.Bonomo
    • Journal Title

      46^<th> Interscience Conference of Antimicrobial Agents and Chemotherapy Abstract Book

    • Related Report
      2006 Annual Research Report
  • [Journal Article] SHV-1β-ラクタマーゼ・メロペネム複合体のX線結晶解析(学会抄録)2006

    • Author(s)
      額賀 路嘉
    • Journal Title

      日本細菌学雑誌 61・1

      Pages: 114-114

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Inhibition of class D beta-lactamases by diaroyl phosphates2005

    • Author(s)
      Majumdar S, Adediran SA, Nukaga M, Pratt RF
    • Journal Title

      Biochemistry 44

      Pages: 16121-16129

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Inhibition of class D beta-lactamases by diaroyl phosphates2005

    • Author(s)
      Adediran SA, Nukaga M, Baurin S, Frere JM, Pratt RF
    • Journal Title

      Antimicrob Agents Chemother. 44

      Pages: 4410-4412

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] The D-methyl group in beta-lactamase evolution : evidence from the Y221G and GC1 mutants of the class C beta-lactamase of Enterobacter cloacae P99.2005

    • Author(s)
      Adediran SA, Zhang Z, Nukaga M, Palzkill T, Pratt RF
    • Journal Title

      Biochemistry 44

      Pages: 7543-7552

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Inhibition of class D beta-lactamases by diaroyl phosphates2005

    • Author(s)
      Majumdar S, Adediran SA, Nukaga M, Pratt RF
    • Journal Title

      Biochemistry Vol.44

      Pages: 16121-16129

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Inhibition of class D beta-lactamases by acyl phosphates and phosphonates.2005

    • Author(s)
      Adediran SA, Nukaga M, Baurin S, Frere jM, Pratt RF.
    • Journal Title

      Antimicrob Agents Chemother. Vol.49

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] The D-methyl group in beta-lactamase evolution : evidence from the Y221G and GC1 mutants of the class C beta-lactamase of Enterobacter cloacae P99.2005

    • Author(s)
      Adediran SA, Zhang Z, Nukaga M, Palzkill T, Pratt RF.
    • Journal Title

      Biochemistry Vol.44

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Inhibition of class D beta-lactamases by diaroyl phosphates2005

    • Author(s)
      Majumdar S, Adediran SA, Nukaga M, Pratt RF
    • Journal Title

      Biochemistry 44・49

      Pages: 16121-16129

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Inhibition of class D beta-lactamases by acyl phosphates and phosphonates.2005

    • Author(s)
      Adediran SA, Nukaga M, Baurin S, Frere JM, Pratt RF.
    • Journal Title

      Antimicrob Agents Chemother. 49・10

      Pages: 4410-4412

    • Related Report
      2005 Annual Research Report
  • [Journal Article] The D-methyl group in beta-lactamase evolution : evidence from the Y221G and GC1 mutants of the class C beta-lactamase of Enterobacter cloacae P99.2005

    • Author(s)
      Adediran SA, Zhang Z, Nukaga M, Palzkill T, Pratt RF.
    • Journal Title

      Biochemistry 44・20

      Pages: 7543-7552

    • Related Report
      2005 Annual Research Report

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Published: 2005-04-01   Modified: 2016-04-21  

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